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Transcript Overview
| Name | Vigun01g152500.1 |
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| Unique Name | Vigun01g152500.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1054 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun01g152500.1 | Vigun01g152500.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun01g152500.1_Vu_IT97K-499-35_v1.1 | Vigun01g152500.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g152500.1.v1.1.CDS.2 | Vigun01g152500.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g152500.1.v1.1.CDS.1 | Vigun01g152500.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun01g152500.1.v1.1.three_prime_UTR.1 | Vigun01g152500.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g152500.1.v1.1.five_prime_UTR.1 | Vigun01g152500.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 67..103 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 175..190 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 146..190 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 154..170 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g152500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g152500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g152500.1; organism=Vigna unguiculata; type=mRNA; length=1054bp
TTGCCTCAGTACCTGATACCATTGATGGACATGTGCTCTCATGACAATTT
TGTAAACATTCTTGGAATGACTTTTAGTGAGTCACTTCGTATTGAAGATG
CTCAGAAACCTCTACACGATCCCGAGGGGAATGATATCTGTAGTGAGAGT
GACGAAAATTTGTGTGGAGCAATTAACAAGCAAGAGACAAAAGTAAACAT
GATGTGCTTGACGAAATCTGCAACCTTCCCAACTCCTAATAGAATACAGC
CTTCAAGCTCGTCTGATGAGGATGCCAATACATCGGTCACAGAATCACTC
TCTGAGCATTCTGCTCATCAAACTTACTCACGCTCAATATCTCTGCCTGT
TCCTCTGAAGCTCGTATCTGCCATGAAAGGTAGCCGTGAGAAACAAGGGG
GATCACAGGTGAAACTAAATGTGAAATGGGCGCCCGATGTGTATGATCCG
ATACCTACATTGTTATCACACACTGTCAAAAGCAACAAGAAGCAGCAGAA
ATCTAGAAAGAAGAAGCCTGAAAAGAAGAATGGAAAGAAGGGTCAAAAGG
GAAATTCGTCTAAAGGTGGCAACAGCAAAGATAAGCAGTTTCGTAAGCTG
AGTGGAACTTCTGGTTTGTGCTACAAATCGATGGATTCTTGTGATAAAGT
GCTTGTAGCTTCTGCTGAATTAGATGCTCTTGATGTTCCTAGCGCGGATT
CCAACTGTGGAACTAGCTTCTTGAAAAAATCTGTTACTGAAGTGCACTAC
TCAGTTGCAGAAGCGCTTTGAGTGAAACGCTATGAATGTTTTGTACTCTT
CCCCTTCTCTTTGTATATAAATAAGCACTGTTTTACGGTTGGCTTGTATT
GTGAAAAAAAGAAGGATTGGACGGTGAAAGTTGTTTGACGCTCTTAGAGC
ACGGGCAGTTAAGTTTGCATTTTTTatatgctgtgatgtgatgtgatgag
aCAAATTCTGGTAGATGTGTCATTTCTGTTTTCATGACATCAATTTTAAC
TAGGGATTTTGGAAGTACTTTGTTTGTTTTTTTGTTGTTGATTGATAACA
TGTG back to topprotein sequence of Vigun01g152500.1_Vu_IT97K-499-35_v1.1 >Vigun01g152500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g152500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g152500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=249bp
MDMCSHDNFVNILGMTFSESLRIEDAQKPLHDPEGNDICSESDENLCGAI
NKQETKVNMMCLTKSATFPTPNRIQPSSSSDEDANTSVTESLSEHSAHQT
YSRSISLPVPLKLVSAMKGSREKQGGSQVKLNVKWAPDVYDPIPTLLSHT
VKSNKKQQKSRKKKPEKKNGKKGQKGNSSKGGNSKDKQFRKLSGTSGLCY
KSMDSCDKVLVASAELDALDVPSADSNCGTSFLKKSVTEVHYSVAEAL* back to topmRNA from alignment at Vu01:33506238..33508225- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun01g152500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g152500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g152500.1; organism=Vigna unguiculata; type=mRNA; length=1988bp; location=Sequence derived from: Vu01:33506238..33508225- (Vigna unguiculata
