Vigun01g180300.1

Transcript Overview
NameVigun01g180300.1
Unique NameVigun01g180300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length2137
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:36114326..36117173 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR003Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuR019Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuR026Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL193Pisum sativum Cameor genome v1aPisum sativum
psvuL194Pisum sativum Cameor genome v1aPisum sativum
crvuL003Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuL382Pisum sativum Cameor genome v1aPisum sativum
crvuL220Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL000Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL474Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL578Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL006Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL164Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0225Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL260Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL458Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0474Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0545Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0655Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0866Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0870Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0924Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1026Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1154Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL091Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL327Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL406Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL575Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR021Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR037Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR043Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL121Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL114Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL353Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL331Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL581Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL538Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vssvuL013Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuL194Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL238Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL171Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuL577Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL437Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL756Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR000Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR018Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL005Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL143Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL221Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL424Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL270Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL337Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL500Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL001Cicer arietinum
carvuL159Cicer arietinum
carvuL236Cicer arietinum
ccavuL070Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL184Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL259Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL354Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR019Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR036Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR059Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR013Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR058Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL307Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL448Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL486Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL548Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL324Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL504Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL553Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL000Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL403Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL502Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR003Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR014Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR018Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan03g249300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_04G02591.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cr_05453.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Va03G076290.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_00860Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_19803Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_003198Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_07907.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat03G0121800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
evm.model.Chr01.1723.1.62113177Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
PvulFLAVERTChr01.1001331Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_004494195.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigan.04G353700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.04G229700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Phvul.001G195900.3Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun01g180300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g180300Vigun01g180300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g180300.1_Vu_IT97K-499-35_v1.1Vigun01g180300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide
Vigun01g180300.1Vigun01g180300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g180300.1.v1.1.CDS.2Vigun01g180300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun01g180300.1.v1.1.CDS.1Vigun01g180300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g180300.1.v1.1.three_prime_UTR.1Vigun01g180300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g180300.1.v1.1.five_prime_UTR.2Vigun01g180300.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR
Vigun01g180300.1.v1.1.five_prime_UTR.1Vigun01g180300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
[Close]
BLAST of Vigun01g180300.1 vs. DB:Swiss
Match: Y3567_ARATH (BTB/POZ domain-containing protein At3g05675 OS=Arabidopsis thaliana OX=3702 GN=At3g05675 PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 2.094e-120
Identity = 179/300 (59.67%), Postives = 232/300 (77.33%), Query Frame = 1 
