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Transcript Overview
| Name | Vigun03g446400.1 |
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| Unique Name | Vigun03g446400.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1868 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun03g446400.1 | Vigun03g446400.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun03g446400.1_Vu_IT97K-499-35_v1.1 | Vigun03g446400.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun03g446400.1.v1.1.five_prime_UTR.2 | Vigun03g446400.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
| Vigun03g446400.1.v1.1.five_prime_UTR.1 | Vigun03g446400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun03g446400.1.v1.1.CDS.1 | Vigun03g446400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun03g446400.1.v1.1.three_prime_UTR.1 | Vigun03g446400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR007608 | Senescence regulator S40 | PFAM | PF04520 | Senescence_reg | coord: 22..184
e-value: 2.6E-39
score: 135.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 49..90 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..29 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 48..90 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun03g446400.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g446400.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g446400.1; organism=Vigna unguiculata; type=mRNA; length=1868bp
GAAGTTTCACACTTAATCAGAAGAGATGAACCAATGGAAGAAAAACCCTT
TTGTTGTTTTGTTTTGTTTAATCTCTGAGTGGCGAATGAGTTACTACTAC
GTAAAAATAGATGAGTAGTTGAGGATAAGGTTGCAGATCCTTGAGGTACG
TTCAAGCCAATCGTGCATCACCACCTCTCCCAATCAGGATGCAGCCTTTC
AGAACTTTACAAAGATATTGAAAAAACAAAAGCCATTGAAGTTCTGTTTC
TGCacatacacacataaatacattgcatagctgataagatacataatagc
atgcaGTGTATCTGCAACAACTGAGTGATAAATTAGgcagcagcagcagc
agcagcagaagcCTGAGGGTGCGTTTAAAAAATTTTCACCTCTTCTTAAT
AGTGCTGTGCTGCTATTGATATGATGGGACTTTCTCTTTGGGTTTTGATC
GATGCCGCTATGCTCATGTCCTTCATCTGTGCTCTTTTGGACTTTTGCAA
TTAACCATTGGAGAGAGAGATCAACTCAGACTCACTCCAAGACCCATCAT
TTTCTTTCTGCCTTCTTTAATATCCATATGAGGTTTTTCACTTATGGGCC
AAAACTATAATAATACAACCCTTTTTTCGTGTTTGTGTGTGTGGTGTAGT
TGTACACATTTGCTGCTTTCTTGTCTTTTTCTGCCCCTTTGTCTTTTTTC
AGGTACCATTCTGTGAGTGAGTCTGCCCTCTTGAAACCTGTGATTTTCCT
TGGAGCCTTTAGGGGCCGGGGAAGAATTTTCAAGCCTTTCTTCCTTTTTC
CTGCGTGGTTTTCAAAAGGGTGTATCAGGTTCCCGTTTCAGAAATTTTCT
CAAAACCCTTTCCTTTTTGGAGGTTTTTGAAACAAGGACAAGGCAGCAGA
AGAGATTGCAGAACTAATAGATACCAATGGCAGATTGGAGTGGTTTTCTG
AACAAAAGCAGCGGTTTTGGTGGGGGATCACCCAGGAATGAAGATTTTGA
CGAAGAAGATGTGTGGGGTGGTGTGACCTTGGAGAGGGAGACTGACTTTT
TCTGCCCAGAAATGAAGCTATCTAAGGACTCCTCCGATTCTTCTTCTGCA
TGGTGCATGACAACCTCTCCGAGAAAGATCCCAAGGACTAATAATGTCAA
ACCACACTCCTTGAAATCTGATTCAAATGTGGTTCAAAGATCCTCAGCAC
CTATGGACATTCCTGATTGGTCTAAAATTTATGGGAAAAAGGGCATTGAG
GAAGAGGGTGTAAACAAAAAGTTTGATTTTGGTTATGGGGATCACTGTCT
tgatgattatgaagatgatgatgatggtatgatTCCTCCTCATCAATGGA
TTTCTAGGAAACTTGCAAGGAGCCAGATTTCATCTTTCTCTGTGTGTGAA
GGGATAGGGAGAACACTGAAAGGGAGAGATCTCAGCAAAGTGAGAAATGC
TATTTTGACCAAAACAGGTTTCATCGAGTAGTTGGTGgattcaccactat
gactcatgctcatgtcatcatcctcatCAGCATTGTCATACTAGGATCCC
ATGCAATCTTTTTTAGGTGTTTGATTATTGCTACTCATGTATGGAATGTG
AGGTCCTGCTGCTGTGGAAAttgtttttctcttttcttgttttgttttgt
tttgttGTTCTAAATTTTCTGGGAAAAAGAGGTTTTAGGGAAAGGAAAAA
