Vigun01g196500.1

Transcript Overview
NameVigun01g196500.1
Unique NameVigun01g196500.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1072
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:37340594..37341665 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR025Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL193Pisum sativum Cameor genome v1aPisum sativum
psvuL196Pisum sativum Cameor genome v1aPisum sativum
crvuL220Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuL529Pisum sativum Cameor genome v1aPisum sativum
pvvuL000Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL322Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL577Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL164Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0226Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL258Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0354Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuL0482Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL0645Cajanus cajan Asha genome v1.0Cajanus cajan
asvuL338Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL410Vigna angularis Jingnong 6 genome v1.1Vigna angularis
tifvuL002Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL002Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL352Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL330Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL581Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL538Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vssvuL018Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuL238Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL576Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL437Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL753Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR000Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR029Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL143Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL220Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL268Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL342Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL159Cicer arietinum
carvuL244Cicer arietinum
ccavuL183Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL263Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR017Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR036Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR001Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR007Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR037Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR049Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL307Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL547Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL329Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL551Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL000Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL499Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR016Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
jg31360.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan03g279400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_00999Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004494361.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigan.04G389500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_08170.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_07134.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Va03G080490.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat3g020520.1Pisum sativum Cameor genome v1aPisum sativum
rna-KK1_030761Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.5g131400.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vum_04G02744.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cr_05574.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigst.04G244100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
XM_058884464.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
PvulFLAVERTChr01.1001428Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.001G212300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_014640106.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.5g165920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun01g196500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g196500Vigun01g196500_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g196500.1Vigun01g196500.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun01g196500.1_Vu_IT97K-499-35_v1.1Vigun01g196500.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g196500.1.v1.1.five_prime_UTR.1Vigun01g196500.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g196500.1.v1.1.CDS.1Vigun01g196500.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g196500.1.v1.1.three_prime_UTR.1Vigun01g196500.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun01g196500.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 1..163
e-value: 2.9E-19
score: 70.2

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g196500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g196500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g196500.1; organism=Vigna unguiculata; type=mRNA; length=1072bp
CTTTCACTGAAACGCAAGTCCACAGAATTCTAAACATTCCCCCTTACCTA
AACCCTATATATACTTCACTCTCATCTTCCACCGCACAAAATCAACCCTC
TTCTTTCTATTCTATGGGGAACGCCACTTCTTCTTCTTGTATCTCTAACG
GTGTAAGTATTGGGAAAATTTTGAAGAAGAGAACAAAACCTACCAAAACA
GCTATTCTGTTGGAGAGTGGTGGGAACACGCGCGAGATCAAGCTACCGGT
GAAATCGGGGGAGCTGATGATAGAAGAATTCGGCCACGTCGTCACTCCGT
TGGACGAACTCCGTAGAACGGGACGGGTTTCTGCTTTGTTGCCCGAAGAG
GACCTTGTACCGGGGAAGGTTTACCTGCTGTTGCCGGTTAGTAGGGTCCA
TTCCAAGGCTTCAAAATTTGAGATGGCCATTGCAGAGGCACAGAGTAAGA
GGACAAGGGGAATCAACATGGCCAAGGTTTCACCCTCACTCGTTTCGAGT
TCAAGTGAAAGAGATGCGGAAAACGAGGTTACCGTTTTCCCTGTGTGTCC
GAGGTTGGGGAATCAATTACGATGGAATCCCGTTTTGGATACCATCTTCG
AATAATTCGCCCTCTGATCTCAACCGATTTGCCCAACAATTTTCTTAAAA
TTTTGTCTTTCACACACATTTGTGTTCGGTGTATTGTTTTTCCAATTTTT
TTTGTTAAACTTTACACTGACCTGGGTAGTTTGTACCACTGGATCAACGC
CGAAGGATGTTCAAGTCCACACTTAAAACGTGGAGCAATGCTGATGATAC
ATTTTGTTTAAATTAATTAAAATTTGTAACTATGGGATTTCATCTACAAA
TAGTGTTACCAAAACTGCTCTTGCAAAAAGAAAATTCTCCAGTTAGTTAT
ATACTGGAGCGGAATACTAGTATTGGGTTAGAGTGTAGAAATCCAGTCCG
GAAATCACTTTAGCGGCCCAGAGTTTTAAAGGCTAACAGCCCATATAAAT
CTAAGCCCTGTTCCAACCATGAAAGGTTGAAGGTTTTTTCTTCGTTTTAG
TTTTTGTAAATTTTTGTAAAGG
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protein sequence of Vigun01g196500.1_Vu_IT97K-499-35_v1.1

