Vigun01g181300.1

Transcript Overview
NameVigun01g181300.1
Unique NameVigun01g181300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length948
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:36229927..36230874 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR019Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuR026Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL193Pisum sativum Cameor genome v1aPisum sativum
psvuL194Pisum sativum Cameor genome v1aPisum sativum
crvuL003Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL220Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL000Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL474Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL578Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL006Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL164Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0225Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL260Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0474Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0545Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0655Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0870Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1026Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1154Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL327Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL406Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL575Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR021Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR037Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR043Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL121Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL114Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL353Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL331Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL581Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL538Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vssvuL013Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuL238Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL577Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL437Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL756Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR000Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR018Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL005Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL143Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL221Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL270Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL337Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL500Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL001Cicer arietinum
carvuL159Cicer arietinum
carvuL236Cicer arietinum
ccavuL070Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL184Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL259Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR019Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR036Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR059Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR058Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL307Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL486Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL548Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL324Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL504Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL553Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL000Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL403Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL502Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR014Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR020Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr01.1733Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun01g181300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g181300Vigun01g181300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g181300.1Vigun01g181300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun01g181300.1_Vu_IT97K-499-35_v1.1Vigun01g181300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g181300.1.v1.1.CDS.1Vigun01g181300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.006e-15
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   10 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASK-----FLDEPETWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGNIQLKYPTWDESYNVLEEEQLRMFVGILDAKLD--ACNQRMNMFK 432
            I  +K R TT++KRK  L KK  EFSTLC V+  +I++         + EPE WP+D  +++ +I+KY +T S    K  +VE + ++  K    E+    +   + KY +W+E  +    EQL      +D+KL+     Q  +MF+
Sbjct:   11 IANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWPKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGK--GNEVVTKKRVKRENKYSSWEEKLDKCSREQLHGIFCAVDSKLNEAVTRQERSMFR 156          
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.767e-13
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 MDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRE-LKRVIQKYLNTT-SDRRPKVYDVEEYFSERMKRIEGEISKVHKGNIQLK 318
            + LI  E++RKT+F KRKNG+ KK++E STLC V    +I+ S F+  PE+WP   RE  K+V  K+L    + R  K+ D E +  ER+ + + ++  +   N +L+
Sbjct:    6 LSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIY-SPFIPVPESWPS--REGAKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQ 110          
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.151e-13
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 MDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRE-LKRVIQKYLNT-TSDRRPKVYDVEEYFSERMKRIEGEISKVHKGNIQLK 318
            + LI  E++RKT+F KRK+G+ KK++E STLC V    +I+ S F+  PE+WP   RE  K+V  ++L    + R  K+ D E Y  ER+ + + ++  +   N +L+
Sbjct:    6 LSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIY-SPFIPVPESWPS--REGAKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQ 110          
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.784e-11
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 MDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRE-LKRVIQKYLN-TTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGN 306
            + LIE   +RKTTF KRK G+ KK+ E  TLC V+   +++ S F   PE WP   RE ++ V+ K++  +  DR  K+ D E + S+R+ + + ++ K+   N
Sbjct:    7 LSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVY-SPFNSIPEAWPS--REGVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDEN 107          
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida OX=4102 GN=FBP24 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.164e-10
Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   10 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRELKRVIQKYLNTTS------DRRPKVYDVEEYFSERMKRIEGEIS-KVHKGNIQLKYPTWDESYNVLEEEQLRMFVGILDAKLDACNQRMNMFKRDSK 444
            IE + +R+ TF KR+ GL+KK +E S LC   +G+IIF+SK   +   +   P  + ++I +YL TT       D R ++YD  E    R   +  ++S + +KG+  L    ++E  N LE++       I   KL+   Q+M   K+  K
Sbjct:   14 IENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSK--GKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQLYD--EVAKMRRDTLNLQLSLQRYKGD-DLSLAQYEE-LNELEKQLEHALNKIRARKLELMQQQMENLKKTEK 159          
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana OX=3702 GN=TT16 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.182e-9
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 1
Query:   10 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFA-----SKFLDEPETWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFSERMKRIEGE 282
            IE + AR+ TF KR+ GL+KK  E S LC   +G+I+F+     S+F  E    PQ       +I +YL+T   R P  +D +E     M+ +  E
Sbjct:   11 IENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQ-------LIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRE 99          
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: AG103_ARATH (Agamous-like MADS-box protein AGL103 OS=Arabidopsis thaliana OX=3702 GN=AGL103 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.721e-9
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 1
Query:   25 ARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRELKRVIQKY--LNTTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGNI----QLKYPTWDESYNVLEEEQLRMFVGILDAKLDACNQR 417
            +R T+  KR+  + KK  E S LC +DV VI + S    E +TWP++  ++K + ++Y  L+ T  R+  V D+ E+  E+M + + E  +  K  +    ++KYP WD  ++    EQL   V  L+  L     R
