Vigun03g440400.1

Transcript Overview
NameVigun03g440400.1
Unique NameVigun03g440400.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length375
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu03supercontigVu03:64317948..64318322 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR248Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuR256Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL013Pisum sativum Cameor genome v1aPisum sativum
psvuL303Pisum sativum Cameor genome v1aPisum sativum
psvuL308Pisum sativum Cameor genome v1aPisum sativum
pvvuL343Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL520Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuL0062Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL0131Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL0703Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0029Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0223Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0397Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0562Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0806Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL040Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL155Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR219Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR259Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL037Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL032Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL512Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL478Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL047Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL059Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuL500Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL329Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL338Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR161Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR179Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL029Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL561Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL084Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL200Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL030Cicer arietinum
carvuL106Cicer arietinum
carvuL564Cicer arietinum
ccavuL135Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL412Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL568Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR240Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR331Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR347Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR351Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR239Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR312Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL026Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL264Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL400Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL402Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL031Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL418Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vuvunR201Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR217Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.01G541300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat04G0009600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg48503.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat4g002280.1Pisum sativum Cameor genome v1aPisum sativum
Vigst.01G380600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_01G04108.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Va01G100110.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_31743Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_05G00762.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-KK1_017203Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr06.1601Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_28147.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigst.05G074000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
XM_058915931.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.model.Chr03.1105Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan01g325600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.05G092800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_19429.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Phvul.003G085100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_026066Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.4g184480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_004486491.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
LR48_mrnaVigan09g199000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_014661911.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.006G141500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va09G054300.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg39160.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.1g365200.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.4g240640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Hedin2.R1.1g445720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun06g153200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun03g440400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun06g153200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun03g440400Vigun03g440400_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun03g440400.1Vigun03g440400.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun03g440400.1_Vu_IT97K-499-35_v1.1Vigun03g440400.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun03g440400.1.v1.1.CDS.1Vigun03g440400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
The following BLAST results are available for this feature:
BLAST of Vigun03g440400.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun03g440400.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g440400.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g440400.1; organism=Vigna unguiculata; type=mRNA; length=375bp
ATGAGAAGGAAGATCCATGAACCCAGTGCAGTTCGCTCCTCCATTGTTCT
GCTACAAGAGAGATTCAGACAGTTGCAGAAAGTGAAAGAAATGAGGAAGA
AGAGAGAGTTGCTGAAAATGTTCACTGTAGAGCCTAAACACTTCAATTCC
AACCCCACCACGAGACAGTTTTTCCACCCTGAACTGATGAACCCGTCAGG
GTCACTTTCTCTATGGCCATCTTCACAGTGCATGGTAGAGTACAACAAAA
GCACTATTGAGAACCCAGTCTCCATGGATTCTACACATACACAGTCCCTT
CAGCCTTCATGTAAGAACCTCTATGATTGGGATTCGGGCTCTGACTCTGG
TGTTGATACCTCTCTTCACCTGTAA
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protein sequence of Vigun03g440400.1_Vu_IT97K-499-35_v1.1

>Vigun03g440400.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g440400.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g440400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=125bp
MRRKIHEPSAVRSSIVLLQERFRQLQKVKEMRKKRELLKMFTVEPKHFNS
NPTTRQFFHPELMNPSGSLSLWPSSQCMVEYNKSTIENPVSMDSTHTQSL
QPSCKNLYDWDSGSDSGVDTSLHL*
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mRNA from alignment at Vu03:64317948..64318322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun03g440400.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g440400.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g440400.1; organism=Vigna unguiculata; type=mRNA; length=375bp; location=Sequence derived from: Vu03:64317948..64318322- (Vigna unguiculata
ATGAGAAGGAAGATCCATGAACCCAGTGCAGTTCGCTCCTCCATTGTTCT
GCTACAAGAGAGATTCAGACAGTTGCAGAAAGTGAAAGAAATGAGGAAGA
AGAGAGAGTTGCTGAAAATGTTCACTGTAGAGCCTAAACACTTCAATTCC
AACCCCACCACGAGACAGTTTTTCCACCCTGAACTGATGAACCCGTCAGG
GTCACTTTCTCTATGGCCATCTTCACAGTGCATGGTAGAGTACAACAAAA
GCACTATTGAGAACCCAGTCTCCATGGATTCTACACATACACAGTCCCTT
CAGCCTTCATGTAAGAACCTCTATGATTGGGATTCGGGCTCTGACTCTGG
TGTTGATACCTCTCTTCACCTGTAA
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Coding sequence (CDS) from alignment at Vu03:64317948..64318322-

>Vigun03g440400.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g440400.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g440400.1; organism=Vigna unguiculata; type=CDS; length=375bp; location=Sequence derived from: Vu03:64317948..64318322- (Vigna unguiculata
ATGAGAAGGAAGATCCATGAACCCAGTGCAGTTCGCTCCTCCATTGTTCT
GCTACAAGAGAGATTCAGACAGTTGCAGAAAGTGAAAGAAATGAGGAAGA
AGAGAGAGTTGCTGAAAATGTTCACTGTAGAGCCTAAACACTTCAATTCC
AACCCCACCACGAGACAGTTTTTCCACCCTGAACTGATGAACCCGTCAGG
GTCACTTTCTCTATGGCCATCTTCACAGTGCATGGTAGAGTACAACAAAA
GCACTATTGAGAACCCAGTCTCCATGGATTCTACACATACACAGTCCCTT
CAGCCTTCATGTAAGAACCTCTATGATTGGGATTCGGGCTCTGACTCTGG
TGTTGATACCTCTCTTCACCTGTAA
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