Query:    1 MEPIDKEEKIACVIGDRLTSDVIVRLRTPEGRDDWLYCHSENLVKNCKYFADRLSENWPTCQILDSRNCVDIYCQELDFDYHVNLIRLLYTVIDG-SVDDLWHGVRNALGILQVAVELGCPQIITACVNYLEAVTWXXXXXXXILRIVPRMGLQAEPILARLQPVKQSAIINIFVSAIRFATSSPSPNMNDLKSSAQEQLEYMLTEDDDAPLLTADDNIKVEVKECVNRLFARFIDSVTGFFSGTTES--LSEEGNFQLFQSYLTDLSWACQILSKLEIMREFVEYWSDASEKIVKVLNK 891
            MEP D + + +   GDR +SD++VRLR  EGRDDW+YCHS+ L +  +YFADRLS+ WPTC+ILDSR CV++ CQE D+D+H+NL+RLLY V D    D+L H V++ALGIL VA EL CPQI+TACVNYLEAV WEE EEEEILRIVPR+G +AEPILARLQPV QSA++ IFVSA RFATSSP   + D+KSSAQEQ+EYM+TEDDDAPLL AD+ +K+EVK+CV  LF RF   +        ES  ++++G+F++    L+D+ W  QIL+K+E++R+FV  W+D SEK+VKV+ +
Sbjct:    1 MEPRDNQAEASYTFGDRSSSDIVVRLRNEEGRDDWIYCHSKILSEKSQYFADRLSDKWPTCKILDSRYCVEVICQESDYDHHINLLRLLYVVSDDVHEDNLCHNVKSALGILSVAKELSCPQIVTACVNYLEAVPWEEGEEEEILRIVPRIGSEAEPILARLQPVDQSAVLEIFVSAFRFATSSPPLLLGDIKSSAQEQIEYMITEDDDAPLLIADEEVKLEVKQCVKSLFVRFFQCLEEITLKPVESEVINKKGSFRMV---LSDMCWVFQILTKMEVVRDFVITWADISEKLVKVVEQ 297
[Close]
BLAST of Vigun01g180300.1 vs. DB:Swiss
Match: Y3078_ARATH (BTB/POZ domain-containing protein At3g50780 OS=Arabidopsis thaliana OX=3702 GN=At3g50780 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 3.931e-7
Identity = 75/294 (25.51%), Postives = 123/294 (41.84%), Query Frame = 1 
Query:   25 KIACVIGDRLTSDVIVRLRTPEGRDDWLYCHSENLVKNCKYFADRLSENWPTCQILDSRNCVDIYCQELDFDYHVNLIRLLYTVIDGSVDDLWHGVRNALGILQVAVELGCPQIITACVNYLEAVTW-----XXXXXXXILRIVPRMGLQAEPILARLQ-----PVKQ--SAIINIFVSAIRFATSSPSPNMNDLKSSAQEQLEYMLTEDDDAPLL-TADDNIKVEVKECVNRLFARFIDSVTGFFSGTTESLSEEGNFQLFQSYLTDLSWACQILSKLEIMREFVEYWSDASE 867
            K+A   G+  +SD  V L   +G    L  H + LV +  +FA +L+E       L+  +C D        + +V  I L+Y   D     +   V   L +L+VA  LG    I +C++YLEAV W     EE     ILR+    G+   P+L R+      P K+  S II + +       S    +  ++KS   +    +L E + A +    +D I    + C        +DSV   F   +E    E + +       +L+W   +L++ +   EF   W++  E
Sbjct:  114 KVAIEFGEPGSSDAKVILVGKQGFCVKLSVHKKVLVDHSCFFAKKLAEKDSVFACLEIESCEDA-------ELYVETIGLMY-CKDMKQRLMKQNVSRVLRVLKVAELLGFSSCIQSCLDYLEAVPWVGEEEEEKVISSILRLKTE-GVGVTPVLKRVASNAVDPPKETLSRIIELVLR------SKEEKSRREMKSIVLK----LLREQNGANVADNFNDTIYSSCQTC--------LDSVLSLFKQASEGEKPETDTKQIAVEADNLTWLLDVLAERQAAEEFSVTWANQKE 380
The following BLAST results are available for this feature:
BLAST of Vigun01g180300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
Y3567_ARATH2.094e-12059.67BTB/POZ domain-containing protein At3g05675 OS=Ara... [more]
Y3078_ARATH3.931e-725.51BTB/POZ domain-containing protein At3g50780 OS=Ara... [more]
back to top
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.710.10coord: 4..151
e-value: 6.4E-8
score: 34.5
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 17..130

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g180300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g180300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g180300.1; organism=Vigna unguiculata; type=mRNA; length=2137bp
GTTGATTAGGCACATTGGTTGTTAAAAAATGAATAAAGTGTGCATAGATT
TAATAGAATGATGTATATATATCCATGCAAGTTGAGCAAGTTGGCAAGTT
GGGAAAGGaaaaacataaaaaaaaaaaaaaaaaGGGAACGCAACGATGCG
TTTAAAGTCGATAAGAAGCAGCAATGGGTAATAGGACAGGAGAGTGCGTG
TTCTTCATTCCTCGTTCCTCAGATTGAAGCTTTTTAACTCTGAACTCACA
TGGAATACCTAATAGATCCGGTGTAGAAATATCGCTTCTCACTGCTCTTA
ATCTCGATGGAACCTATTGATAAAGAAGAAAAAATCGCTTGTGTGATTGG
TGACCGATTAACTAGTGATGTTATTGTGAGGCTACGCACTCCGGAAGGTC
GAGATGATTGGCTATACTGCCACTCGGAGAATCTTGTAAAAAACTGCAAG
TACTTTGCGGATAGGTTGTCTGAGAACTGGCCAACATGTCAGATCCTTGA
TTCGCGCAATTGTGTCGATATCTATTGCCAAGAGTTGGATTTTGATTACC
ATGTCAATCTTATACGTCTTCTCTACACTGTCATAGATGGTTCAGTTGAT