Sbjct:   31 SRATSLIKRQQTVFKKAKELSILCDIDVCVICYGSN--GELKTWPEEREKVKAIARRYGELSETKRRKGSV-DLHEFL-EKMNKDDPEKEEKKKIKVRRVPKVKYPVWDPRFDNYSVEQLMGLVQSLERNLTRIQHR 163          
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus OX=3708 GN=AG1 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.223e-8
Identity = 39/141 (27.66%), Postives = 67/141 (47.52%), Query Frame = 1
Query:   10 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRELKRVIQKYLNTTSDRR--PKVYDVE-EYFSERMKRIEGEISKVHKGNIQLKYPTWDESYNVLEEEQLRMFVGILDAKLDACNQRMN 423
            IE    R+ TF KR+NGL+KK YE S LC  +V +I+F+S+       +      +K  I++Y    SD      V ++  +Y+ +   ++  +I  +   N QL      E+   +  ++LR   G LD  ++    + N
Sbjct:   27 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSR----GRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQL----MGETIGSMSPKELRNLEGRLDRSVNRIRSKKN 159          
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS2 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.948e-8
Identity = 45/145 (31.03%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   10 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFAS--KFLD--EPETWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGN----IQLKYPTWDESYNVLEEEQLRMFVGILDAKLDACNQRM 420
            IE    R+ TF KR++G++KK  E S LC  +VGV+IF+S  K  D   P+T       L R+++KY   +     K+      + E+ K +  EI ++ K N    I+L++    E  N L+ ++L M    LD  +   N ++
Sbjct:   11 IENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKT------SLSRILEKYQTNSG----KI-----LWDEKHKSLSAEIDRIKKENDNMQIELRHLK-GEDLNSLQPKELIMIEEALDNGIVNVNDKL 139          
BLAST of Vigun01g181300.1 vs. DB:Swiss
Match: PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 4.764e-8
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 1
Query:    1 MDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPETWPQDPRE-LKRVIQKYLN-TTSDRRPKVYDVEEYFSERMKRIEGEISKVHKGN 306
            +  IE +  RKTTF KRK G++KK  E  TLC VD   +I  S +    E WP   RE ++ V+ K++  +  DR  K+ D E +  +R+ +    + K+   N
Sbjct:    7 LSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVI-RSPYNSIQEPWPS--REGVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDEN 107          
The following BLAST results are available for this feature:
BLAST of Vigun01g181300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
AGL82_ARATH6.006e-1532.43Agamous-like MADS-box protein AGL82 OS=Arabidopsis... [more]
AGL90_ARATH4.767e-1337.96Agamous-like MADS-box protein AGL90 OS=Arabidopsis... [more]
AGL36_ARATH8.151e-1337.04Agamous-like MADS-box protein AGL36 OS=Arabidopsis... [more]
PHE2_ARATH3.784e-1136.54MADS-box transcription factor PHERES 2 OS=Arabidop... [more]
FBP24_PETHY2.164e-1031.58MADS-box protein FBP24 OS=Petunia hybrida OX=4102 ... [more]
TT16_ARATH1.182e-935.42Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
AG103_ARATH1.721e-931.39Agamous-like MADS-box protein AGL103 OS=Arabidopsi... [more]
AG_BRANA1.223e-827.66Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
MADS2_ORYSJ1.948e-831.03MADS-box transcription factor 2 OS=Oryza sativa su... [more]
PHE1_ARATH4.764e-834.62MADS-box transcription factor PHERES 1 OS=Arabidop... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 31..52
score: 26.82
coord: 16..31
score: 64.09
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..54
e-value: 2.9E-10
score: 50.1
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 4..43
e-value: 4.5E-19
score: 67.7
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..44
score: 16.428
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 6..91
e-value: 3.9E-17
score: 64.0
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 2..83
IPR033897MADS SRF-likeCDDcd00266MADS_SRF_likecoord: 1..66
e-value: 2.72942E-18
score: 76.1447

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g181300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181300.1; organism=Vigna unguiculata; type=mRNA; length=948bp
ATGGATCTGATCGAGAAAGAGAAGGCTCGAAAGACAACATTTCAGAAGAG
AAAGAACGGATTAATGAAGAAAGTTTACGAGTTTTCGACTCTTTGTTCAG
TTGACGTTGGTGTGATTATCTTTGCCTCAAAGTTTCTCGATGAACCTGAA
ACATGGCCACAAGACCCAAGAGAGTTGAAACGTGTGATTCAGAAATATCT
GAACACCACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATT
