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Transcript Overview
Name | Vigun01g181900.9 |
Unique Name | Vigun01g181900.9_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 1848 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g181900.9 | Vigun01g181900.9_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun01g181900.9_Vu_IT97K-499-35_v1.1 | Vigun01g181900.9_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g181900.9.v1.1.five_prime_UTR.1 | Vigun01g181900.9.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Vigun01g181900.9.v1.1.five_prime_UTR.2 | Vigun01g181900.9.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g181900.9.v1.1.CDS.1 | Vigun01g181900.9.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g181900.9.v1.1.CDS.2 | Vigun01g181900.9.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g181900.9.v1.1.CDS.3 | Vigun01g181900.9.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g181900.9.v1.1.CDS.4 | Vigun01g181900.9.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g181900.9.v1.1.CDS.5 | Vigun01g181900.9.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g181900.9.v1.1.CDS.6 | Vigun01g181900.9.v1.1.CDS.6_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g181900.9.v1.1.CDS.7 | Vigun01g181900.9.v1.1.CDS.7_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g181900.9.v1.1.CDS.8 | Vigun01g181900.9.v1.1.CDS.8_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g181900.9.v1.1.CDS.9 | Vigun01g181900.9.v1.1.CDS.9_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g181900.9.v1.1.three_prime_UTR.1 | Vigun01g181900.9.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR023393 | START-like domain superfamily | GENE3D | 3.30.530.20 | | coord: 82..283 e-value: 6.6E-12 score: 47.0 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 472..495 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 464..529 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 501..516 |
