Vigun01g181300.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.006e-15 Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 1 Query: 10 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASK-----FLDEPETWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGNIQLKYPTWDESYNVLEEEQLRMFVGILDAKLD--ACNQRMNMFK 432 I +K R TT++KRK L KK EFSTLC V+ +I++ + EPE WP+D +++ +I+KY +T S K +VE + ++ K E+ + + KY +W+E + EQL +D+KL+ Q +MF+ Sbjct: 11 IANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWPKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGK--GNEVVTKKRVKRENKYSSWEEKLDKCSREQLHGIFCAVDSKLNEAVTRQERSMFR 156
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 4.767e-13 Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1 Query: 1 MDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRE-LKRVIQKYLNTT-SDRRPKVYDVEEYFSERMKRIEGEISKVHKGNIQLK 318 + LI E++RKT+F KRKNG+ KK++E STLC V +I+ S F+ PE+WP RE K+V K+L + R K+ D E + ER+ + + ++ + N +L+ Sbjct: 6 LSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIY-SPFIPVPESWPS--REGAKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQ 110
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 8.151e-13 Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 1 Query: 1 MDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRE-LKRVIQKYLNT-TSDRRPKVYDVEEYFSERMKRIEGEISKVHKGNIQLK 318 + LI E++RKT+F KRK+G+ KK++E STLC V +I+ S F+ PE+WP RE K+V ++L + R K+ D E Y ER+ + + ++ + N +L+ Sbjct: 6 LSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIY-SPFIPVPESWPS--REGAKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQ 110
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 3.784e-11 Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1 Query: 1 MDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRE-LKRVIQKYLN-TTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGN 306 + LIE +RKTTF KRK G+ KK+ E TLC V+ +++ S F PE WP RE ++ V+ K++ + DR K+ D E + S+R+ + + ++ K+ N Sbjct: 7 LSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVY-SPFNSIPEAWPS--REGVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDEN 107
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida OX=4102 GN=FBP24 PE=1 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 2.164e-10 Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = 1 Query: 10 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRELKRVIQKYLNTTS------DRRPKVYDVEEYFSERMKRIEGEIS-KVHKGNIQLKYPTWDESYNVLEEEQLRMFVGILDAKLDACNQRMNMFKRDSK 444 IE + +R+ TF KR+ GL+KK +E S LC +G+IIF+SK + + P + ++I +YL TT D R ++YD E R + ++S + +KG+ L ++E N LE++ I KL+ Q+M K+ K Sbjct: 14 IENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSK--GKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQLYD--EVAKMRRDTLNLQLSLQRYKGD-DLSLAQYEE-LNELEKQLEHALNKIRARKLELMQQQMENLKKTEK 159
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana OX=3702 GN=TT16 PE=1 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.182e-9 Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 1 Query: 10 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFA-----SKFLDEPETWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFSERMKRIEGE 282 IE + AR+ TF KR+ GL+KK E S LC +G+I+F+ S+F E PQ +I +YL+T R P +D +E M+ + E Sbjct: 11 IENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQ-------LIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRE 99
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: AG103_ARATH (Agamous-like MADS-box protein AGL103 OS=Arabidopsis thaliana OX=3702 GN=AGL103 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.721e-9 Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 25 ARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRELKRVIQKY--LNTTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGNI----QLKYPTWDESYNVLEEEQLRMFVGILDAKLDACNQR 417 +R T+ KR+ + KK E S LC +DV VI + S E +TWP++ ++K + ++Y L+ T R+ V D+ E+ E+M + + E + K + ++KYP WD ++ EQL V L+ L R Sbjct: 31 SRATSLIKRQQTVFKKAKELSILCDIDVCVICYGSN--GELKTWPEEREKVKAIARRYGELSETKRRKGSV-DLHEFL-EKMNKDDPEKEEKKKIKVRRVPKVKYPVWDPRFDNYSVEQLMGLVQSLERNLTRIQHR 163
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus OX=3708 GN=AG1 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.223e-8 Identity = 39/141 (27.66%), Postives = 67/141 (47.52%), Query Frame = 1 Query: 10 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRELKRVIQKYLNTTSDRR--PKVYDVE-EYFSERMKRIEGEISKVHKGNIQLKYPTWDESYNVLEEEQLRMFVGILDAKLDACNQRMN 423 IE R+ TF KR+NGL+KK YE S LC +V +I+F+S+ + +K I++Y SD V ++ +Y+ + ++ +I + N QL E+ + ++LR G LD ++ + N Sbjct: 27 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSR----GRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQL----MGETIGSMSPKELRNLEGRLDRSVNRIRSKKN 159
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS2 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 1.948e-8 Identity = 45/145 (31.03%), Postives = 73/145 (50.34%), Query Frame = 1 Query: 10 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFAS--KFLD--EPETWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGN----IQLKYPTWDESYNVLEEEQLRMFVGILDAKLDACNQRM 420 IE R+ TF KR++G++KK E S LC +VGV+IF+S K D P+T L R+++KY + K+ + E+ K + EI ++ K N I+L++ E N L+ ++L M LD + N ++ Sbjct: 11 IENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKT------SLSRILEKYQTNSG----KI-----LWDEKHKSLSAEIDRIKKENDNMQIELRHLK-GEDLNSLQPKELIMIEEALDNGIVNVNDKL 139
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 PE=1 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 4.764e-8 Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 1 Query: 1 MDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRE-LKRVIQKYLN-TTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGN 306 + IE + RKTTF KRK G++KK E TLC VD +I S + E WP RE ++ V+ K++ + DR K+ D E + +R+ + + K+ N Sbjct: 7 LSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVI-RSPYNSIQEPWPS--REGVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDEN 107 The following BLAST results are available for this feature:
BLAST of Vigun01g181300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g181300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181300.1; organism=Vigna unguiculata; type=mRNA; length=948bpback to top protein sequence of Vigun01g181300.1_Vu_IT97K-499-35_v1.1 >Vigun01g181300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=316bpback to top mRNA from alignment at Vu01:36229927..36230874- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g181300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181300.1; organism=Vigna unguiculata; type=mRNA; length=948bp; location=Sequence derived from: Vu01:36229927..36230874- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:36229927..36230874- >Vigun01g181300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181300.1; organism=Vigna unguiculata; type=CDS; length=948bp; location=Sequence derived from: Vu01:36229927..36230874- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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