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Transcript Overview
| Name | Vigun03g443200.1 |
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| Unique Name | Vigun03g443200.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 591 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun03g443200.1 | Vigun03g443200.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun03g443200.1_Vu_IT97K-499-35_v1.1 | Vigun03g443200.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun03g443200.1.v1.1.CDS.1 | Vigun03g443200.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 148..185
e-value: 2.6E-6
score: 37.0 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 148..186
score: 10.866 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 123..196
e-value: 8.8E-14
score: 52.7 |
| None | No IPR available | PFAM | PF13920 | zf-C3HC4_3 | coord: 145..190
e-value: 4.6E-11
score: 42.4 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 70..87 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 64..108 |
| None | No IPR available | CDD | cd16449 | RING-HC | coord: 148..185
e-value: 3.97477E-8
score: 45.9213 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 142..192 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun03g443200.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g443200.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g443200.1; organism=Vigna unguiculata; type=mRNA; length=591bp
ATGAGTCAACTCGGTCTCATTTTACAGGAATCGCTCCGCACAGAGAGAGA
AGCAAGAACAATCCTGGGTCTGTTAACGGACCAAATGGACGCCGTCGATG
GAGCCCAACGGAGGAGACGCACGCTCAAAGAACGCCTCAGATTCTCCGGA
ATGGGCTGCTGCGGGGCCACCTGGGTTTTCCGACCAACCCTAAGGGACGA
AGGGGGGACaccacaaccaccacaactacaacaacaaacaaACCCGGGTC
AAGATCCGAACCCGAACAGACCCGAATGCGTGGGTCCGAGGGGGTCGGGG
TCGGGTTCGGGCATGAATCTTGCGGCGGCGCTGGCGGCGGAGAGGCAGCT
GCGAGAATCTGAAGAGGGAAGGATGTCGTTGATGCGGCTGTTGGAGGAGA
AGGAGGGTGGTGAGGATGCGGCGGTGGATAATGATTCGGTGTGCTGCGTG
TGCATGGGGAGGAAGAAAGGGGCGGCATTTATCCCGTGTGGACACACTTT
CTGTAGAGTGTGTTCGAGAGAAATGTGGTTGAACAGAGGTAATTGTCCCC
TTTGTAACCGTTCCGTTCTCGACATTCTCCACATCTTCTGA back to topprotein sequence of Vigun03g443200.1_Vu_IT97K-499-35_v1.1 >Vigun03g443200.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g443200.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g443200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=197bp
MSQLGLILQESLRTEREARTILGLLTDQMDAVDGAQRRRRTLKERLRFSG
MGCCGATWVFRPTLRDEGGTPQPPQLQQQTNPGQDPNPNRPECVGPRGSG
SGSGMNLAAALAAERQLRESEEGRMSLMRLLEEKEGGEDAAVDNDSVCCV
CMGRKKGAAFIPCGHTFCRVCSREMWLNRGNCPLCNRSVLDILHIF* back to topmRNA from alignment at Vu03:64547399..64547989- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun03g443200.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g443200.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g443200.1; organism=Vigna unguiculata; type=mRNA; length=591bp; location=Sequence derived from: Vu03:64547399..64547989- (Vigna unguiculata
ATGAGTCAACTCGGTCTCATTTTACAGGAATCGCTCCGCACAGAGAGAGA
AGCAAGAACAATCCTGGGTCTGTTAACGGACCAAATGGACGCCGTCGATG
GAGCCCAACGGAGGAGACGCACGCTCAAAGAACGCCTCAGATTCTCCGGA
ATGGGCTGCTGCGGGGCCACCTGGGTTTTCCGACCAACCCTAAGGGACGA
AGGGGGGACACCACAACCACCACAACTACAACAACAAACAAACCCGGGTC
AAGATCCGAACCCGAACAGACCCGAATGCGTGGGTCCGAGGGGGTCGGGG
TCGGGTTCGGGCATGAATCTTGCGGCGGCGCTGGCGGCGGAGAGGCAGCT
GCGAGAATCTGAAGAGGGAAGGATGTCGTTGATGCGGCTGTTGGAGGAGA
AGGAGGGTGGTGAGGATGCGGCGGTGGATAATGATTCGGTGTGCTGCGTG
TGCATGGGGAGGAAGAAAGGGGCGGCATTTATCCCGTGTGGACACACTTT
CTGTAGAGTGTGTTCGAGAGAAATGTGGTTGAACAGAGGTAATTGTCCCC
TTTGTAACCGTTCCGTTCTCGACATTCTCCACATCTTCTGA back to topCoding sequence (CDS) from alignment at Vu03:64547399..64547989- >Vigun03g443200.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g443200.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g443200.1; organism=Vigna unguiculata; type=CDS; length=591bp; location=Sequence derived from: Vu03:64547399..64547989- (Vigna unguiculata
ATGAGTCAACTCGGTCTCATTTTACAGGAATCGCTCCGCACAGAGAGAGA
AGCAAGAACAATCCTGGGTCTGTTAACGGACCAAATGGACGCCGTCGATG
GAGCCCAACGGAGGAGACGCACGCTCAAAGAACGCCTCAGATTCTCCGGA
ATGGGCTGCTGCGGGGCCACCTGGGTTTTCCGACCAACCCTAAGGGACGA
AGGGGGGACACCACAACCACCACAACTACAACAACAAACAAACCCGGGTC
AAGATCCGAACCCGAACAGACCCGAATGCGTGGGTCCGAGGGGGTCGGGG
TCGGGTTCGGGCATGAATCTTGCGGCGGCGCTGGCGGCGGAGAGGCAGCT
GCGAGAATCTGAAGAGGGAAGGATGTCGTTGATGCGGCTGTTGGAGGAGA
AGGAGGGTGGTGAGGATGCGGCGGTGGATAATGATTCGGTGTGCTGCGTG
TGCATGGGGAGGAAGAAAGGGGCGGCATTTATCCCGTGTGGACACACTTT
CTGTAGAGTGTGTTCGAGAGAAATGTGGTTGAACAGAGGTAATTGTCCCC
TTTGTAACCGTTCCGTTCTCGACATTCTCCACATCTTCTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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