None | No IPR available | SUPERFAMILY | 55961 | Bet v1-like | coord: 80..278 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g181900.9_Vu_IT97K-499-35_v1.1 ID=Vigun01g181900.9_Vu_IT97K-499-35_v1.1; Name=Vigun01g181900.9; organism=Vigna unguiculata; type=mRNA; length=1848bp ATTAAGCAAGAATAATGGAGTTATTAAGTAAAGTTTTCTTCATACTAATA AGCTTGATCTGGTTTAGTTGTTCCCATGTCTGCTGGCAAACGCATTGGTG TTCTTTCCTGAAACAACTCTGTCTCTTCTCTGTGTGAGAGATAGAGATGG TGAAAAAAGGAAACATTGTTCAGTACAGGGAGAGGTTGGACAAGAGCCTT GCCTTACCTGATCTGACAGATGAACAGATACTCAAAACCCTTGTTAAAAG TCAACTCCAAGGCTCATCAAAAGTGGAAATTGAAGGATGTAACGAGAAAT TAGTAGAAACCAAAACCAAGGAGATATATGACTTTCTTAGCATGTTGAGA AGTGCTTCTGGAGACAATAGTGCAGGATCTAGTACATCACGCTCTGATTG GAAATTAAAACAGGATACTGAAGATTTTCGAGTTATGTATCGCGAAGGAC CAGAGGGAACTCCCTTTCATACATTGCTAGTTGAAGGCTATGTGGATGGG CCTCTAGATCTCTCTTTGTGCCTTTCATGGGAGTCCTTCCTCTACAAGAA ATGGTGGCCTCAGTTTACTATTCCCAGTTTCAAAGTTCTGGTATCTGAAC GTTTGCAGAGAGTCCAGATTGGGGAACATATCTCACTAGTTAGGATGAAG GTTCCATGGCCTCTATCTACAAGGGAAGCTATAGTGCGTTATTATCTTTT TGAGTACTTTCAAGATGACTTAGTAGTTGTTCTTTTGAATACGGTCTCTG AGTCGACGAGCATTGACAATTTCAACATGAATGCAATTCCTGAGGCAAAG GATGTTGTGAGAATTGATTTGCTGGGAGGCTATGCAATGCAAAAGGTGTC ATCAGAAAGAAGTTATTTTCGGATAATAGGAAATTTGGATATAAAGCTGG ATTTTGTACCTCCATCCCTCATAAATTTCATTTCAAGGCAGCTCATCGGC AGTGGTTTCAGACTTTATCAGAAGGCTGTGGCTTCGATGATGAGCAATGA TAAAGATAAAGACATCAGCAAGGCCTTGGAGGACCCATTGTATGTTAGAA TACGCGAAGCTTTAGTAACTGGGGAAGAGCTTAAGCAAGATGCAAGGTTT GTTCAAGCTGAGGAACTTATTCAAAGTGAGAAAAATGGGGTAAAAGAGAA AGATATATCCTGTGAGTATATAAGCAACCAACGTGCAGGTGGTGAAGAAG ATGTAGAAGCAGGTTGTAAAGAGATTGTACAAGTTGAGGAAGATGTTAAC AAGGTACTTGAAGTTCCAATCGAGGAAGGTGATTCATTGAGTGTGCTGAT CAATGGCAAGGAGAATGGTGAGATTGAAGGTGCAGATAGTGAAGAGATTG TTGATATTGAAGGTGCAGATAGTGAAGAGATTGTTGAGATTGAGAAGGAA ATGAACAAAGTGGGTGGCATTCCAACTGAGAAAGATGGTGCAAGAAGTGT TCTGAAGGATAAGAGGAATGGTTATGTACGCTCAGATGTGAGAAGGGCTC TAGAAACAATAGAGAGGGTTATTTCAACGGTTAAGGAACATGGATTTCAT CCCCGAATGCCTACTTCAAACTCTGATGAGCAAAAGTTCCAGATGGAAAA AGTTGGCACAGTTGACTCAAGTTCTGCGAAACCTATTCAAGTATGTTTGA AGGATGATGATAGTGTCAAAGAATCAAGCAGCAATATACGGGAGGAAACT TCAGAAGAACCTGCGACGATACAAAGCTTCAGGTGATTTGTTTTACTCTT GTTATTTGAGTAATGTTATCTAATACTGGTTTACAGGGAAATCATTTTTG TATTGGGGCGTGTTATCCTTTAATATGATTTGTTTGGAAATATAAGCT back to topprotein sequence of Vigun01g181900.9_Vu_IT97K-499-35_v1.1 >Vigun01g181900.9_Vu_IT97K-499-35_v1.1 ID=Vigun01g181900.9_Vu_IT97K-499-35_v1.1; Name=Vigun01g181900.9_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=530bp MVKKGNIVQYRERLDKSLALPDLTDEQILKTLVKSQLQGSSKVEIEGCNE KLVETKTKEIYDFLSMLRSASGDNSAGSSTSRSDWKLKQDTEDFRVMYRE