Vigun01g138500.2
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g138500.2 vs. DB:Swiss
Match: TRPA1_ARATH (Tryptophan synthase alpha chain OS=Arabidopsis thaliana OX=3702 GN=TRPA1 PE=1 SV=2) HSP 1 Score: 446.817 bits (1148), Expect = 2.586e-159 Identity = 212/262 (80.92%), Postives = 241/262 (91.98%), Query Frame = 1 Query: 22 GLSETFTRLRKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEAL 807 GLSETF RL+ +GKVA IPYITAGDPDLSTTA+ALKVLDSCGSDIIELGVPYSDPLADGP IQAAA RSL KGTNFN+IISMLKEV+P+LSCPIALFTYYNPIL+RG E +M++++ GVHGL+VPDVPLEETETLR EA+K+ IELVLLTTPTTPK+RM AIV+A+EGF+YLVSSVGVTG R SV+ VQSLLQ+IKEAT+KPVAVGFGISKPEHVKQVA WGADGVIVGSAMVK+LGE++SP++GLKELE F ++LK AL Sbjct: 12 GLSETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPYSDPLADGPAIQAAARRSLLKGTNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYMTVIKNAGVHGLLVPDVPLEETETLRNEARKHQIELVLLTTPTTPKERMNAIVEASEGFIYLVSSVGVTGTRESVNEKVQSLLQQIKEATSKPVAVGFGISKPEHVKQVAEWGADGVIVGSAMVKILGESESPEQGLKELEFFTKSLKSAL 273
BLAST of Vigun01g138500.2 vs. DB:Swiss
Match: TRPA2_ARATH (Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TSA1 PE=1 SV=1) HSP 1 Score: 420.624 bits (1080), Expect = 1.959e-148 Identity = 212/262 (80.92%), Postives = 238/262 (90.84%), Query Frame = 1 Query: 22 GLSETFTRLRKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEAL 807 GL++TFT+L+K+GKVAFIPYITAGDPDLSTTAEALKVLD+CGSDIIELGVPYSDPLADGPVIQAAATRSL +GTN ++I+ ML +VVP++SCPI+LFTYYNPILKRG KFMS +R GV GLVVPDVPLEETE LR EA N IELVLLTTPTTP +RMK IVDA+EGF+YLVSS+GVTGARSSVSG VQSLL++IKEAT KPVAVGFGISKPEHVKQ+AGWGADGVIVGSAMVK+LG+AKSP EGLKELE ++LK AL Sbjct: 50 GLADTFTQLKKQGKVAFIPYITAGDPDLSTTAEALKVLDACGSDIIELGVPYSDPLADGPVIQAAATRSLERGTNLDSILEMLDKVVPQISCPISLFTYYNPILKRGLGKFMSSIRAVGVQGLVVPDVPLEETEMLRKEALNNDIELVLLTTPTTPTERMKLIVDASEGFIYLVSSIGVTGARSSVSGKVQSLLKDIKEATDKPVAVGFGISKPEHVKQIAGWGADGVIVGSAMVKLLGDAKSPTEGLKELEKLTKSLKSAL 311
BLAST of Vigun01g138500.2 vs. DB:Swiss
Match: TRPA_MAIZE (Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays OX=4577 GN=BX1 PE=1 SV=2) HSP 1 Score: 346.28 bits (887), Expect = 1.308e-118 Identity = 163/262 (62.21%), Postives = 206/262 (78.63%), Query Frame = 1 Query: 25 LSETFTRLRKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEALP 810 +S+T L +GK AFIPYITAGDPDL+TTAEAL++LD CG+D+IELGVP SDP DGP+IQA+ R+LA GT +A++ ML+EV PELSCP+ L +YY PI+ R ++ ++E GVHGL+VPD+P +L EAK N +ELVLLTTP P+DRMK I A+EGFVYLVS GVTG R++V+ V+SL+QE+K+ T KPVAVGFGISKPEHVKQ+A WGADGVI+GSAMV+ LGEA SP++GL+ LE +AR +K ALP Sbjct: 90 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRS----LAEMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNALP 347
BLAST of Vigun01g138500.2 vs. DB:Swiss
Match: TRPA_CYAP8 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) OX=41431 GN=trpA PE=3 SV=1) HSP 1 Score: 312.383 bits (799), Expect = 2.740e-106 Identity = 152/261 (58.24%), Postives = 192/261 (73.56%), Query Frame = 1 Query: 25 LSETFTRLRKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEAL 807 +S+ F LR + A IP+ITAGDPDL TTA+AL++LD+ G+D+IELGVPYSDPLADGPVIQAAATR+L +G ++ ++KEV PE+ PI LFTYYNPI RG E F+ V+ GV GLVVPD+PLEE E+L A + GI + LL PT+P +R++AI ++GF+YLVS GVTG RS V+ V+ LL ++ AT KP+ VGFGISKPEH QV WGAD VIVGSAMVK L E +P+EGLK + AF + LK+AL Sbjct: 4 VSDCFQSLRDRRQCALIPFITAGDPDLETTAKALRLLDASGADLIELGVPYSDPLADGPVIQAAATRALGRGVKLEDVLGVVKEVSPEIKAPIILFTYYNPIFYRGVEAFLQQVKAAGVQGLVVPDLPLEEAESLLKPAHEVGIAVTLLVAPTSPIERIEAIARQSQGFIYLVSVTGVTGMRSQVTSRVKELLTSLRSATDKPIGVGFGISKPEHALQVKNWGADAVIVGSAMVKRLAEG-TPEEGLKAIGAFCQDLKQAL 263
