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Transcript Overview
Name | Vigun03g320700.1 |
Unique Name | Vigun03g320700.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 1612 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun03g320700.1 | Vigun03g320700.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun03g320700.1_Vu_IT97K-499-35_v1.1 | Vigun03g320700.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun03g320700.1.v1.1.five_prime_UTR.1 | Vigun03g320700.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun03g320700.1.v1.1.CDS.1 | Vigun03g320700.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun03g320700.1.v1.1.CDS.2 | Vigun03g320700.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun03g320700.1.v1.1.CDS.3 | Vigun03g320700.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun03g320700.1.v1.1.CDS.4 | Vigun03g320700.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun03g320700.1.v1.1.CDS.5 | Vigun03g320700.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun03g320700.1.v1.1.three_prime_UTR.1 | Vigun03g320700.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
BLAST of Vigun03g320700.1 vs. DB:Swiss
Match: PUB36_ARATH (U-box domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=PUB36 PE=2 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 1.892e-10 Identity = 52/186 (27.96%), Postives = 87/186 (46.77%), Query Frame = 1
Query: 367 DDLYVAVGKDDLDA---VKWALDHAVSPGSRIFLIHVSSPITSIPTPVGRFERSKLTPQQVRLYVNEVNNKRKDLLQKYIKMSNEANVIAETLLLESNDTGKAILDLISILNITNLVIGI---KKLPYTRRNNKLSIGEFVKKHAPNTCEVTLVYNGEVFVSDPYMDGLVSYGQASQSKNHSKSNF 906
+ +YVAV + DL++ + WA+ + S G ++HV PI P F KL RLY E + K+ +KY+++ + V AE + +E++ K IL LIS +T LV+G + R+ K ++ + AP TC + NG + S Y + + S + S+S+
Sbjct: 34 EKIYVAVTEKDLESKSSLVWAIQN--SGGKEFCIVHVHQPI-----PGEMFHEQKL-----RLYRKEKDKAHKNS-EKYLQICRQMQVTAEIIYIETDSVEKGILQLISQRGVTKLVMGAAADRHYSMRMRDLKSKKAIYIHREAPATCLIWFTCNGYLICSREARRANNLYLECASSNSLSQSDI 206
BLAST of Vigun03g320700.1 vs. DB:Swiss
Match: PUB54_ARATH (U-box domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN=PUB54 PE=2 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 4.182e-10 Identity = 50/162 (30.86%), Postives = 86/162 (53.09%), Query Frame = 1
Query: 367 DDLYVAVGKDDLDAVK---WALDHAVSPGSRIFLIHVSSPITSIPTPVGRFERSKLTPQQ---VRLYVNEVNNKRKDLLQKYIKMSNEANVIAETLLLESNDTGKAILDLISILNITNLVIGIKKLPYTRRNNKLSI--GEFVKKHAPNTCEVTLVYNGEVF 828
D +YVAV +D ++ K WAL + +IFL+HV P S+ T R E+S++ Q + VN + R + K + NE +V +T ++ +D G+ I++LI ITNLV+G P+ R ++ E+V +HAP++C++ + G++
Sbjct: 3 DAIYVAVNQDVRESKKTLLWALKNLQV--KKIFLLHVHLPF-SLTTSSSRLEQSEIDAIQDSELNTSVNSLYKYRDICINKGV---NEKDV--DTSMISGHDVGEGIVELIYQNIITNLVMGAAADPHYSRGMSITSRKAEYVSQHAPHSCKIWFICKGKLI 156
BLAST of Vigun03g320700.1 vs. DB:Swiss