GPEGTPFHTLLVEGYVDGPLDLSLCLSWESFLYKKWWPQFTIPSFKVLVS ERLQRVQIGEHISLVRMKVPWPLSTREAIVRYYLFEYFQDDLVVVLLNTV SESTSIDNFNMNAIPEAKDVVRIDLLGGYAMQKVSSERSYFRIIGNLDIK LDFVPPSLINFISRQLIGSGFRLYQKAVASMMSNDKDKDISKALEDPLYV RIREALVTGEELKQDARFVQAEELIQSEKNGVKEKDISCEYISNQRAGGE EDVEAGCKEIVQVEEDVNKVLEVPIEEGDSLSVLINGKENGEIEGADSEE IVDIEGADSEEIVEIEKEMNKVGGIPTEKDGARSVLKDKRNGYVRSDVRR ALETIERVISTVKEHGFHPRMPTSNSDEQKFQMEKVGTVDSSSAKPIQVC LKDDDSVKESSSNIREETSEEPATIQSFR* back to topmRNA from alignment at Vu01:36273020..36276860+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun01g181900.9_Vu_IT97K-499-35_v1.1 ID=Vigun01g181900.9_Vu_IT97K-499-35_v1.1; Name=Vigun01g181900.9; organism=Vigna unguiculata; type=mRNA; length=3841bp; location=Sequence derived from: Vu01:36273020..36276860+ (Vigna unguiculata ATTAAGCAAGAATAATGGAGTTATTAAGTAAAGTTTTCTTCATACTAATA
AGCTTGATCTGGTTTAGTTGTTCCCATGTCTGCTGGCAAACGCATTGGTG
TTCTTTCCTGAAACAACTCTGTCTCTTCTCTGTGTGGTTAGGATAATTCA
CTGATTCTTGGTCGATGCAAATTTCAGATTTTTCTTGTATTAAAAACCAG
AGCTTATCAACCGAATGGTTCGTGCAAGTGGGGTTTGTTTTTAATAAAGT
TTCCTTCTTGAATTGGTATTAACGCCTATGTTTTAGCTATGAACTGGAAA
TGATTAGTACCTCTACTCACATGGTTTCATTAAATTTTGTCACCTGTTTC
TCTTGGGTGTATCCAAATTTTGTTGCCAAGTGTCTCAGAATTTTCAATAT
TTTTGAGTTTTATTGGGGCAACTTGGTAGCTAGCCCACACTCACAGCTTC
GAATGAACAACGTGTCTAAGAGTTATACACCTAAACACTCTCTTGGCCTT
TTTTTTTTCCTTTTGTTAACATTAGTGGGGCTAGTGGGAGAAATTTTCTG
GGACCAATTACTTGTTACAGTATGCTAATTTTGTTCTGTTTTCGATGAGA
TGTGAAATTGAACTTAATCTGAATGGATGTGGCTAGATAGTGTTTTTTAC
TCTCATCATTGGATTTCTATGATTTTGGCGAATGTTCAGTTTAGAATCTT
AAAATTATAAATGGTTGTTTGGCACATGACTTGCTGATAGAAGGCTGATT
CTTCTTTCCTTAGAGAGATAGAGATGGTGAAAAAAGGAAACATTGTTCAG
TACAGGGAGAGGTTGGACAAGAGCCTTGCCTTACCTGATCTGACAGATGA
ACAGATACTCAAAACCCTTGTTAAAAGTCAACTCCAAGGCTCATCAAAAG
TGGAAATTGAAGGTAATGATAGCATTTCCTAGTTCGCTTTGAGGTATTTT
GCAGAAAAGGTACTAGGTGACAGATGTTATTATTTTAGGTAGTTATGTTT
ATCTTCTTTTATTTGTTTATTCATTTGGTGTTTGCAGGATGTAACGAGAA
ATTAGTAGAAACCAAAACCAAGGAGATATATGACTTTCTTAGCATGTTGA
GAAGTGCTTCTGGAGACAATAGTGCAGGATCTAGTACATCACGCTCTGAT
TGGAAAGTAAGCTATGGATGTCATGTTTTCTTCCCCTTTCAATTGCTTAT
TTAGATCATCCTCGGTTGATTTATACCTTGAACCTTTGTATCTTGTAACA
TGTGAAACAAAGGAGCAACGTTTTTTTGTATTCTGGTTTGAAATTTTACT
TCCATAATTTATGTTGACATTTGACATGAACTTTTATTATATGAAATATT
AAGGTGAAATGCTAATTCTTATTAGAAAACAATAAAAACACGTTAAACAG
TTACATTATTTGATCAACTTCTTGCTTTTTTTAAACAGTTAAAACAGGAT