TTGCCTCAGTACCTGATACCATTGATGGACATGTGCTCTCATGACAATTT
TGTAAACATTCTTGGAATGACTTTTAGTGAGTCACTTCGTATTGAAGATG
CTCAGAAACCTCTACACGATCCCGAGGGGAATGATATCTGTAGTGAGAGT
GACGAAAATTTGTGTGGAGCAATTAACAAGCAAGAGACAAAAGTAAACAT
GATGTGCTTGACGAAATCTGCAACCTTCCCAACTCCTAATAGAATACAGC
CTTCAAGCTCGTCTGATGAGGATGCCAATACATCGGTCACAGAATCACTC
TCTGAGCATTCTGCTCATCAAACTTACTCACGCTCAATATCTCTGCCTGT
AAGTTCCTAGATTCATTAATAGCTGTGTACACTGTTACTAATGCTTGAAT
GTGGTTTTGTAAGATATATATGATTTATTTGACAAAACACTGAAAGGTTT
AGAAAGTATTGTTTGGCTTTTTCTGTAAATAAATTCTTTGTTTTTTATTG
ACAATTGCTTTCTTGTACTCGGTCTAGGGTATTAGGTTGTTGTGCTCTCT
GTTCTGCTCTTTATTCAAGCGTTTCTAGCTATGTCAAGAGGCAATAAATT
ATGCAGTATGAAACACATTTGAAAATTTATGAAGGAATGCACGGAGTGTT
TCTTGTTATGAAACACATTTTGAAAATTTATTAAGTATTAAATGATGTTT
ATGCCTACCTTTCCCCTCTTTCTCATTTTTGTTTCGAACAATCAACAAGG
AAGATTTTGTTCTGCATTTTCTAACTATATAGCCATCAATTTTTCATTGC
AACTGAAATATTGGTGCTTTATTGTGGTTACTTATTTAGACCAACTCTGC
AATTTTTATCTTTCCTATCTGAATATATTTCAACCCTTCAATCTTATTAT
GTTCATGCCCATGACAATGTCCATTTTAAGTTAGGAATCAGTTCATTAAT
TACATTGTTTTGAGAGTATCTTGAATTAGTTATATTTAGCATCTTGTGTG
GTGGTTTTTTTGTTAGGTTTGCGTTTCTATTGATAATGGAGTAAATGTAT
CTTGTAAGGTTAGTATAACATTATCTTTCACATTTCCCTTCCCATCCAGA
GAGAAGTGAGATTTGAAGAGATTAGAAAGTTTTCACCTTACTGTATATGC
ATTAAAGACAAGTTGATGGAGTCACATTATCTGAAGCATAGTTTTTTAAC
AGATATTGTGGACTGATATCTATCTTAGCATGTGGCATTTCTGGTTTACG
GAGATTCAGTTTTTGTGTATTTTATACCACAGGTTCCTCTGAAGCTCGTA
TCTGCCATGAAAGGTAGCCGTGAGAAACAAGGGGGATCACAGGTGAAACT
AAATGTGAAATGGGCGCCCGATGTGTATGATCCGATACCTACATTGTTAT
CACACACTGTCAAAAGCAACAAGAAGCAGCAGAAATCTAGAAAGAAGAAG
CCTGAAAAGAAGAATGGAAAGAAGGGTCAAAAGGGAAATTCGTCTAAAGG
TGGCAACAGCAAAGATAAGCAGTTTCGTAAGCTGAGTGGAACTTCTGGTT
TGTGCTACAAATCGATGGATTCTTGTGATAAAGTGCTTGTAGCTTCTGCT
GAATTAGATGCTCTTGATGTTCCTAGCGCGGATTCCAACTGTGGAACTAG
CTTCTTGAAAAAATCTGTTACTGAAGTGCACTACTCAGTTGCAGAAGCGC
TTTGAGTGAAACGCTATGAATGTTTTGTACTCTTCCCCTTCTCTTTGTAT
ATAAATAAGCACTGTTTTACGGTTGGCTTGTATTGTGAAAAAAAGAAGGA
TTGGACGGTGAAAGTTGTTTGACGCTCTTAGAGCACGGGCAGTTAAGTTT
GCATTTTTTATATGCTGTGATGTGATGTGATGAGACAAATTCTGGTAGAT
GTGTCATTTCTGTTTTCATGACATCAATTTTAACTAGGGATTTTGGAAGT
ACTTTGTTTGTTTTTTTGTTGTTGATTGATAACATGTG back to topCoding sequence (CDS) from alignment at Vu01:33506238..33508225- >Vigun01g152500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g152500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g152500.1; organism=Vigna unguiculata; type=CDS; length=747bp; location=Sequence derived from: Vu01:33506238..33508225- (Vigna unguiculata
ATGGACATGTGCTCTCATGACAATTTTGTAAACATTCTTGGAATGACTTT
TAGTGAGTCACTTCGTATTGAAGATGCTCAGAAACCTCTACACGATCCCG
AGGGGAATGATATCTGTAGTGAGAGTGACGAAAATTTGTGTGGAGCAATT
AACAAGCAAGAGACAAAAGTAAACATGATGTGCTTGACGAAATCTGCAAC
CTTCCCAACTCCTAATAGAATACAGCCTTCAAGCTCGTCTGATGAGGATG
CCAATACATCGGTCACAGAATCACTCTCTGAGCATTCTGCTCATCAAACT
TACTCACGCTCAATATCTCTGCCTGTTCCTCTGAAGCTCGTATCTGCCAT
GAAAGGTAGCCGTGAGAAACAAGGGGGATCACAGGTGAAACTAAATGTGA
AATGGGCGCCCGATGTGTATGATCCGATACCTACATTGTTATCACACACT
GTCAAAAGCAACAAGAAGCAGCAGAAATCTAGAAAGAAGAAGCCTGAAAA
GAAGAATGGAAAGAAGGGTCAAAAGGGAAATTCGTCTAAAGGTGGCAACA
GCAAAGATAAGCAGTTTCGTAAGCTGAGTGGAACTTCTGGTTTGTGCTAC
AAATCGATGGATTCTTGTGATAAAGTGCTTGTAGCTTCTGCTGAATTAGA
TGCTCTTGATGTTCCTAGCGCGGATTCCAACTGTGGAACTAGCTTCTTGA
AAAAATCTGTTACTGAAGTGCACTACTCAGTTGCAGAAGCGCTTTGA back to top
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