Vigun01g185000.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g185000.1 vs. DB:Swiss
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 2.662e-103 Identity = 138/164 (84.15%), Postives = 153/164 (93.29%), Query Frame = 1 Query: 1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 492 MPAGHG+R+RTRD F+RPFRKKG I L+TYLRT+ +GDYVD+KVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVEVNKQ+GNRIIRKRIHVRVEHV SRC EEF+LRK +ND LKADAKA+GE ISTKRQP+GPKPGFMVEG TLETVTPIPYDVVNDLKGGY Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
BLAST of Vigun01g185000.1 vs. DB:Swiss
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2) HSP 1 Score: 295.434 bits (755), Expect = 5.552e-103 Identity = 138/164 (84.15%), Postives = 152/164 (92.68%), Query Frame = 1 Query: 1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 492 MPAGHG+R+RTRD F+RPFRKKG I L+TYLRT+ +GDYVD+KVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVEVNKQ+GNRIIRKRIHVRVEHV SRC EEF+LRK KND+LKA AKA GE ISTKRQP+GPKPGFMVEG TLETVTPIPYDVVNDLKGGY Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
BLAST of Vigun01g185000.1 vs. DB:Swiss
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.873e-52 Identity = 80/157 (50.96%), Postives = 108/157 (68.79%), Query Frame = 1 Query: 1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMV--EGATLETVTPIPYD 465 M HG RSRTR F R FRK G + L+TYL+ Y +GD VDIK NG++ KGMPHKFY G+TG V+NVTK ++GV +NK VGNR + KR+++RVEH+ S+C +EF R N +A+AKA+G + KRQP P+ +V EG +T+ P+PY+ Sbjct: 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157
BLAST of Vigun01g185000.1 vs. DB:Swiss
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 3.130e-52 Identity = 85/159 (53.46%), Postives = 104/159 (65.41%), Query Frame = 1 Query: 1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMVEGATLE--TVTPIPYDVV 471 MP GLR+RTR FSR FR G + TT+LRT+ +GDYVDIK G VHKGMPHKFYHGRTGRVWNVT RA+GV +NK+VG RII K+IHVR EHV PS R +N + +AK G+ + +R P PK GF V E V P+ Y+++ Sbjct: 1 MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159
BLAST of Vigun01g185000.1 vs. DB:Swiss
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21B PE=1 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 4.898e-52 Identity = 79/157 (50.32%), Postives = 108/157 (68.79%), Query Frame = 1 Query: 1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMV--EGATLETVTPIPYD 465 M HG RSRTR F R FRK G + ++TYL+ Y +GD VDIK NG++ KGMPHKFY G+TG V+NVTK ++GV +NK VGNR + KR+++RVEH+ S+C +EF R N +A+AKA+G + KRQP P+ +V EG +T+ P+PY+ Sbjct: 1 MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157
BLAST of Vigun01g185000.1 vs. DB:Swiss
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 7.750e-51 Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 1 Query: 1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAK-AKGEKISTKRQPEGPKPGFMV--EGATLETVTPIPYD 465 MP +G R+RTR F+R F+ G + L+TYL + IG+YVD+ N AVHKGMP K+YHGRTG VWNVTKRAIGVE+NK+V +RII+KRIHVR++HV S C + F R +ND++K DA AK STKR P PK G ++ +G ET IPY+ Sbjct: 1 MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGRTGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAHVAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158
BLAST of Vigun01g185000.1 vs. DB:Swiss
Match: RL21B_SCHPO (60S ribosomal protein L21-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl2102 PE=2 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 1.723e-50 Identity = 79/157 (50.32%), Postives = 109/157 (69.43%), Query Frame = 1 Query: 1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMVEGATLETVT--PIPYD 465 MP +G+R+RTR +F R FR+ G I L+TYL+TY +GD VDIKVNGAV KGMPHK+YHG+TG V+NVT+ ++GV + K VGNR + KR++VR+EHV S+C ++F R N+ + +AKA+G+ + +RQP P V E VT P+ YD Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
BLAST of Vigun01g185000.1 vs. DB:Swiss
Match: RL21A_SCHPO (60S ribosomal protein L21-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl2101 PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.120e-50 Identity = 79/157 (50.32%), Postives = 109/157 (69.43%), Query Frame = 1 Query: 1 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMVEGATLETVT--PIPYD 465 MP +G+R+RTR +F R FR+ G I L+TYL+TY +GD VDIKVNGAV KGMPHK+YHG+TG V+NVT+ ++GV + K VGNR + KR++VR+EHV S+C ++F R N+ + +AKA+G+ + +RQP P V E VT P+ YD Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
BLAST of Vigun01g185000.1 vs. DB:Swiss
Match: RL21_PIG (60S ribosomal protein L21 OS=Sus scrofa OX=9823 GN=RPL21 PE=1 SV=3) HSP 1 Score: 149.828 bits (377), Expect = 1.297e-45 Identity = 79/154 (51.30%), Postives = 100/154 (64.94%), Query Frame = 1 Query: 16 GLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMV--EGATLETVTPIPYDVV 471 G R TR FSRPFRK G + L TY+R Y GD VDIK G V KGMPHK YHG+TGRV+NVT+ A+G+ VNKQV +I+ KRI+VR+EH+ S+ + F R +NDQ K +AK KG + KRQP P+ V G E + PIPY+ + Sbjct: 6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFM 159
BLAST of Vigun01g185000.1 vs. DB:Swiss
Match: RL21_HUMAN (60S ribosomal protein L21 OS=Homo sapiens OX=9606 GN=RPL21 PE=1 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 1.297e-45 Identity = 79/154 (51.30%), Postives = 100/154 (64.94%), Query Frame = 1 Query: 16 GLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKADAKAKGEKISTKRQPEGPKPGFMV--EGATLETVTPIPYDVV 471 G R TR FSRPFRK G + L TY+R Y GD VDIK G V KGMPHK YHG+TGRV+NVT+ A+G+ VNKQV +I+ KRI+VR+EH+ S+ + F R +NDQ K +AK KG + KRQP P+ V G E + PIPY+ + Sbjct: 6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFM 159 The following BLAST results are available for this feature:
BLAST of Vigun01g185000.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g185000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g185000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g185000.1; organism=Vigna unguiculata; type=mRNA; length=850bpback to top protein sequence of Vigun01g185000.1_Vu_IT97K-499-35_v1.1 >Vigun01g185000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g185000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g185000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=165bpback to top mRNA from alignment at Vu01:36532119..36533351- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g185000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g185000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g185000.1; organism=Vigna unguiculata; type=mRNA; length=1233bp; location=Sequence derived from: Vu01:36532119..36533351- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:36532119..36533351- >Vigun01g185000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g185000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g185000.1; organism=Vigna unguiculata; type=CDS; length=495bp; location=Sequence derived from: Vu01:36532119..36533351- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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