ACTGAAGATTTTCGAGTTATGTATCGCGAAGGACCAGAGGGAACTCCCTT
TCATACATTGCTAGTTGAAGGCTATGTGGATGGGCCTCTAGATCTCTGTG
AGTCATGCAACGATGAGCCAAAAATTTTAGCACAACCCTTTTAATTAGTT
TAACAAGGGTCATGTTGTGATCTTAACATGAGAAATTTAACCTTTGTTAC
TTACAATAACAGCTTTGTGCCTTTCATGGGAGTCCTTCCTCTACAAGAAA
TGGTGAAAATCATATTGCAATACGTGCCTTTGCTTCTATTTGACATTATT
TTTTTATAACATAGAAGTTATTTGATTCTGTGTTGGGGTATGTACCCTTT
TCACAATTTTCAATTTTTCCAGGTGGCCTCAGTTTACTATTCCCAGTTTC
AAAGTTCTGGTATCTGAACGTTTGCAGAGAGTCCAGATTGGGGAACATAT
CTCACTAGTTAGGTTTGTTTTGGCCCCATCAATTTAGTAAATTTACATTG
TAGTGTGTGTCACTGACCATGATAAAAACCTTTATTTTTGAATGCTTATT
ATGCTGCTGATTGTGGAAGAAAGGATGAAGGTTCCATGGCCTCTATCTAC
AAGGGAAGCTATAGTGCGTTATTATCTTTTTGAGTACTTTCAAGATGACT
TAGTAGTTGTTCTTTTGAATACGGTACTTCTTTATTTTTCTCTGGAAAGT
TAATTCTAAGTCAGATCATCCAAGCTTCGAGAAATCCATGTTTAATTTGT
TTTCAGGTCTCTGAGTCGACGAGCATTGACAATTTCAACATGAATGCAAT
TCCTGAGGCAAAGGATGTTGTGAGAATTGATTTGCTGGGAGGCTATGCAA
TGCAAAAGGTGTCATCAGAAAGAAGTTATTTTCGGTGAGTTTTAAGTCAG
TACTAAAAACTTAGAAGTAGCCTGCAAAAAGATGAGTACAAGTATTGAAT
ACGGTATGCATTGAGAATTGTTTTTAGGCCTATATAGTTAACTGAGCTTG
TTCACAAGGGAGAGAAGAGAACAGTTTCTCTTACCAAAACTCTTAATGTA
GTTGATATGTCTATATTTACTTGTCATCATGATTAGTGTAATACTCTTAG
ACTAATTCAAATGGCTTTAATTTTTAGAGTAATTGTATTGGTCAACTTCC
AAGATGTGGTGAAAAATGATAAAAGGATTTCGGTTCCAAGGCTTAAATTG
TGTAAAATTTTGTAGGATAATAGGAAATTTGGATATAAAGCTGGATTTTG
TACCTCCATCCCTCATAAATTTCATTTCAAGGCAGCTCATCGGCAGTGGT
TTCAGACTTTATCAGAAGGTTGTATATTCTTTTCAAATTTCATTTTCCTT
AAGATATCTAGGAGGGTTTACCCTGCTCATGAACTTATTGTCACTTTATT
TGCAAAGGCTAGTTAGAAGATTGGTTTCAGCTTATTTACCATTTTCTGCT
TGCTCATGTATACATTACATACTTATTATTTTGTATTACATCAACTTCTC
AAATTGTTATATTTTAGGCTGTGGCTTCGATGATGAGCAATGATAAAGAT
AAAGACATCAGCAAGGCCTTGGAGGACCCATTGTATGTTAGAATACGCGA
AGCTTTAGTAACTGGGGAAGAGCTTAAGCAAGATGCAAGGTTTGTTCAAG
CTGAGGAACTTATTCAAAGTGAGAAAAATGGGGTAAAAGAGAAAGATATA
TCCTGTGAGTATATAAGCAACCAACGTGCAGGTGGTGAAGAAGATGTAGA
AGCAGGTTGTAAAGAGATTGTACAAGTTGAGGAAGATGTTAACAAGGTAC
TTGAAGTTCCAATCGAGGAAGGTGATTCATTGAGTGTGCTGATCAATGGC
AAGGAGAATGGTGAGATTGAAGGTGCAGATAGTGAAGAGATTGTTGATAT
TGAAGGTGCAGATAGTGAAGAGATTGTTGAGATTGAGAAGGAAATGAACA
AAGTGGGTGGCATTCCAACTGAGAAAGATGGTGCAAGAAGTGTTCTGAAG
GATAAGAGGAATGGTTATGTACGCTCAGATGTGAGAAGGGCTCTAGAAAC
AATAGAGAGGGTTATTTCAACGGTTAAGGAACATGGATTTCATCCCCGAA
TGCCTACTTCAAACTCTGATGAGCAAAAGTTCCAGATGGAAAAAGTTGGC
ACAGTTGACTCAAGTTCTGCGAAACCTATTCAAGTATGTTTGAAGGATGA
