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Transcript Overview
| Name | Vigun01g154500.1 |
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| Unique Name | Vigun01g154500.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1074 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g154500.1 | Vigun01g154500.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun01g154500.1_Vu_IT97K-499-35_v1.1 | Vigun01g154500.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g154500.1.v1.1.five_prime_UTR.1 | Vigun01g154500.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun01g154500.1.v1.1.CDS.1 | Vigun01g154500.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g154500.1.v1.1.three_prime_UTR.1 | Vigun01g154500.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 77..103 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g154500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g154500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g154500.1; organism=Vigna unguiculata; type=mRNA; length=1074bp
TTTCCCCCACTTGGCTTGTGTTTTGGCAGCGTATGGAAGCTTCAAAACAC
ACTTAAAACTAGGCTTCAACATCACATACTCTCTCACACACAACAACTAA
CACCGAAAAACGCAGTCATTGCAAATCATGGCACATGATAGCCTCACAAA
TAATGTCCACTACAAATCCATTCAATCATTATTAGTCTTTTCCTTTCCAC
ACCCctttcttctaatctaagttttttcttctttcttcctttctCCTTTT
TCATTTAACTCTTCTCAATTTATACCCACTCTCACCCGAGAGAGGTCACa
agaagaagaagaagaagaaaagaTACGATACGATACGATGACCTCGGTTT
GCATATCGCAGTGCCTCAACGACGCACGTGACCCACGTGTTCCGGTGAGG
GCGACGTACGTGAACCTTTACAAGTGGCCGGAATCGGATGCGGAGTTTGT
GAGGTCAGTGAGTTGCAACAGAGAAAAGGGTTGCCACGTGTACGGACACC
CCAGAGTGGTGGACAGTATCTCCTGCAGGCAGATGTATCTCAGAAGCTAC
ACCTTCTCCAGGGAAGAAGATAACGACGCCGACAAACCTCACAAATGTTT
TGGCGCCAAGAAGAAGAAACGTCacaacaacaacaacaacTCAAAGCCCG
ACACCGGCAAAACAAAGTGCTTCGTTTGGAGTAAGGCTAAGGAGATCTCG
TGTTCTGCTCTCTCTCGGATTTTCCGAAGGGTCTTGTTCTGCTCCGCGAG
TGTAGATGTTGTCCACGATAAATATTGAattttgttttttatttcaatct
cctcttcttctttttttatatttatatatatactctgtttctatttatGA
TCCAGTGAGAAGAAATTGTTAGTGCCTCTCTTTTTTCAATTTGCTTTCTT
TTATTAACTTTTGTACAAGAGTGCGTTATGTAAAAATTTTGTCTTACAGA
GAAAGGTTTATGATGATTTTTACCACTGTTTCTGCTTGTAATGCTGTGTT
TGCCTTGTGGCAACTTCTTTTGTGGGCTTATACAGAAAAATGTATATGTT
TTTTGCTTAATATTTGGATATCAG back to topprotein sequence of Vigun01g154500.1_Vu_IT97K-499-35_v1.1 >Vigun01g154500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g154500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g154500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=147bp
MTSVCISQCLNDARDPRVPVRATYVNLYKWPESDAEFVRSVSCNREKGCH
VYGHPRVVDSISCRQMYLRSYTFSREEDNDADKPHKCFGAKKKKRHNNNN
NSKPDTGKTKCFVWSKAKEISCSALSRIFRRVLFCSASVDVVHDKY* back to topmRNA from alignment at Vu01:33716336..33717409- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun01g154500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g154500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g154500.1; organism=Vigna unguiculata; type=mRNA; length=1074bp; location=Sequence derived from: Vu01:33716336..33717409- (Vigna unguiculata
TTTCCCCCACTTGGCTTGTGTTTTGGCAGCGTATGGAAGCTTCAAAACAC
ACTTAAAACTAGGCTTCAACATCACATACTCTCTCACACACAACAACTAA
CACCGAAAAACGCAGTCATTGCAAATCATGGCACATGATAGCCTCACAAA
TAATGTCCACTACAAATCCATTCAATCATTATTAGTCTTTTCCTTTCCAC
ACCCCTTTCTTCTAATCTAAGTTTTTTCTTCTTTCTTCCTTTCTCCTTTT
TCATTTAACTCTTCTCAATTTATACCCACTCTCACCCGAGAGAGGTCACA
AGAAGAAGAAGAAGAAGAAAAGATACGATACGATACGATGACCTCGGTTT
GCATATCGCAGTGCCTCAACGACGCACGTGACCCACGTGTTCCGGTGAGG
GCGACGTACGTGAACCTTTACAAGTGGCCGGAATCGGATGCGGAGTTTGT
GAGGTCAGTGAGTTGCAACAGAGAAAAGGGTTGCCACGTGTACGGACACC
CCAGAGTGGTGGACAGTATCTCCTGCAGGCAGATGTATCTCAGAAGCTAC
ACCTTCTCCAGGGAAGAAGATAACGACGCCGACAAACCTCACAAATGTTT
TGGCGCCAAGAAGAAGAAACGTCACAACAACAACAACAACTCAAAGCCCG
ACACCGGCAAAACAAAGTGCTTCGTTTGGAGTAAGGCTAAGGAGATCTCG
TGTTCTGCTCTCTCTCGGATTTTCCGAAGGGTCTTGTTCTGCTCCGCGAG
TGTAGATGTTGTCCACGATAAATATTGAATTTTGTTTTTTATTTCAATCT
CCTCTTCTTCTTTTTTTATATTTATATATATACTCTGTTTCTATTTATGA
TCCAGTGAGAAGAAATTGTTAGTGCCTCTCTTTTTTCAATTTGCTTTCTT
TTATTAACTTTTGTACAAGAGTGCGTTATGTAAAAATTTTGTCTTACAGA
GAAAGGTTTATGATGATTTTTACCACTGTTTCTGCTTGTAATGCTGTGTT
TGCCTTGTGGCAACTTCTTTTGTGGGCTTATACAGAAAAATGTATATGTT
TTTTGCTTAATATTTGGATATCAG back to topCoding sequence (CDS) from alignment at Vu01:33716336..33717409- >Vigun01g154500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g154500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g154500.1; organism=Vigna unguiculata; type=CDS; length=441bp; location=Sequence derived from: Vu01:33716336..33717409- (Vigna unguiculata
ATGACCTCGGTTTGCATATCGCAGTGCCTCAACGACGCACGTGACCCACG
TGTTCCGGTGAGGGCGACGTACGTGAACCTTTACAAGTGGCCGGAATCGG
ATGCGGAGTTTGTGAGGTCAGTGAGTTGCAACAGAGAAAAGGGTTGCCAC
GTGTACGGACACCCCAGAGTGGTGGACAGTATCTCCTGCAGGCAGATGTA
TCTCAGAAGCTACACCTTCTCCAGGGAAGAAGATAACGACGCCGACAAAC
CTCACAAATGTTTTGGCGCCAAGAAGAAGAAACGTCACAACAACAACAAC
AACTCAAAGCCCGACACCGGCAAAACAAAGTGCTTCGTTTGGAGTAAGGC
TAAGGAGATCTCGTGTTCTGCTCTCTCTCGGATTTTCCGAAGGGTCTTGT
TCTGCTCCGCGAGTGTAGATGTTGTCCACGATAAATATTGA back to top
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