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2) HSP 1 Score: 59.6918 bits (143), Expect = 1.587e-8 Identity = 42/146 (28.77%), Postives = 73/146 (50.00%), Query Frame = 1
Query: 409 VKWALDHAVSPGSRIF-LIHVSSPITSIPTPVGR-FERSKLTPQQVRLYVNEVNNKRKDLLQKYIKMSNEANVIAETLLLESNDTGKAILDLISILNITNLVIGIKKLPYTRRNNKLSIGEFVKKHAPNTCEVTLVYNGEVFVSDP 840
V WA++ + G+ F L+H+ ITS+PTP+G S++ V Y E+ + +++L+ Y K+ V E L++ES++ AI + ++ +I +VIG + R K I + PN C V +V G++ P
Sbjct: 36 VTWAIEKFATEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDDVVTAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDSIDRIVIGGSSRSFFSR--KADICSVISALMPNFCTVYVVSKGKLSCVRP 179
BLAST of Vigun03g320700.1 vs. DB:Swiss
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 7.088e-7 Identity = 44/146 (30.14%), Postives = 71/146 (48.63%), Query Frame = 1
Query: 409 VKWALDHAVSPGSRIF-LIHVSSPITSIPTPVG-RFERSKLTPQQVRLYVNEVNNKRKDLLQKYIKMSNEANVIAETLLLESNDTGKAILDLISILNITNLVIGIKKLPYTRRNNKLSIGEFVKKHAPNTCEVTLVYNGEVFVSDP 840
V WAL+ + G F L++V P++ IPTP+G S+L V Y E++ ++L+ Y KM V E LLL+S + AI + I+ +T LVIG+ + R K+ + + P C V ++ G++ P
Sbjct: 38 VFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVAVSELREDVVSAYKQELDWSANEMLRPYKKMFERRKVQVEVLLLDSLEPAAAIAEEIAGTGVTKLVIGMSLRGFFSR--KIDMSSLIATAVPRFCTVYVISKGKLASVRP 181
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 184..204 |
None | No IPR available | CDD | cd01989 | STK_N | coord: 126..273 e-value: 1.23814E-30 score: 110.829 |
None | No IPR available | SUPERFAMILY | 52402 | Adenine nucleotide alpha hydrolases-like | coord: 132..270 |
IPR006016 | UspA | PFAM | PF00582 | Usp | coord: 134..256 e-value: 2.9E-5 score: 24.6 |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | GENE3D | 3.40.50.620 | | coord: 120..274 e-value: 5.6E-8 score: 35.2 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun03g320700.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g320700.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g320700.1; organism=Vigna unguiculata; type=mRNA; length=1612bp ATAGCCAAAACACACTAAAAAATGAAAAAGGGGTCATCATAGTATGACAT GTCCAATGAACGGCTGATATTGACAAAAGAGTTTTCTCTAAAAATGTATA CTTAAGTTGACAGAAGAGAAACTCCTTTTTCACCTAGGTTGAGGCTTCGA TAGCAACGAAGGCTTCATGAAATGCCAATTTAGAATCAACCAATAATTCC TTTCGTTTCCTATCCTCATTTTGTAATGTGAGAAAAGTTGAGACAAAGAG GCAGAGAGAGATATGGAAGATGTGAATCACACCCCAAGAGAAGCAAAGGA TTACTATTCTAGACCAATATGGTTGCTAGAAACTGCGCAAGCATTTGGAG ATCTCAAGAGAAGTGACAGAAATGGAGTTAATGGCTTCCATTTTACTGCT GGTAGAGATTCCTTCGTCTATAACTCCCAAGAAATAATGACTCCTGAAAT TTCTGGAGCATTCGAAGAAATCAAAAGTTTATTTAGTAGCAGAAATGGCG TTAATGATGAGGTTGTTGACCAAGAAAACGGTGACTATGGCCGCTATTCT TTACAAACGTTGTCAACAGAAATTGTGGAAATAGTTGAGGATGGCAACAG CATAACAAAAAACAAAGATAGAAGGGTTGATGATCTTTATGTTGCTGTTG GCAAAGATGACTTGGATGCAGTGAAATGGGCTCTTGATCATGCTGTTTCT CCCGGTTCCCGGATTTTTCTTATCCACGTCTCTTCTCCGATCACATCGAT TCCTACTCCAGTTGGAAGGTTTGAAAGAAGTAAACTGACCCCACAGCAAG TGAGACTATACGTGAATGAAGTGAACAACAAGAGGAAGGATCTTTTGCAG