BLAST of Vigun01g138500.2 vs. DB:Swiss
Match: TRPA_CYAP4 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=trpA PE=3 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 2.800e-106 Identity = 149/261 (57.09%), Postives = 187/261 (71.65%), Query Frame = 1 Query: 25 LSETFTRLRKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEAL 807 +S F+ LR + A IP+ITAGDP L TA+AL+VLD G+D+IELGVPYSDPLADGP IQAAATR+L KGT +A++ M+ V P L P+ LFTYYNPI RG E F+ V + GV GLVVPD+PLEE +T+ +A GIEL LL PTTP+ R+ AI + ++GF+YLVS+ GVTG RS V G V LL E+++ T KP+ VGFGIS+PEH +QV WGAD IVGSA VK L E +P++GL + F R+LK AL Sbjct: 4 VSTCFSALRDRAQCALIPFITAGDPSLEITAKALQVLDQQGADLIELGVPYSDPLADGPTIQAAATRALQKGTRLDAVLEMISHVAPNLRSPLILFTYYNPIFHRGVEPFLQQVAQAGVQGLVVPDLPLEEADTVLTQAAAVGIELTLLVAPTTPRSRIAAIAERSQGFIYLVSTTGVTGMRSKVEGRVHELLLELQQVTDKPIGVGFGISQPEHARQVMEWGADAAIVGSAFVKRLAEG-TPEQGLAAIADFCRSLKTAL 263
BLAST of Vigun01g138500.2 vs. DB:Swiss
Match: TRPA_ACAM1 (Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=trpA PE=3 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 9.292e-103 Identity = 141/261 (54.02%), Postives = 189/261 (72.41%), Query Frame = 1 Query: 25 LSETFTRLRKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEAL 807 +S+ F +LR G+ A IP++TAGDPDL+TTA AL+ LD+ G+D+IELGVPYSDPLADGPVIQAAATR+L +GT + ++ M+ E+ PE+ PI LFTYYNPI RG +F+ + + GV GLVVPD+PLEE+E L +A GIE+ LL PT+ K+R++ I ++GF+YLVS+ GVTG R+ V VQ L+ ++++ T KP+ VGFGIS+ EH +QV WGAD IVGSA V L E SP +GL + F R+LK +L Sbjct: 4 VSDCFAQLRDRGQCALIPFLTAGDPDLATTASALRQLDASGADLIELGVPYSDPLADGPVIQAAATRALQRGTRLDQVLEMVTELSPEIRAPIILFTYYNPIYHRGVAEFLQQIAKAGVRGLVVPDLPLEESENLLQQAADLGIEVTLLVAPTSSKERIEKIALRSQGFIYLVSTTGVTGMRTKVENRVQDLIADLRQVTDKPIGVGFGISRTEHARQVMDWGADAAIVGSAFVNRLSEG-SPSQGLSAISTFCRSLKSSL 263
BLAST of Vigun01g138500.2 vs. DB:Swiss
Match: TRPA_MICAN (Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=trpA PE=3 SV=1) HSP 1 Score: 302.753 bits (774), Expect = 1.272e-102 Identity = 146/262 (55.73%), Postives = 187/262 (71.37%), Query Frame = 1 Query: 22 GLSETFTRLRKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEAL 807 ++E F LR +G A IP+ITAGDPDLSTTA+AL++LD G+D+IELGVPYSDPLADGPVIQ+AATR+L +G ++ ++K E+ PI LFTYYNPI RG + F+ ++ GV GLVVPD+PLEE E+L A GIE++LL PT+P +R++AI ++GF+YLVS GVTG R V+ V+ LL I+ T KPV VGFGIS+P QV WGAD VIVGSAMVK L + SP +GLK LE F R+LK+A+ Sbjct: 3 AVTECFRSLRSQGNCALIPFITAGDPDLSTTAQALRILDRAGADLIELGVPYSDPLADGPVIQSAATRALNRGVKLEDVLEIVKNAQGEVKAPIILFTYYNPIYHRGIDVFLDQIKAAGVSGLVVPDLPLEEAESLLQPAAAKGIEVILLVAPTSPPERIQAIALQSQGFIYLVSVTGVTGMRKQVATRVEELLDSIRSVTDKPVGVGFGISEPTQALQVKNWGADAVIVGSAMVKRLAD-NSPSDGLKSLEEFCRSLKQAI 263
BLAST of Vigun01g138500.2 vs. DB:Swiss
Match: TRPA_SYNY3 (Tryptophan synthase alpha chain OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=trpA PE=3 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 1.168e-101 Identity = 143/261 (54.79%), Postives = 191/261 (73.18%), Query Frame = 1 Query: 25 LSETFTRLRKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEAL 807 ++ F LR+ G+ A IP++TAGDPDL+TTAEAL++LD G+D+IELGVPYSDPLADGPVIQAAATR+L KG + ++++++EV +++ PI LFTYYNPI +G E F+ ++ GV GLVVPD+PLEE++ L + G+EL+LL PT+ +R AI ++GFVYLVS GVTG R+ V V++LL +++ T KP+ VGFGIS+PE +QV WGAD VIVGSAMVK L E +P EGL+ LE F R LK A+ Sbjct: 4 VAACFNALRQRGECALIPFLTAGDPDLATTAEALRILDRAGADLIELGVPYSDPLADGPVIQAAATRALQKGVKLDDVLAIVREVHQDIAAPIILFTYYNPIFYQGVEVFLDKIKAAGVKGLVVPDLPLEESDRLLEATAERGLELILLVAPTSSPERQTAIAKKSQGFVYLVSVTGVTGVRTEVGSRVEALLAGMRQVTDKPIGVGFGISQPEQAEQVKAWGADAVIVGSAMVKRLAEG-TPTEGLQALETFCRELKTAI 263
