Vigun03g444200.1

Transcript Overview
NameVigun03g444200.1
Unique NameVigun03g444200.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length599
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu03supercontigVu03:64660089..64660687 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR248Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL016Pisum sativum Cameor genome v1aPisum sativum
psvuL303Pisum sativum Cameor genome v1aPisum sativum
psvuL308Pisum sativum Cameor genome v1aPisum sativum
crvuL043Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL343Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL884Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL520Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL031Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL607Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0062Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL0543Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0029Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0223Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0397Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0562Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0808Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL040Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL146Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR219Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR259Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL037Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL032Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL512Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL478Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL047Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL059Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuL500Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL685Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR161Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR179Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL029Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL561Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL084Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL200Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL030Cicer arietinum
carvuL564Cicer arietinum
ccavuL135Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL568Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR240Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR351Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR239Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR312Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL026Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL402Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL031Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL418Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL308Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL450Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR201Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR217Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vum_05G00703.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr06.1654Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan01g321300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Hedin2.R1.1g449600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_014662790.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr06.1837Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
jg39056.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Va09G055170.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-KK1_004562Cajanus cajan Asha genome v1.0Cajanus cajan
PvulFLAVERTChr03.1000494Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.006G147200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_017286Cajanus cajan Asha genome v1.0Cajanus cajan
LR48_mrnaVigan09g205300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigst.01G384100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.1g368760.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Cc_v2.0_28102.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.05G086200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Phvul.003G081100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_13185Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat1g178680.1Pisum sativum Cameor genome v1aPisum sativum
Cc_v2.0_19489.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigst.05G068600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_01G04151.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun06g159000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun03g444200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun06g159000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun03g444200Vigun03g444200_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun03g444200.1Vigun03g444200.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun03g444200.1_Vu_IT97K-499-35_v1.1Vigun03g444200.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun03g444200.1.v1.1.five_prime_UTR.1Vigun03g444200.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun03g444200.1.v1.1.CDS.1Vigun03g444200.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun03g444200.1.v1.1.three_prime_UTR.1Vigun03g444200.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun03g444200.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006969Stigma-specific protein Stig1PFAMPF04885Stig1coord: 27..123
e-value: 8.2E-34
score: 117.1

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun03g444200.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g444200.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g444200.1; organism=Vigna unguiculata; type=mRNA; length=599bp
ATCAGAGCATATAACTTGTTTTGCTAACACACAAAAATGAAGCACTTGAA
GACCCTCTTCCTGGTGGCCATGCTAATAATGGCTTTGGCGATTTCTGTGA
CAGCAAAAGAAGCAAAAAAAGTGAAAAACAGATTCCTTTCTGAGAGGGTG
GTGGTGACATGTGACAAATACCCAAATGTGTGTGACATTAAAGGTAGCGT
AGGATCAGATTGCTGCATGAAAAAATGTGTGAACTTGTCCAGAGATGGTT
CCAACTGCGGGAAGTGTGGAAAGAAATGCGGCTATGGAAAGATATGCTGC
GAAGGTAAGTGCGTGAATCCTAAGAGTAACAAGAAACATTGTGGGAAATG
TGGCAACAAGTGCAATGCTGAGAGTTCATGTGTCTTTGGAATGTGCAGCT
ATGCGTAAGATATGATTATCGACCAGAATATATGTATGATCACAATAAAG
CAGAGACCACAACTTCATAACTTCTGCTACTCTTGTTTTAAGTGTTTTAT
ATATGCATGTAAAACAATCTTTTCATTAAGCTCATTTTCTTTTGTAATTC
GTTTATGAAATTTTAATACTTAATATAtgatacatgtgccatcaattgt
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protein sequence of Vigun03g444200.1_Vu_IT97K-499-35_v1.1

>Vigun03g444200.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g444200.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g444200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=124bp
MKHLKTLFLVAMLIMALAISVTAKEAKKVKNRFLSERVVVTCDKYPNVCD
IKGSVGSDCCMKKCVNLSRDGSNCGKCGKKCGYGKICCEGKCVNPKSNKK
HCGKCGNKCNAESSCVFGMCSYA*
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mRNA from alignment at Vu03:64660089..64660687+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun03g444200.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g444200.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g444200.1; organism=Vigna unguiculata; type=mRNA; length=599bp; location=Sequence derived from: Vu03:64660089..64660687+ (Vigna unguiculata
ATCAGAGCATATAACTTGTTTTGCTAACACACAAAAATGAAGCACTTGAA
GACCCTCTTCCTGGTGGCCATGCTAATAATGGCTTTGGCGATTTCTGTGA
CAGCAAAAGAAGCAAAAAAAGTGAAAAACAGATTCCTTTCTGAGAGGGTG
GTGGTGACATGTGACAAATACCCAAATGTGTGTGACATTAAAGGTAGCGT
AGGATCAGATTGCTGCATGAAAAAATGTGTGAACTTGTCCAGAGATGGTT
CCAACTGCGGGAAGTGTGGAAAGAAATGCGGCTATGGAAAGATATGCTGC
GAAGGTAAGTGCGTGAATCCTAAGAGTAACAAGAAACATTGTGGGAAATG
TGGCAACAAGTGCAATGCTGAGAGTTCATGTGTCTTTGGAATGTGCAGCT
ATGCGTAAGATATGATTATCGACCAGAATATATGTATGATCACAATAAAG
CAGAGACCACAACTTCATAACTTCTGCTACTCTTGTTTTAAGTGTTTTAT
ATATGCATGTAAAACAATCTTTTCATTAAGCTCATTTTCTTTTGTAATTC
GTTTATGAAATTTTAATACTTAATATATGATACATGTGCCATCAATTGT
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Coding sequence (CDS) from alignment at Vu03:64660089..64660687+

>Vigun03g444200.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g444200.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g444200.1; organism=Vigna unguiculata; type=CDS; length=372bp; location=Sequence derived from: Vu03:64660089..64660687+ (Vigna unguiculata
ATGAAGCACTTGAAGACCCTCTTCCTGGTGGCCATGCTAATAATGGCTTT
GGCGATTTCTGTGACAGCAAAAGAAGCAAAAAAAGTGAAAAACAGATTCC
TTTCTGAGAGGGTGGTGGTGACATGTGACAAATACCCAAATGTGTGTGAC
ATTAAAGGTAGCGTAGGATCAGATTGCTGCATGAAAAAATGTGTGAACTT
GTCCAGAGATGGTTCCAACTGCGGGAAGTGTGGAAAGAAATGCGGCTATG
GAAAGATATGCTGCGAAGGTAAGTGCGTGAATCCTAAGAGTAACAAGAAA
CATTGTGGGAAATGTGGCAACAAGTGCAATGCTGAGAGTTCATGTGTCTT
TGGAATGTGCAGCTATGCGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006969Stig1