TCAGTGAAAGGATGAAAAGGATTGAAGGTGAGATTTCCAAAGTGCACAAA
GGGAACATCCAACTCAAGTACCCAACCTGGGATGAATCTTACAATGTTCT
TGAAGAGGAACAATTGAGGATGTTTGTTGGCATTCTGGATGCTAAGCTTG
ATGCTTGTAATCAAAGGATGAACATGTTCAAGCGTGATTCGAAGGGAAAA
GCAATAGCAGAATCAGACTATGATGGTAGTCACCTCAGTTTTATGCAGAA
CATGTCTCAAACACAGAACATGTCTCAAACACAGGTTTTTCCTACTAATG
ATAACAGTCAAGTAACATCATATTCATGTCATCAGAGTCAAAGTTCTCTA
CCTACTTTGTTTCAACTAGGTCAAAACTGTACCCAATTGATTGAAAAAAG
TACAGTAGTGGATTGGAGTAATCAAGTTGGTGCAAGTGATCACAGAATGA
GTACACAAGAAGATGGATTAGACAAAAACCAAAACTCCTTACCATGTTTT
TACAATGCAAATATTCAAACAATGCATCCATATAATAATGTTGCTTTGCA
AACTCTCCCTTCTCAATTGCAGTACGATGCAACATTTCAGACCCTGTCAA
ATCGACCAGGTCCATCACAGGGATTTACGCCTAATGGCTATGATCATTCT
ACTATACTTCAACCTCATTTTTTAGACCATATACACAGAAGAAAGTAG
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protein sequence of Vigun01g181300.1_Vu_IT97K-499-35_v1.1

>Vigun01g181300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=316bp
MDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPE
TWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFSERMKRIEGEISKVHK
GNIQLKYPTWDESYNVLEEEQLRMFVGILDAKLDACNQRMNMFKRDSKGK
AIAESDYDGSHLSFMQNMSQTQNMSQTQVFPTNDNSQVTSYSCHQSQSSL
PTLFQLGQNCTQLIEKSTVVDWSNQVGASDHRMSTQEDGLDKNQNSLPCF
YNANIQTMHPYNNVALQTLPSQLQYDATFQTLSNRPGPSQGFTPNGYDHS
TILQPHFLDHIHRRK*
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mRNA from alignment at Vu01:36229927..36230874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g181300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181300.1; organism=Vigna unguiculata; type=mRNA; length=948bp; location=Sequence derived from: Vu01:36229927..36230874- (Vigna unguiculata
ATGGATCTGATCGAGAAAGAGAAGGCTCGAAAGACAACATTTCAGAAGAG AAAGAACGGATTAATGAAGAAAGTTTACGAGTTTTCGACTCTTTGTTCAG TTGACGTTGGTGTGATTATCTTTGCCTCAAAGTTTCTCGATGAACCTGAA ACATGGCCACAAGACCCAAGAGAGTTGAAACGTGTGATTCAGAAATATCT GAACACCACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATT TCAGTGAAAGGATGAAAAGGATTGAAGGTGAGATTTCCAAAGTGCACAAA GGGAACATCCAACTCAAGTACCCAACCTGGGATGAATCTTACAATGTTCT TGAAGAGGAACAATTGAGGATGTTTGTTGGCATTCTGGATGCTAAGCTTG ATGCTTGTAATCAAAGGATGAACATGTTCAAGCGTGATTCGAAGGGAAAA GCAATAGCAGAATCAGACTATGATGGTAGTCACCTCAGTTTTATGCAGAA CATGTCTCAAACACAGAACATGTCTCAAACACAGGTTTTTCCTACTAATG ATAACAGTCAAGTAACATCATATTCATGTCATCAGAGTCAAAGTTCTCTA CCTACTTTGTTTCAACTAGGTCAAAACTGTACCCAATTGATTGAAAAAAG TACAGTAGTGGATTGGAGTAATCAAGTTGGTGCAAGTGATCACAGAATGA GTACACAAGAAGATGGATTAGACAAAAACCAAAACTCCTTACCATGTTTT TACAATGCAAATATTCAAACAATGCATCCATATAATAATGTTGCTTTGCA AACTCTCCCTTCTCAATTGCAGTACGATGCAACATTTCAGACCCTGTCAA ATCGACCAGGTCCATCACAGGGATTTACGCCTAATGGCTATGATCATTCT ACTATACTTCAACCTCATTTTTTAGACCATATACACAGAAGAAAGTAG
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Coding sequence (CDS) from alignment at Vu01:36229927..36230874-

>Vigun01g181300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181300.1; organism=Vigna unguiculata; type=CDS; length=948bp; location=Sequence derived from: Vu01:36229927..36230874- (Vigna unguiculata
ATGGATCTGATCGAGAAAGAGAAGGCTCGAAAGACAACATTTCAGAAGAG
AAAGAACGGATTAATGAAGAAAGTTTACGAGTTTTCGACTCTTTGTTCAG
TTGACGTTGGTGTGATTATCTTTGCCTCAAAGTTTCTCGATGAACCTGAA
ACATGGCCACAAGACCCAAGAGAGTTGAAACGTGTGATTCAGAAATATCT
GAACACCACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATT
TCAGTGAAAGGATGAAAAGGATTGAAGGTGAGATTTCCAAAGTGCACAAA
GGGAACATCCAACTCAAGTACCCAACCTGGGATGAATCTTACAATGTTCT
TGAAGAGGAACAATTGAGGATGTTTGTTGGCATTCTGGATGCTAAGCTTG
ATGCTTGTAATCAAAGGATGAACATGTTCAAGCGTGATTCGAAGGGAAAA
GCAATAGCAGAATCAGACTATGATGGTAGTCACCTCAGTTTTATGCAGAA
CATGTCTCAAACACAGAACATGTCTCAAACACAGGTTTTTCCTACTAATG
ATAACAGTCAAGTAACATCATATTCATGTCATCAGAGTCAAAGTTCTCTA
CCTACTTTGTTTCAACTAGGTCAAAACTGTACCCAATTGATTGAAAAAAG
TACAGTAGTGGATTGGAGTAATCAAGTTGGTGCAAGTGATCACAGAATGA
GTACACAAGAAGATGGATTAGACAAAAACCAAAACTCCTTACCATGTTTT
TACAATGCAAATATTCAAACAATGCATCCATATAATAATGTTGCTTTGCA
AACTCTCCCTTCTCAATTGCAGTACGATGCAACATTTCAGACCCTGTCAA
ATCGACCAGGTCCATCACAGGGATTTACGCCTAATGGCTATGATCATTCT
ACTATACTTCAACCTCATTTTTTAGACCATATACACAGAAGAAAGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR036879TF_MADSbox_sf
IPR033897MADS_SRF-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000987cis-regulatory region sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription by RNA polymerase II