Vigun01g177700.2
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g177700.2 vs. DB:Swiss
Match: UEV1D_ARATH (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UEV1D PE=1 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 7.521e-91 Identity = 131/146 (89.73%), Postives = 140/146 (95.89%), Query Frame = 1
Query: 1 MTLGSAGSSVVVPRNFRXXXXXXXXXXXIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQMKKEMAASHNRKLIQPPEGTCY 438
MTLGS GSSVVVPRNFRLLEELE+GEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGP+NTVHEGRIYQLKLFCDKDYPEKPPTVRFHSR+NM CVNHETGVV+ KKFGLLANWQR +TMEDIL Q+KKEM+ SHNRKL+QPPEGTC+
Sbjct: 1 MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEGTCF 146
BLAST of Vigun01g177700.2 vs. DB:Swiss
Match: UEV1C_ARATH (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UEV1C PE=1 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 3.769e-90 Identity = 134/146 (91.78%), Postives = 144/146 (98.63%), Query Frame = 1
Query: 1 MTLGSAGSSVVVPRNFRXXXXXXXXXXXIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQMKKEMAASHNRKLIQPPEGTCY 438
MTLGS GSSVVVPRNFRLLEELE+GEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGP+NTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNH+TGVV+SKKFG+LANWQR++TMEDILTQ+KKEMAASHNRKL+QPPEGT +
Sbjct: 1 MTLGS-GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEGTFF 145
BLAST of Vigun01g177700.2 vs. DB:Swiss
Match: UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 3.861e-68 Identity = 104/141 (73.76%), Postives = 119/141 (84.40%), Query Frame = 1
Query: 7 LGSAGSSVVVPRNFRXXXXXXXXXXXIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQMKKEMAASHNRKLIQPPEG 429
+ S + VVVPRNFRLLEELE+GEKGIGDGTVSYGMDD DDIYM+SWTGTI+GP NT +EG+I+QLKLFC K+YPE PPTVRF +RINM CVN ETGVVE F +L NW+R +TMEDIL ++KKEM SHNRKL QPPEG
Sbjct: 1 MSSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEG 141
BLAST of Vigun01g177700.2 vs. DB:Swiss
Match: UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UEV1B PE=1 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.600e-66 Identity = 103/142 (72.54%), Postives = 118/142 (83.10%), Query Frame = 1
Query: 7 LGSAGSSVVVPRNFRXXXXXXXXXXXIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQMKKEMAASHNRKLIQPPEGT 432
+GS VVVPRNFRLLEELE+GEKGIGDGTVSYGMDD DDI M+SWTGTI+GP+NT +EG+I+QLKLFC KDYPE PPTVRF SRINM CVN E GVV+ F +L+NW+R FTMED+L Q+KKEM +S NRKL QP EG
Sbjct: 1 MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEGN 142
BLAST of Vigun01g177700.2 vs. DB:Swiss
Match: UBE2V_DICDI (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=44689 GN=ube2v PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 2.646e-50 Identity = 76/137 (55.47%), Postives = 104/137 (75.91%), Query Frame = 1
Query: 28 VVVPRNFRXXXXXXXXXXXIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQMKKEMAASHNRKLIQPPEGTCY 438
+PRNF LLEELE GEK GDGT+SYG++ DDI + SW GTIIGP NT + R Y LKL+CDKDYP KPPTVRF ++IN+ CVN + GVV+ K +L+NW + +++IL+++++EM++S N+KL+QPPEG +
Sbjct: 2 TTIPRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEGANF 138
BLAST of Vigun01g177700.2 vs. DB:Swiss
Match: UB2V1_HUMAN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo sapiens OX=9606 GN=UBE2V1 PE=1 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 1.226e-44 Identity = 74/143 (51.75%), Postives = 102/143 (71.33%), Query Frame = 1
Query: 10 GSAGSSVVVPRNFRXXXXXXXXXXXIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQMKKEMAASHNRKLIQPPEGTCY 438
+ GS V VPRNFRLLEELE+G+KG+GDGTVS+G++D +D+ + WTG IIGP T++E RIY LK+ C YPE PP VRF ++INM VN GVV+ + +LA WQ ++++ +L ++++ M + N KL QPPEG CY
Sbjct: 3 ATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 145
BLAST of Vigun01g177700.2 vs. DB:Swiss