GATTTGTGGCATGGTGTTAGAAATGCCCTTGGCATTCTCCAGGTCGCGGT
TGAACTTGGATGCCCGCAGATAATAACTGCCTGTGTGAACTACTTAGAAG
CTGTTACATGGGAGGAGGCTGAGGAGGAAGAGATTTTGAGAATTGTACCT
CGAATGGGATTACAAGCTGAACCTATCCTAGCTAGACTTCAACCAGTTAA
GCAGTCTGCTATCATAAATATCTTTGTCTCTGCTATCCGTTTTGCTACAT
CATCCCCATCACCAAATATGAATGATCTTAAATCTTCAGCACAAGAGCAA
CTTGAGTACATGCTAACTGAAGATGATGATGCCCCTTTATTGACAGCTGA
TGACAACATAAAAGTCGAAGTAAAAGAATGTGTAAACAGACTGTTTGCCC
GGTTTATCGACTCAGTAACAGGTTTTTTCTCTGGTACTACAGAGTCACTC
TCTGAGGAGGGAAATTTTCAGTTGTTTCAATCCTATTTGACTGATTTGTC
GTGGGCATGTCAGATATTGAGTAAGTTGGAAATAATGAGAGAATTTGTTG
AGTATTGGTCTGATGCATCAGAAAAAATTGTCAAGGTTCTTAACAAGGAA
GTTCTACAACTGAAGTCATTGAGATAAAGTTACGAGCTGTTGAGGTGACA
TCAAAGGTTTTAGAGGCAATTGGTTATGGCACTGTTATATTGCCAACAGC
AAAACGCCTTCAAGTTTTGAAAGTGTGGCTTCCGTTTGTGAGGGTTACAA
AACCATTGATTGATTCTGTTACAACGAATTGTGAGAATGCTATGCTGCTT
AAATTAGATGGCGAAATGTGGCAATCCTTAGAATCCACCTTTGTATCTAT
CATTCTTGCATTGCCATCAGGGGATCAGGCAGAGATTTTAACTGAGTGGC
TGGATAACGAGTATATGCAGTATCCAGACTTAACTGAGGCATTTGAAGTA
TGGTGTTATAGGTCCAAGGTTGCTAAAAGAAGACTATCATTGGTAGGGGA
TGAGCATGCCATGACAAACTCATTTTGAGGCTTTCACAAATTCTGTTAGT
TTTTTATTAGACTACTAATCCAAGATCTTGTCAAGGCATTGCGAAGAAAT
CATCTCCTTTTACACATGAATGAAATTTTTTGTTGGAGGCATTTTGAATC
TCCATATCTCAACAATTCAATGTAAATTATTTTGAGGAGTTTTGTAAAAT
GTTGTATGTAAAGATGTAGTTTTGAAATAATTTATTTCATAGCAAACAAA
ATCATGAGACACTGCTTTTTGACGTTGGATTTGCTTGGACATTTCTAATT
AAAGGGAGATGCTGCGCAAGACAGGTTCCGCACCTTGGTCTGTTAACTCA
ATTTTGAGTGCTGCTTTTGATCGGAAAGAAGAAAAGAAGAAATTCTCCCC
GGTTCCGAGCAGCATCAATGAAGATAAAACAGGAATTGAGTTTGAGAGAA
TAGAATTCGAATAACTGCTTGGAAAATTGAAATTGAAAATTCTCGTTATG
TGCATAACAATTTAATTTCCCAAATCCTATTATGCTG
back to top

protein sequence of Vigun01g180300.1_Vu_IT97K-499-35_v1.1

>Vigun01g180300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g180300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g180300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=307bp
MEPIDKEEKIACVIGDRLTSDVIVRLRTPEGRDDWLYCHSENLVKNCKYF
ADRLSENWPTCQILDSRNCVDIYCQELDFDYHVNLIRLLYTVIDGSVDDL
WHGVRNALGILQVAVELGCPQIITACVNYLEAVTWEEAEEEEILRIVPRM
GLQAEPILARLQPVKQSAIINIFVSAIRFATSSPSPNMNDLKSSAQEQLE
YMLTEDDDAPLLTADDNIKVEVKECVNRLFARFIDSVTGFFSGTTESLSE
EGNFQLFQSYLTDLSWACQILSKLEIMREFVEYWSDASEKIVKVLNKEVL
QLKSLR*
back to top

mRNA from alignment at Vu01:36114326..36117173-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g180300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g180300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g180300.1; organism=Vigna unguiculata; type=mRNA; length=2848bp; location=Sequence derived from: Vu01:36114326..36117173- (Vigna unguiculata
GTTGATTAGGCACATTGGTTGTTAAAAAATGAATAAAGTGTGCATAGATT
TAATAGAATGATGTATATATATCCATGCAAGTTGAGCAAGTTGGCAAGTT
GGGAAAGGAAAAACATAAAAAAAAAAAAAAAAAGGGAACGCAACGATGCG
TTTAAAGTCGATAAGAAGCAGCAATGGGTAATAGGACAGGAGAGTGCGTG
TTCTTCATTCCTCGTTCCTCAGATTGAAGCTTTTTAACTCTGAACTCACA
TGGAATACCTAATAGATCCGGTACATCTTTCACTCTCACTCATTTAATCA
CCATTTACGCTTCCCATTTTCACTGTTTTTCATTTCCCATCATTTCTTTG
TTTCGCTTTGCCTCCATTTCAATTTCGTACTGTTACACACAATTCACTCA
AGATCCCATGCTGCTTACTTACATCTCTCTTTCACACTTGTGTTTTTCAC
CTATTTTCCAACTTTAATTCTTGTTTTCTGATTGCAGGTGTAGAAATATC
GCTTCTCACTGCTCTTAATCTCGATGGAACCTATTGTGAGTTTGTTTCTC
CACCTTTTCCCCTTCTATTTTGTTCCACTGTCAGATTTCACCACTGTTAA
TCTCACTTTATTAATCTTTAAAATTCAAAAAAAAAAAAAAGTAGGTTTCT
ATACAATCTTCTTTCTTGGATTGCTTTCCCATCTACATCAATGTACGTCA
AACGTTTAATCACATGCAAGGGTAATTTGTGAATTGGAGTGCCTCAATCT
TCAACATTAACAATGATCAAGGTTTTAAATTTTAGTTCTGGTTAAATTGC
GTTCCTTGGTAGTTTGGGAAATAGCTGACAAATTCGTCCAATGCAGTTAC
