Vigun03g321600.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun03g321600.1 vs. DB:Swiss
Match: TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 4.631e-86 Identity = 139/312 (44.55%), Postives = 204/312 (65.38%), Query Frame = 1 Query: 37 GPSGFGSNSTAEQVTQDFSSLLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHAQVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGKNYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCXXXXXXXXXXXXXXXKKLWNETYALLHKR 972 G SGF +STAEQVT + + LTA++TGA+SGIGAET RVLA RG V++G R++ A++V++ I K+ P A+V +E+DLSS SV++F SEF + PLNILINNAG+ + + S++ IE+ FATN++GHFLLT +LL+ M T ++S EGRI+NV+S H + F+ + +YN RAY QSKLA +LH + + LKE N+T N++HPG + T + R H + + I +LK++ QGA+TTCYVAL + +GVSG+YF+D N ++ + AKKLW+ + L+ ++ Sbjct: 9 GVSGFSGSSTAEQVTHGIDA---TGLTAIVTGASSGIGAETTRVLALRGAHVIMGVRNMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIMACPFKLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYPEGIRFDKINDQSSYNNWRAYGQSKLANVLHANQLTKHLKEDGVNITANSLHPGTIVTNLFR-HNSAVNGLINVIGKLVLKNVQQGAATTCYVALHPQVKGVSGEYFSDSNVYKTTPHGKDVDLAKKLWDFSINLVKQK 316
BLAST of Vigun03g321600.1 vs. DB:Swiss
Match: TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC32 PE=2 SV=1) HSP 1 Score: 260.381 bits (664), Expect = 3.239e-84 Identity = 138/309 (44.66%), Postives = 200/309 (64.72%), Query Frame = 1 Query: 19 YLAGIAGPSGFGSNSTAEQVTQDFSSLLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHAQVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGKNYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCXXXXXXXXXXXXXXXKKLWN 945 + G G SGF S STAE+VT + LTA++TGA+SGIG ETARVL+ RGV VV+ R+ +V+E I K+ P A++ ++E+DLSS SV++F SE+ + LPLN+LINNAG+ + S++ IE+ FATN+LGHFLLTK+LL+ M T+++S EGRI+N+SS H + F+ + +Y+ RAY QSKL +LH + +QLKE N+T N++HPG + T + R + ++ +A +LKS+ QGA+TTCYVAL+ + GVSG+YF D N + L + AKK+W+ Sbjct: 2 WFFGSKGASGFSSRSTAEEVTHGVDG---TGLTAIVTGASSGIGVETARVLSLRGVHVVMAVRNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLSKDNIELQFATNHLGHFLLTKLLLDTMKSTSRESKREGRIVNLSSEAHRFSYPEGVRFDKINDKSSYSSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGRYFNPYLAVAVGAVAKYILKSVPQGAATTCYVALNPQVAGVSGEYFQDSNIAKPLPLVKDTELAKKVWD 307
BLAST of Vigun03g321600.1 vs. DB:Swiss
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens OX=9606 GN=RDH14 PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 3.639e-50 Identity = 117/292 (40.07%), Postives = 169/292 (57.88%), Query Frame = 1 Query: 115 TALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHA-------------QVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGKNYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPGIVKTGIIRA-HKGLITDSLFFIAS-KLLKSISQGASTTCYVALSGKTEGVSGKYFTDCXXXXXXXXXXXXXXXKKLWN 945 T LITGA SG+G TA L + G RV++G RD +A E ++++E A ++I+ E+DL+S SV+ FC E L E L++LINNAG++ +E+ EM F N+LGHFLLT +LL KS RI+ VSS ++ K F+D+ ++YN + Y++SKLA IL + +AR+L+ NVT+N +HPGIV+T + R H L+ LF + S K+ +GA T+ Y+A S + EGVSG+YF DC E A +ES A+KLW+ Sbjct: 45 TVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGHFLLTNLLL-----GLLKSSAPSRIVVVSSKLY---KYGDINFDDLNSEQSYNKSFCYSRSKLANILFTRELARRLE--GTNVTVNVLHPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEGAQTSIYLASSPEVEGVSGRYFGDCKEEELLPKAMDESVARKLWD 326
BLAST of Vigun03g321600.1 vs. DB:Swiss
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus OX=10090 GN=Rdh14 PE=1 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 6.145e-50 Identity = 116/289 (40.14%), Postives = 167/289 (57.79%), Query Frame = 1 Query: 115 TALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHA----------QVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGKNYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPGIVKTGIIRA-HKGLITDSLFFIAS-KLLKSISQGASTTCYVALSGKTEGVSGKYFTDCXXXXXXXXXXXXXXXKKLWN 945 T LITGA SG+G TA L + G RV++G RD +A E ++++E A Q+++ E+DL+S SV+ FC E L E L++LINNAG++ +E+ EM F N+LGHFLLT +LL KS RI+ VSS ++ + F D+ ++YN + Y++SKLA IL + +AR+L+ NVT+N +HPGIV+T + R H L+ LF + S K+ +GA T+ Y+A S EGVSG+YF DC E A +ES A+KLW+ Sbjct: 46 TVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVNHLGHFLLTNLLL-----GLLKSSAPSRIVVVSSKLYKY---GEINFEDLNSEQSYNKSFCYSRSKLANILFTRELARRLE--GTNVTVNVLHPGIVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEGAQTSIYLACSPDVEGVSGRYFGDCKEEELLPKAMDESVARKLWD 324