BLAST of Vigun01g138500.2 vs. DB:Swiss
Match: TRPA_TRIEI (Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=trpA PE=3 SV=1) HSP 1 Score: 298.516 bits (763), Expect = 7.406e-101 Identity = 148/262 (56.49%), Postives = 189/262 (72.14%), Query Frame = 1 Query: 25 LSETFTRLRKEG-KVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEAL 807 +S+ F LR + A IP+ITAGDPDL TTA+AL+VLD G+++IELGVPYSDPLADGPVIQAAATRSL +GT +++ +++ V P+L PI LFTYYNPIL RG E F+ + + G GLVVPD+PLEE + L AK GIEL LL PT+PK+R+KAI ++GF+YLVS GVTG R+ + V+ LL +++E T KP+ VGFGIS+PE QV WG+D VIVGSA+VK L E SP EGLK + F + LK A+ Sbjct: 4 VSDCFESLRNNSSQCALIPFITAGDPDLETTAKALEVLDRSGANMIELGVPYSDPLADGPVIQAAATRSLNRGTTLESVLEVVQTVSPKLRSPIILFTYYNPILYRGVENFLKKIYDVGARGLVVPDLPLEEADILLEPAKDIGIELTLLVAPTSPKERIKAIAHQSQGFIYLVSVTGVTGMRAQMQTRVEDLLAQMREVTDKPIGVGFGISQPEQALQVKKWGSDAVIVGSAVVKRLAEG-SPDEGLKAIGEFCQNLKAAI 264
BLAST of Vigun01g138500.2 vs. DB:Swiss
Match: TRPA_SYNP2 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=trpA PE=3 SV=1) HSP 1 Score: 295.434 bits (755), Expect = 8.639e-100 Identity = 139/261 (53.26%), Postives = 193/261 (73.95%), Query Frame = 1 Query: 25 LSETFTRLRKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIVRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKDRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEAFARTLKEAL 807 +SE F L++ G+ A IP+ITAGDPDL TT +ALK+LD+ G+D IELGVPYSDPLADGP IQAAATR+L++G ++++++ V +L+ PI LFTYYNPI RG + FM+ V GV GLV+PD+PLEE++ + A +G++L+LL PT+P +R++AI A++GF+YLVS GVTGAR+SV+ V LL ++++ T KP+ VGFG+S P +Q+ WGADGVIVGSA+VK L +P EGL ++ F +LKEA+ Sbjct: 4 VSERFRSLKQAGQCALIPFITAGDPDLETTEQALKILDAAGADFIELGVPYSDPLADGPTIQAAATRALSRGVTLEQVLAIVQRVHGQLTAPIILFTYYNPIFYRGIDAFMAQVAAAGVKGLVIPDLPLEESQMVLDAATSHGLDLILLVAPTSPTERIEAIAKASQGFIYLVSVTGVTGARTSVASRVGELLPKLRQVTDKPIGVGFGVSDPAQARQLKEWGADGVIVGSAVVKRLATG-TPAEGLAAVKEFCESLKEAI 263 The following BLAST results are available for this feature:
BLAST of Vigun01g138500.2 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g138500.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g138500.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g138500.2; organism=Vigna unguiculata; type=mRNA; length=3105bpback to top protein sequence of Vigun01g138500.2_Vu_IT97K-499-35_v1.1 >Vigun01g138500.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g138500.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g138500.2_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=271bpback to top mRNA from alignment at Vu01:31874085..31880663- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g138500.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g138500.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g138500.2; organism=Vigna unguiculata; type=mRNA; length=6579bp; location=Sequence derived from: Vu01:31874085..31880663- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:31874085..31880663- >Vigun01g138500.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g138500.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g138500.2; organism=Vigna unguiculata; type=CDS; length=813bp; location=Sequence derived from: Vu01:31874085..31880663- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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