>Vigun01g196500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g196500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g196500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=164bp
MGNATSSSCISNGVSIGKILKKRTKPTKTAILLESGGNTREIKLPVKSGE
LMIEEFGHVVTPLDELRRTGRVSALLPEEDLVPGKVYLLLPVSRVHSKAS
KFEMAIAEAQSKRTRGINMAKVSPSLVSSSSERDAENEVTVFPVCPRLGN
QLRWNPVLDTIFE*
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mRNA from alignment at Vu01:37340594..37341665-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g196500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g196500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g196500.1; organism=Vigna unguiculata; type=mRNA; length=1072bp; location=Sequence derived from: Vu01:37340594..37341665- (Vigna unguiculata
CTTTCACTGAAACGCAAGTCCACAGAATTCTAAACATTCCCCCTTACCTA
AACCCTATATATACTTCACTCTCATCTTCCACCGCACAAAATCAACCCTC
TTCTTTCTATTCTATGGGGAACGCCACTTCTTCTTCTTGTATCTCTAACG
GTGTAAGTATTGGGAAAATTTTGAAGAAGAGAACAAAACCTACCAAAACA
GCTATTCTGTTGGAGAGTGGTGGGAACACGCGCGAGATCAAGCTACCGGT
GAAATCGGGGGAGCTGATGATAGAAGAATTCGGCCACGTCGTCACTCCGT
TGGACGAACTCCGTAGAACGGGACGGGTTTCTGCTTTGTTGCCCGAAGAG
GACCTTGTACCGGGGAAGGTTTACCTGCTGTTGCCGGTTAGTAGGGTCCA
TTCCAAGGCTTCAAAATTTGAGATGGCCATTGCAGAGGCACAGAGTAAGA
GGACAAGGGGAATCAACATGGCCAAGGTTTCACCCTCACTCGTTTCGAGT
TCAAGTGAAAGAGATGCGGAAAACGAGGTTACCGTTTTCCCTGTGTGTCC
GAGGTTGGGGAATCAATTACGATGGAATCCCGTTTTGGATACCATCTTCG
AATAATTCGCCCTCTGATCTCAACCGATTTGCCCAACAATTTTCTTAAAA
TTTTGTCTTTCACACACATTTGTGTTCGGTGTATTGTTTTTCCAATTTTT
TTTGTTAAACTTTACACTGACCTGGGTAGTTTGTACCACTGGATCAACGC
CGAAGGATGTTCAAGTCCACACTTAAAACGTGGAGCAATGCTGATGATAC
ATTTTGTTTAAATTAATTAAAATTTGTAACTATGGGATTTCATCTACAAA
TAGTGTTACCAAAACTGCTCTTGCAAAAAGAAAATTCTCCAGTTAGTTAT
ATACTGGAGCGGAATACTAGTATTGGGTTAGAGTGTAGAAATCCAGTCCG
GAAATCACTTTAGCGGCCCAGAGTTTTAAAGGCTAACAGCCCATATAAAT
CTAAGCCCTGTTCCAACCATGAAAGGTTGAAGGTTTTTTCTTCGTTTTAG
TTTTTGTAAATTTTTGTAAAGG
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Coding sequence (CDS) from alignment at Vu01:37340594..37341665-

>Vigun01g196500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g196500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g196500.1; organism=Vigna unguiculata; type=CDS; length=492bp; location=Sequence derived from: Vu01:37340594..37341665- (Vigna unguiculata
ATGGGGAACGCCACTTCTTCTTCTTGTATCTCTAACGGTGTAAGTATTGG
GAAAATTTTGAAGAAGAGAACAAAACCTACCAAAACAGCTATTCTGTTGG
AGAGTGGTGGGAACACGCGCGAGATCAAGCTACCGGTGAAATCGGGGGAG
CTGATGATAGAAGAATTCGGCCACGTCGTCACTCCGTTGGACGAACTCCG
TAGAACGGGACGGGTTTCTGCTTTGTTGCCCGAAGAGGACCTTGTACCGG
GGAAGGTTTACCTGCTGTTGCCGGTTAGTAGGGTCCATTCCAAGGCTTCA
AAATTTGAGATGGCCATTGCAGAGGCACAGAGTAAGAGGACAAGGGGAAT
CAACATGGCCAAGGTTTCACCCTCACTCGTTTCGAGTTCAAGTGAAAGAG
ATGCGGAAAACGAGGTTACCGTTTTCCCTGTGTGTCCGAGGTTGGGGAAT
CAATTACGATGGAATCCCGTTTTGGATACCATCTTCGAATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR025322PADRE_dom