BLAST of Vigun03g321600.1 vs. DB:Swiss
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus OX=9913 GN=RDH12 PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 4.522e-48 Identity = 114/281 (40.57%), Postives = 168/281 (59.79%), Query Frame = 1 Query: 121 LITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHAQVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGKNYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCXXXXXXXXXXXXXXXKKLWNETYALL 963 +ITGA +GIG ETAR LA+RG RV I RD+ K +IQ ++ ++QV++ ++DLS S++ F FLA E L+ILINNAG+ + + E A N+LGHFLLT +LL ++ ++A R++N+SSV H K F+D+ K YN AY SKLA +L + +A++LK VT AVHPGIV++ ++R H L+ L+ + S LK+ +GA T+ + AL+ E +SGKYF+DC ++ S A A++LWN + LL Sbjct: 43 VITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESA-----PARVVNLSSVAHHLGKIR---FHDLQGDKYYNLGFAYCHSKLANVLFTRELAKRLK--GTGVTTYAVHPGIVRSKLVR-HSFLLC-LLWRLFSPFLKTTWEGAQTSLHCALAEGLEPLSGKYFSDCKKTWVSPRARNNKTAERLWNVSCELL 311
BLAST of Vigun03g321600.1 vs. DB:Swiss
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus OX=10090 GN=Rdh12 PE=2 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.737e-46 Identity = 113/281 (40.21%), Postives = 164/281 (58.36%), Query Frame = 1 Query: 121 LITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHAQVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGKNYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCXXXXXXXXXXXXXXXKKLWNETYALL 963 +ITGA +GIG ETAR LA+RG RV I RD+ K +I+ ++ ++QV++ ++DLS S++ F FLA E L+ILINNAG+ + + E F N+LGHFLLT +LLE++ ++A R++N+SS+ H K F+D+ K Y AY SKLA +L + +A++L+ VT AVHPG+V + I R L L+ + S KS SQGA T+ + AL+ E +SGKYF+DC SS A + A++LWN + LL Sbjct: 43 VITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESA-----PARVVNLSSIAHLIGK---IRFHDLQGQKRYCSAFAYGHSKLANLLFTRELAKRLQ--GTGVTAYAVHPGVVLSEITRNSYLLCL--LWRLFSPFFKSTSQGAQTSLHCALAEDLEPLSGKYFSDCKRMWVSSRARNKKTAERLWNVSCELL 311
BLAST of Vigun03g321600.1 vs. DB:Swiss
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens OX=9606 GN=RDH12 PE=1 SV=3) HSP 1 Score: 160.999 bits (406), Expect = 1.057e-45 Identity = 109/288 (37.85%), Postives = 163/288 (56.60%), Query Frame = 1 Query: 100 LPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHAQVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGKNYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCXXXXXXXXXXXXXXXKKLWNETYALL 963 LP + +ITGA +GIG ETAR LA RG RV I RD+ K +I+ ++ ++QV++ ++DLS S++ F FLA E L+ILINNAG+ + + E N+LGHFLLT ++ K R++NVSSV H K F+D+ K Y+ AY SKLA +L + +A++L+ VT AVHPG+V++ ++R H L+ L+ + S +K+ +GA T+ + AL+ E +SGKYF+DC + S A A++LWN + LL Sbjct: 37 LPGKVV-VITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLT-----YLLLERLKVSAPARVVNVSSVAHHIGK---IPFHDLQSEKRYSRGFAYCHSKLANVLFTRELAKRLQ--GTGVTTYAVHPGVVRSELVR-HSSLLC-LLWRLFSPFVKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRTWVSPRARNNKTAERLWNVSCELL 311
BLAST of Vigun03g321600.1 vs. DB:Swiss
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens OX=9606 GN=RDH11 PE=1 SV=2) HSP 1 Score: 157.147 bits (396), Expect = 3.843e-44 Identity = 110/288 (38.19%), Postives = 174/288 (60.42%), Query Frame = 1 Query: 100 LPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHAQVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGKNYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCXXXXXXXXXXXXXXXKKLWNETYALL 963 LP + ++TGA +GIG ETA+ LA+RG RV + RD++K V ++IQ + + QV++ ++DLS S++ F FLA E L++LINNAG+ + + EM N+LGHFLLT +LLEK+ ++A RI+NVSS+ H F+++ K YN AY SKLA IL + +AR+LK + VT +VHPG V++ ++R H + ++++ S +K+ QGA T+ + AL+ E +SG +F+DC+ + S+ A E+ A++LW+ + LL Sbjct: 39 LPGKVV-VVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAPS-----RIVNVSSLAH---HLGRIHFHNLQGEKFYNAGLAYCHSKLANILFTQELARRLK--GSGVTTYSVHPGTVQSELVR-HSSFMR-WMWWLFSFFIKTPQQGAQTSLHCALTEGLEILSGNHFSDCHVAWVSAQARNETIARRLWDVSCDLL 313