AAGTACATTAAGATGAGTAATGAAGCCAATGTAATAGCAGAAACGTTGCT TCTGGAGAGCAATGACACGGGAAAAGCAATTCTGGATCTCATCTCCATAC TTAACATAACCAACCTTGTCATTGGAATCAAAAAGCTACCTTACACACGG CGCAACAACAAATTGAGCATTGGAGAGTTCGTAAAGAAACATGCACCGAA TACCTGTGAAGTTACTTTGGTTTATAACGGCGAGGTGTTTGTGTCTGACC CTTACATGGATGGCTTGGTATCCTATGGCCAAGCATCACAGAGTAAAAAT CATTCTAAAAGCAACTTCTTACAGTGCATGTGCTTTTCAGGGTGCATGAA AGAAGATGATGGTAGATAGTACATTTCTCACACCAGGAAAAGCAAGCACT GGGTCAACTACTCAGGTAGTCTTAATTTTCCAGCGTGTTGACTAATGAAA ATTACATCTTTCAATCACGAGGAACTAAATCGGACCACCAACCATGGGCC TAAAGTAGTTGTGTGATCTACACAGAAAACTCATGTGCATCATACTATTA ATTTTTGGGAAGAAAACTTTTGTGGATTTGTCTGCCAAATAGATGAGGGA ATTACTGCCTTCAATATGAGTGACACAGTTAATGTTCTCTTATTAAACAG CTttttaatttaaattacaatataaagttacttttatatGAACTCCGTAG TGTGTAATTAGTATTTTTTTTTATTATTAAAAAAATATCATCTCTATTGC AGCATGAGTTCT back to topprotein sequence of Vigun03g320700.1_Vu_IT97K-499-35_v1.1 >Vigun03g320700.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g320700.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g320700.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=319bp MEDVNHTPREAKDYYSRPIWLLETAQAFGDLKRSDRNGVNGFHFTAGRDS FVYNSQEIMTPEISGAFEEIKSLFSSRNGVNDEVVDQENGDYGRYSLQTL STEIVEIVEDGNSITKNKDRRVDDLYVAVGKDDLDAVKWALDHAVSPGSR IFLIHVSSPITSIPTPVGRFERSKLTPQQVRLYVNEVNNKRKDLLQKYIK MSNEANVIAETLLLESNDTGKAILDLISILNITNLVIGIKKLPYTRRNNK LSIGEFVKKHAPNTCEVTLVYNGEVFVSDPYMDGLVSYGQASQSKNHSKS NFLQCMCFSGCMKEDDGR* back to topmRNA from alignment at Vu03:51541065..51543431+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun03g320700.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g320700.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g320700.1; organism=Vigna unguiculata; type=mRNA; length=2367bp; location=Sequence derived from: Vu03:51541065..51543431+ (Vigna unguiculata ATAGCCAAAACACACTAAAAAATGAAAAAGGGGTCATCATAGTATGACAT
GTCCAATGAACGGCTGATATTGACAAAAGAGTTTTCTCTAAAAATGTATA
CTTAAGTTGACAGAAGAGAAACTCCTTTTTCACCTAGGTTGAGGCTTCGA
TAGCAACGAAGGCTTCATGAAATGCCAATTTAGAATCAACCAATAATTCC
TTTCGTTTCCTATCCTCATTTTGTAATGTGAGAAAAGTTGAGACAAAGAG
GCAGAGAGAGATATGGAAGATGTGAATCACACCCCAAGAGAAGCAAAGGA
TTACTATTCTAGACCAATATGGTTGCTAGAAACTGCGCAAGCATTTGGAG
ATCTCAAGAGAAGTGACAGAAATGGAGTTAATGGCTTCCATTTTACTGCT
GGTAGAGATTCCTTCGTCTATAACTCCCAAGAAATAATGACTCCTGAAAT
TTCTGGAGCATTCGAAGAAATCAAAAGTTTATTTAGTAGCAGAAATGGCG
TTAATGATGAGGTTGTTGACCAAGAAAACGGTGACTATGGCCGCTATTCT
TTACAAACGTTGTCAACAGAAATTGTGGAAATAGTTGAGGATGGCAACAG
CATAACAAAAAACAAAGATAGAAGGGTTGATGATCTTTATGTTGCTGTTG
GCAAAGATGACTTGGATGCAGTGAAATGGGCTCTTGATCATGCTGTTTCT
CCCGGTTCCCGGATTTTTCTTATCCACGTCTCTTCTCCGATCACATCGAT
TCCTACTCCAGGTAACCATTAATCTTTTTCATTTTTCATTCTCATTTCTA
TAAGAACGCTTTTCCATTTGAGTTCAGAAGATTAGTTCTTTGTCACACAA
CAGATTTTGCAGGGAACCTTTCCTTTGGAATATATGTTCTAGCGAGACCT
GCTATTACGAGTCATTCTTTAGTATTCTGCTCTAGTATATACTGTAGCAT
GAATGTTTCAAAGTTGTGCATTGTCTATGAAGAATACATCTCAAACTCTG
AATTTCAAACCTTAAATTATATCTGCTTGGTGGTGATAACTTATCTGATA