ATTGCAGTCGCATACACCTTAAAAACCTTAATAGTGATTGCGGATCCCTT
TGCAAAACATTGACAATAGATCATCTGTTGCGGATTTTTCAGTTTGTTAT
TTCAGTGTACCACCTAAATGTACGGTGCCACAGTCTCTTGTTTCTGTTAT
TATTGATGATATTATCCTCTTTCGCCCAGGATAAAGAAGAAAAAATCGCT
TGTGTGATTGGTGACCGATTAACTAGTGATGTTATTGTGAGGCTACGCAC
TCCGGAAGGTCGAGATGATTGGCTATACTGCCACTCGGAGAATCTTGTAA
AAAACTGCAAGTACTTTGCGGATAGGTTGTCTGAGAACTGGCCAACATGT
CAGATCCTTGATTCGCGCAATTGTGTCGATATCTATTGCCAAGAGTTGGA
TTTTGATTACCATGTCAATCTTATACGTCTTCTCTACACTGTCATAGATG
GTTCAGTTGATGATTTGTGGCATGGTGTTAGAAATGCCCTTGGCATTCTC
CAGGTCGCGGTTGAACTTGGATGCCCGCAGATAATAACTGCCTGTGTGAA
CTACTTAGAAGCTGTTACATGGGAGGAGGCTGAGGAGGAAGAGATTTTGA
GAATTGTACCTCGAATGGGATTACAAGCTGAACCTATCCTAGCTAGACTT
CAACCAGTTAAGCAGTCTGCTATCATAAATATCTTTGTCTCTGCTATCCG
TTTTGCTACATCATCCCCATCACCAAATATGAATGATCTTAAATCTTCAG
CACAAGAGCAACTTGAGTACATGCTAACTGAAGATGATGATGCCCCTTTA
TTGACAGCTGATGACAACATAAAAGTCGAAGTAAAAGAATGTGTAAACAG
ACTGTTTGCCCGGTTTATCGACTCAGTAACAGGTTTTTTCTCTGGTACTA
CAGAGTCACTCTCTGAGGAGGGAAATTTTCAGTTGTTTCAATCCTATTTG
ACTGATTTGTCGTGGGCATGTCAGATATTGAGTAAGTTGGAAATAATGAG
AGAATTTGTTGAGTATTGGTCTGATGCATCAGAAAAAATTGTCAAGGTTC
TTAACAAGGAAGTTCTACAACTGAAGTCATTGAGATAAAGTTACGAGCTG
TTGAGGTGACATCAAAGGTTTTAGAGGCAATTGGTTATGGCACTGTTATA
TTGCCAACAGCAAAACGCCTTCAAGTTTTGAAAGTGTGGCTTCCGTTTGT
GAGGGTTACAAAACCATTGATTGATTCTGTTACAACGAATTGTGAGAATG
CTATGCTGCTTAAATTAGATGGCGAAATGTGGCAATCCTTAGAATCCACC
TTTGTATCTATCATTCTTGCATTGCCATCAGGGGATCAGGCAGAGATTTT
AACTGAGTGGCTGGATAACGAGTATATGCAGTATCCAGACTTAACTGAGG
CATTTGAAGTATGGTGTTATAGGTCCAAGGTTGCTAAAAGAAGACTATCA
TTGGTAGGGGATGAGCATGCCATGACAAACTCATTTTGAGGCTTTCACAA
ATTCTGTTAGTTTTTTATTAGACTACTAATCCAAGATCTTGTCAAGGCAT
TGCGAAGAAATCATCTCCTTTTACACATGAATGAAATTTTTTGTTGGAGG
CATTTTGAATCTCCATATCTCAACAATTCAATGTAAATTATTTTGAGGAG
TTTTGTAAAATGTTGTATGTAAAGATGTAGTTTTGAAATAATTTATTTCA
TAGCAAACAAAATCATGAGACACTGCTTTTTGACGTTGGATTTGCTTGGA
CATTTCTAATTAAAGGGAGATGCTGCGCAAGACAGGTTCCGCACCTTGGT
CTGTTAACTCAATTTTGAGTGCTGCTTTTGATCGGAAAGAAGAAAAGAAG
AAATTCTCCCCGGTTCCGAGCAGCATCAATGAAGATAAAACAGGAATTGA
GTTTGAGAGAATAGAATTCGAATAACTGCTTGGAAAATTGAAATTGAAAA
TTCTCGTTATGTGCATAACAATTTAATTTCCCAAATCCTATTATGCTG
back to top

Coding sequence (CDS) from alignment at Vu01:36114326..36117173-

>Vigun01g180300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g180300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g180300.1; organism=Vigna unguiculata; type=CDS; length=921bp; location=Sequence derived from: Vu01:36114326..36117173- (Vigna unguiculata
ATGGAACCTATTGATAAAGAAGAAAAAATCGCTTGTGTGATTGGTGACCG
ATTAACTAGTGATGTTATTGTGAGGCTACGCACTCCGGAAGGTCGAGATG
ATTGGCTATACTGCCACTCGGAGAATCTTGTAAAAAACTGCAAGTACTTT
GCGGATAGGTTGTCTGAGAACTGGCCAACATGTCAGATCCTTGATTCGCG
CAATTGTGTCGATATCTATTGCCAAGAGTTGGATTTTGATTACCATGTCA
ATCTTATACGTCTTCTCTACACTGTCATAGATGGTTCAGTTGATGATTTG
TGGCATGGTGTTAGAAATGCCCTTGGCATTCTCCAGGTCGCGGTTGAACT
TGGATGCCCGCAGATAATAACTGCCTGTGTGAACTACTTAGAAGCTGTTA
CATGGGAGGAGGCTGAGGAGGAAGAGATTTTGAGAATTGTACCTCGAATG
GGATTACAAGCTGAACCTATCCTAGCTAGACTTCAACCAGTTAAGCAGTC
TGCTATCATAAATATCTTTGTCTCTGCTATCCGTTTTGCTACATCATCCC
CATCACCAAATATGAATGATCTTAAATCTTCAGCACAAGAGCAACTTGAG
TACATGCTAACTGAAGATGATGATGCCCCTTTATTGACAGCTGATGACAA
CATAAAAGTCGAAGTAAAAGAATGTGTAAACAGACTGTTTGCCCGGTTTA
TCGACTCAGTAACAGGTTTTTTCTCTGGTACTACAGAGTCACTCTCTGAG
GAGGGAAATTTTCAGTTGTTTCAATCCTATTTGACTGATTTGTCGTGGGC
ATGTCAGATATTGAGTAAGTTGGAAATAATGAGAGAATTTGTTGAGTATT
GGTCTGATGCATCAGAAAAAATTGTCAAGGTTCTTAACAAGGAAGTTCTA
CAACTGAAGTCATTGAGATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR011333SKP1/BTB/POZ_sf