BLAST of Vigun03g321600.1 vs. DB:Swiss
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus OX=10090 GN=Rdh11 PE=1 SV=2) HSP 1 Score: 147.902 bits (372), Expect = 1.205e-40 Identity = 107/289 (37.02%), Postives = 165/289 (57.09%), Query Frame = 1 Query: 100 LPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHAQVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGKNYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPGIVKTGIIRAHKGL-ITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCXXXXXXXXXXXXXXXKKLWNETYALL 963 LP + A++TGA +GIG ETA+ LA+RG RV + RD+ K +IQ + ++QV + ++DL+ S++ F +FLA E L++LINNAG+ + + EM N+LGHFLLT +LLEK+ ++A RI+N+SS+ H F+++ K Y+ AY SKLA IL K +A++LK + VT +VHPG V + + R + LFF+ +K+ +GA T+ Y AL+ E +SG +F+DC + S E A++LW+ + LL Sbjct: 36 LPGKV-AIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAPS-----RIVNLSSLGH---HLGRIHFHNLQGEKFYSAGLAYCHSKLANILFTKELAKRLK--GSGVTTYSVHPGTVHSELTRYSSIMRWLWQLFFV---FIKTPQEGAQTSLYCALTEGLESLSGSHFSDCQLAWVSYQGRNEIIARRLWDVSCDLL 310
BLAST of Vigun03g321600.1 vs. DB:Swiss
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens OX=9606 GN=WWOX PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 5.014e-39 Identity = 108/323 (33.44%), Postives = 166/323 (51.39%), Query Frame = 1 Query: 49 FGSNSTAEQVTQ--DFSSLLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKAREVREKIQKESPHAQVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKSGIEGRIINVSSVIHSWVKRSTFCFNDMLCGK-----------NYNGTRAYAQSKLATILHVKAVARQLKERNANVTINAVHPG-IVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGKTEGVSGKYFTDCXXXXXXXXXXXXXXXKKLWNETYALLHKRL 975 + ++TA ++ Q DF+ + ++TGA SGIG ETA+ A G V++ R++ +A E +I +E A+V + +DL+ SVQ F F A +PL++L+ NA ++ +++ +E TF N+LGHF L ++L + + +A R+I VSS H + ND L GK +Y AY +SKL IL + R+L R VT NAVHPG ++ + I R+ + LF +A KS+ QGA+TT Y A + EG+ G YF +C S A E A+ LW + L+ +RL Sbjct: 107 YDGSTTAMEILQGRDFTGKV-----VVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSAP-----ARVIVVSSESHRFTD-----INDSL-GKLDFSRLSPTKNDYWAMLAYNRSKLCNILFSNELHRRLSPR--GVTSNAVHPGNMMYSNIHRS--WWVYTLLFTLARPFTKSMQQGAATTVYCAAVPELEGLGGMYFNNCCRCMPSPEAQSEETARTLWALSERLIQERL 409 The following BLAST results are available for this feature:
BLAST of Vigun03g321600.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun03g321600.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g321600.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g321600.1; organism=Vigna unguiculata; type=mRNA; length=1466bpback to top protein sequence of Vigun03g321600.1_Vu_IT97K-499-35_v1.1 >Vigun03g321600.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g321600.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g321600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=331bpback to top mRNA from alignment at Vu03:51712864..51715568+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun03g321600.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g321600.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g321600.1; organism=Vigna unguiculata; type=mRNA; length=2705bp; location=Sequence derived from: Vu03:51712864..51715568+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu03:51712864..51715568+ >Vigun03g321600.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g321600.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g321600.1; organism=Vigna unguiculata; type=CDS; length=993bp; location=Sequence derived from: Vu03:51712864..51715568+ (Vigna unguiculataback to top |