GTTGGAAGGTTTGAAAGAAGTAAACTGACCCCACAGCAAGTGAGACTATA
CGTGAATGAAGTGAACAACAAGAGGAAGGATCTTTTGCAGAAGTACATTA
AGATGAGTAATGAAGCCAATGTACTGTATCTCTACAATTTATTTAGACCA
CAAAAACATACTAAATTATTCTAATTCTAGTTTTGTTACCAATTCCTGTT
TGTCTCCGTGTTCTTTCCGCTCCCAGGTAATAGCAGAAACGTTGCTTCTG
GAGAGCAATGACACGGGAAAAGCAATTCTGGATCTCATCTCCATACTTAA
CATAACCAACCTTGTCATTGGAATCAAAAAGCTACCTTACACACGGTATG
CTATCACTGCTTCGATTTCATTCACAAATGGATGACATCGACAAGCACGT
GTTAAAGATTAAGGATTGTGTATCTTCTTTCTCTAATTTGTTCTTTTGAT
CAGGCGCAACAACAAATTGAGCATTGGAGAGTTCGTAAAGAAACATGCAC
CGAATACCTGTGAAGTTACTTTGGTTTATAACGGCGAGGTGTTTGTGTCT
GACCCTTACATGGATGGCTTGGTATCCTATGGCCAAGCATCACAGAGTAA
AAATCATTCTAAAAGCAACTTCTTACAGTGCATGTGCTTTTCAGGCAAGT
TCAGTTCAGTCAACTATATTGATTTTCTCTCTCAACTCTTGCTATAAAAA
TATGTACAATGAATTAGACTGTGGAGCTAAATAGGTACATTTGCTATGAG
GGGAAGCTGTAGATTTCAGCAATGCATGATATATGTTTGAAAAAGTAATT
TAATTATGTATGCTATTATTATGCTATATATATTTTATTTTGTTGCATGT
TTCCTTTCACAGTCTCACACTCTATCTATAATCCCTTGCTTACAGGGTGC
ATGAAAGAAGATGATGGTAGATAGTACATTTCTCACACCAGGAAAAGCAA
GCACTGGGTCAACTACTCAGGTAGTCTTAATTTTCCAGCGTGTTGACTAA
TGAAAATTACATCTTTCAATCACGAGGAACTAAATCGGACCACCAACCAT
GGGCCTAAAGTAGTTGTGTGATCTACACAGAAAACTCATGTGCATCATAC
TATTAATTTTTGGGAAGAAAACTTTTGTGGATTTGTCTGCCAAATAGATG
AGGGAATTACTGCCTTCAATATGAGTGACACAGTTAATGTTCTCTTATTA
AACAGCTTTTTAATTTAAATTACAATATAAAGTTACTTTTATATGAACTC
CGTAGTGTGTAATTAGTATTTTTTTTTATTATTAAAAAAATATCATCTCT
ATTGCAGCATGAGTTCT back to topCoding sequence (CDS) from alignment at Vu03:51541065..51543431+ >Vigun03g320700.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g320700.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g320700.1; organism=Vigna unguiculata; type=CDS; length=957bp; location=Sequence derived from: Vu03:51541065..51543431+ (Vigna unguiculata ATGGAAGATGTGAATCACACCCCAAGAGAAGCAAAGGATTACTATTCTAG ACCAATATGGTTGCTAGAAACTGCGCAAGCATTTGGAGATCTCAAGAGAA GTGACAGAAATGGAGTTAATGGCTTCCATTTTACTGCTGGTAGAGATTCC TTCGTCTATAACTCCCAAGAAATAATGACTCCTGAAATTTCTGGAGCATT CGAAGAAATCAAAAGTTTATTTAGTAGCAGAAATGGCGTTAATGATGAGG TTGTTGACCAAGAAAACGGTGACTATGGCCGCTATTCTTTACAAACGTTG TCAACAGAAATTGTGGAAATAGTTGAGGATGGCAACAGCATAACAAAAAA CAAAGATAGAAGGGTTGATGATCTTTATGTTGCTGTTGGCAAAGATGACT TGGATGCAGTGAAATGGGCTCTTGATCATGCTGTTTCTCCCGGTTCCCGG ATTTTTCTTATCCACGTCTCTTCTCCGATCACATCGATTCCTACTCCAGT TGGAAGGTTTGAAAGAAGTAAACTGACCCCACAGCAAGTGAGACTATACG TGAATGAAGTGAACAACAAGAGGAAGGATCTTTTGCAGAAGTACATTAAG ATGAGTAATGAAGCCAATGTAATAGCAGAAACGTTGCTTCTGGAGAGCAA TGACACGGGAAAAGCAATTCTGGATCTCATCTCCATACTTAACATAACCA ACCTTGTCATTGGAATCAAAAAGCTACCTTACACACGGCGCAACAACAAA TTGAGCATTGGAGAGTTCGTAAAGAAACATGCACCGAATACCTGTGAAGT TACTTTGGTTTATAACGGCGAGGTGTTTGTGTCTGACCCTTACATGGATG GCTTGGTATCCTATGGCCAAGCATCACAGAGTAAAAATCATTCTAAAAGC AACTTCTTACAGTGCATGTGCTTTTCAGGGTGCATGAAAGAAGATGATGG TAGATAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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