Match: UB2V1_BOVIN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos taurus OX=9913 GN=UBE2V1 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.226e-44 Identity = 74/143 (51.75%), Postives = 102/143 (71.33%), Query Frame = 1
Query: 10 GSAGSSVVVPRNFRXXXXXXXXXXXIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQMKKEMAASHNRKLIQPPEGTCY 438
+ GS V VPRNFRLLEELE+G+KG+GDGTVS+G++D +D+ + WTG IIGP T++E RIY LK+ C YPE PP VRF ++INM VN GVV+ + +LA WQ ++++ +L ++++ M + N KL QPPEG CY
Sbjct: 3 ATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 145
BLAST of Vigun01g177700.2 vs. DB:Swiss
Match: UB2V1_MOUSE (Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus musculus OX=10090 GN=Ube2v1 PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.309e-44 Identity = 74/143 (51.75%), Postives = 103/143 (72.03%), Query Frame = 1
Query: 10 GSAGSSVVVPRNFRXXXXXXXXXXXIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQMKKEMAASHNRKLIQPPEGTCY 438
+ GS V VPRNFRLLEELE+G+KG+GDGTVS+G++D +D+ + WTG IIGP T++E RIY LK+ C YPE PP+VRF +R+NM+ V+ GVV+ + +LA WQ +++ IL ++++ M + N KL QPPEG CY
Sbjct: 3 ATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQPPEGQCY 145
BLAST of Vigun01g177700.2 vs. DB:Swiss
Match: UB2V1_CHICK (Ubiquitin-conjugating enzyme E2 variant 1 OS=Gallus gallus OX=9031 GN=UBE2V1 PE=2 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 2.371e-44 Identity = 74/142 (52.11%), Postives = 102/142 (71.83%), Query Frame = 1
Query: 13 SAGSSVVVPRNFRXXXXXXXXXXXIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQMKKEMAASHNRKLIQPPEGTCY 438
+A + V VPRNFRLLEELE+G+KG+GDGTVS+G++D +D+ + WTG IIGP T++E RIY LK+ C YPE PP VRF ++INM VN GVV+ + +LA WQ F+++ +L ++++ M + N KL QPPEG CY
Sbjct: 2 AATTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSFSIKVVLQELRRLMMSKENMKLPQPPEGQCY 143
BLAST of Vigun01g177700.2 vs. DB:Swiss
Match: MMS2_SCHPO (Ubiquitin-conjugating enzyme spm2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spm2 PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 9.107e-44 Identity = 75/135 (55.56%), Postives = 99/135 (73.33%), Query Frame = 1
Query: 34 VPRNFRXXXXXXXXXXXIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQMKKEMAASHNRKLIQPPEGTCY 438
VPRNF+LLEELEKGEKG+G+ + SYG+ + DDI + W TI+GP ++VHE RIY LK+ CD +YP+ PP V F SRIN+ V+ ETG V K L +W+R ++ME +L +KKEMA+S NRKL QPPEG+ +
Sbjct: 4 VPRNFKLLEELEKGEKGLGESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138 The following BLAST results are available for this feature:
BLAST of Vigun01g177700.2 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g177700.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g177700.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g177700.2; organism=Vigna unguiculata; type=mRNA; length=779bpback to top protein sequence of Vigun01g177700.2_Vu_IT97K-499-35_v1.1 >Vigun01g177700.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g177700.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g177700.2_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=147bpback to top mRNA from alignment at Vu01:35882684..35886622+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g177700.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g177700.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g177700.2; organism=Vigna unguiculata; type=mRNA; length=3939bp; location=Sequence derived from: Vu01:35882684..35886622+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:35882684..35886622+ >Vigun01g177700.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g177700.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g177700.2; organism=Vigna unguiculata; type=CDS; length=441bp; location=Sequence derived from: Vu01:35882684..35886622+ (Vigna unguiculataback to top |