TGATAGTGTCAAAGAATCAAGCAGCAATATACGGGAGGAAACTTCAGAAG
AACCTGCGACGATACAAAGCTTCAGGTGATTTGTTTTACTCTTGTTATTT
GAGTAATGTTATCTAATACTGGTTTACAGGGAAATCATTTTTGTATTGGG
GCGTGTTATCCTTTAATATGATTTGTTTGGAAATATAAGCT back to topCoding sequence (CDS) from alignment at Vu01:36273020..36276860+ >Vigun01g181900.9_Vu_IT97K-499-35_v1.1 ID=Vigun01g181900.9_Vu_IT97K-499-35_v1.1; Name=Vigun01g181900.9; organism=Vigna unguiculata; type=CDS; length=1590bp; location=Sequence derived from: Vu01:36273020..36276860+ (Vigna unguiculata ATGGTGAAAAAAGGAAACATTGTTCAGTACAGGGAGAGGTTGGACAAGAG CCTTGCCTTACCTGATCTGACAGATGAACAGATACTCAAAACCCTTGTTA AAAGTCAACTCCAAGGCTCATCAAAAGTGGAAATTGAAGGATGTAACGAG AAATTAGTAGAAACCAAAACCAAGGAGATATATGACTTTCTTAGCATGTT GAGAAGTGCTTCTGGAGACAATAGTGCAGGATCTAGTACATCACGCTCTG ATTGGAAATTAAAACAGGATACTGAAGATTTTCGAGTTATGTATCGCGAA GGACCAGAGGGAACTCCCTTTCATACATTGCTAGTTGAAGGCTATGTGGA TGGGCCTCTAGATCTCTCTTTGTGCCTTTCATGGGAGTCCTTCCTCTACA AGAAATGGTGGCCTCAGTTTACTATTCCCAGTTTCAAAGTTCTGGTATCT GAACGTTTGCAGAGAGTCCAGATTGGGGAACATATCTCACTAGTTAGGAT GAAGGTTCCATGGCCTCTATCTACAAGGGAAGCTATAGTGCGTTATTATC TTTTTGAGTACTTTCAAGATGACTTAGTAGTTGTTCTTTTGAATACGGTC TCTGAGTCGACGAGCATTGACAATTTCAACATGAATGCAATTCCTGAGGC AAAGGATGTTGTGAGAATTGATTTGCTGGGAGGCTATGCAATGCAAAAGG TGTCATCAGAAAGAAGTTATTTTCGGATAATAGGAAATTTGGATATAAAG CTGGATTTTGTACCTCCATCCCTCATAAATTTCATTTCAAGGCAGCTCAT CGGCAGTGGTTTCAGACTTTATCAGAAGGCTGTGGCTTCGATGATGAGCA ATGATAAAGATAAAGACATCAGCAAGGCCTTGGAGGACCCATTGTATGTT AGAATACGCGAAGCTTTAGTAACTGGGGAAGAGCTTAAGCAAGATGCAAG GTTTGTTCAAGCTGAGGAACTTATTCAAAGTGAGAAAAATGGGGTAAAAG AGAAAGATATATCCTGTGAGTATATAAGCAACCAACGTGCAGGTGGTGAA GAAGATGTAGAAGCAGGTTGTAAAGAGATTGTACAAGTTGAGGAAGATGT TAACAAGGTACTTGAAGTTCCAATCGAGGAAGGTGATTCATTGAGTGTGC TGATCAATGGCAAGGAGAATGGTGAGATTGAAGGTGCAGATAGTGAAGAG ATTGTTGATATTGAAGGTGCAGATAGTGAAGAGATTGTTGAGATTGAGAA GGAAATGAACAAAGTGGGTGGCATTCCAACTGAGAAAGATGGTGCAAGAA GTGTTCTGAAGGATAAGAGGAATGGTTATGTACGCTCAGATGTGAGAAGG GCTCTAGAAACAATAGAGAGGGTTATTTCAACGGTTAAGGAACATGGATT TCATCCCCGAATGCCTACTTCAAACTCTGATGAGCAAAAGTTCCAGATGG AAAAAGTTGGCACAGTTGACTCAAGTTCTGCGAAACCTATTCAAGTATGT TTGAAGGATGATGATAGTGTCAAAGAATCAAGCAGCAATATACGGGAGGA AACTTCAGAAGAACCTGCGACGATACAAAGCTTCAGGTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR023393 | START-like_dom_sf |
|