GGAGGAGTGGCAGCCTCTGAAATTTTGTCTGAATCTGTATTGTATTGCAC
TAAGGCCAGTGGAGTACACTCTGTGTTCTTACTGAGTTTAATAGTCTTCA
TGTTTTTTCACTTATCATTAGTTAACTTTTAATGATTTAGACATAATAGA
ATATGTTTTTCTCATTCT back to topprotein sequence of Vigun03g446400.1_Vu_IT97K-499-35_v1.1 >Vigun03g446400.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g446400.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g446400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=185bp
MADWSGFLNKSSGFGGGSPRNEDFDEEDVWGGVTLERETDFFCPEMKLSK
DSSDSSSAWCMTTSPRKIPRTNNVKPHSLKSDSNVVQRSSAPMDIPDWSK
IYGKKGIEEEGVNKKFDFGYGDHCLDDYEDDDDGMIPPHQWISRKLARSQ
ISSFSVCEGIGRTLKGRDLSKVRNAILTKTGFIE* back to topmRNA from alignment at Vu03:64787938..64790046- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun03g446400.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g446400.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g446400.1; organism=Vigna unguiculata; type=mRNA; length=2109bp; location=Sequence derived from: Vu03:64787938..64790046- (Vigna unguiculata
GAAGTTTCACACTTAATCAGAAGAGATGAACCAATGGAAGAAAAACCCTT
TTGTTGTTTTGTTTTGTTTAATCTCTGAGTGGCGAATGAGTTACTACTAC
GTAAAAATAGATGAGTAGTTGAGGATAAGGTTGCAGATCCTTGAGGTACG
TTCAAGCCAATCGTGCATCACCACCTCTCCCAATCAGGATGCAGCCTTTC
AGAACTTTACAAAGATATTGAAAAAACAAAAGCCATTGAAGTTCTGTTTC
TGCACATACACACATAAATACATTGCATAGCTGATAAGATACATAATAGC
ATGCAGTGTATCTGCAACAACTGAGTGATAAATTAGGCAGCAGCAGCAGC
AGCAGCAGAAGCCTGAGGGTGCGTTTAAAAAATTTTCACCTCTTCTTAAT
AGTGCTGTGCTGCTATTGATATGATGGGACTTTCTCTTTGGGTTTTGATC
GATGCCGCTATGCTCATGTCCTTCATCTGTGCTCTTTTGGACTTTTGCAA
TTAACCATTGGAGAGAGAGATCAACTCAGACTCACTCCAAGACCCATCAT
TTTCTTTCTGCCTTCTTTAATATCCATATGAGGTTTTTCACTTATGGGCC
AAAACTATAATAATACAACCCTTTTTTCGTGTTTGTGTGTGTGGTGTAGT
TGTACACATTTGCTGCTTTCTTGTCTTTTTCTGCCCCTTTGTCTTTTTTC
AGGTACCATTCTGTGAGTGAGTCTGCCCTCTTGAAACCTGTGATTTTCCT
TGGAGCCTTTAGGGGCCGGGGAAGAATTTTCAAGCCTTTCTTCCTTTTTC
CTGCGTGGTTTTCAAAAGGGTGTATCAGGTTCCCGTTTCAGAAATTTTCT
CAAAACCCTTTCCTTTTTGGAGGTTTTTGAAACAAGGACAAGGTAGATTC
TTGACAGTATTCTCTTCTCTTACACCTTTCTGCTTTTTAATTCCCAATGA
AAGGGGAAAAAAATGTATTTTTTTATCTTATTGGTGGGTAACCATGATCA
CATTTGGGTGAAAAAAAGTTTCTAGTCATCTGTGTCTATATATACTGAAA
TAGATAACTGTGTTATCTATCATCCACTTCAATACACTTCCCTTGCTTTG
CTTCCTCTCAACCACCCTTATCTGTATTTGCAGGCAGCAGAAGAGATTGC
AGAACTAATAGATACCAATGGCAGATTGGAGTGGTTTTCTGAACAAAAGC
AGCGGTTTTGGTGGGGGATCACCCAGGAATGAAGATTTTGACGAAGAAGA
TGTGTGGGGTGGTGTGACCTTGGAGAGGGAGACTGACTTTTTCTGCCCAG
AAATGAAGCTATCTAAGGACTCCTCCGATTCTTCTTCTGCATGGTGCATG
ACAACCTCTCCGAGAAAGATCCCAAGGACTAATAATGTCAAACCACACTC
CTTGAAATCTGATTCAAATGTGGTTCAAAGATCCTCAGCACCTATGGACA
TTCCTGATTGGTCTAAAATTTATGGGAAAAAGGGCATTGAGGAAGAGGGT
GTAAACAAAAAGTTTGATTTTGGTTATGGGGATCACTGTCTTGATGATTA
TGAAGATGATGATGATGGTATGATTCCTCCTCATCAATGGATTTCTAGGA
AACTTGCAAGGAGCCAGATTTCATCTTTCTCTGTGTGTGAAGGGATAGGG
AGAACACTGAAAGGGAGAGATCTCAGCAAAGTGAGAAATGCTATTTTGAC
CAAAACAGGTTTCATCGAGTAGTTGGTGGATTCACCACTATGACTCATGC
TCATGTCATCATCCTCATCAGCATTGTCATACTAGGATCCCATGCAATCT
TTTTTAGGTGTTTGATTATTGCTACTCATGTATGGAATGTGAGGTCCTGC
TGCTGTGGAAATTGTTTTTCTCTTTTCTTGTTTTGTTTTGTTTTGTTGTT
CTAAATTTTCTGGGAAAAAGAGGTTTTAGGGAAAGGAAAAAGGAGGAGTG
GCAGCCTCTGAAATTTTGTCTGAATCTGTATTGTATTGCACTAAGGCCAG
TGGAGTACACTCTGTGTTCTTACTGAGTTTAATAGTCTTCATGTTTTTTC
ACTTATCATTAGTTAACTTTTAATGATTTAGACATAATAGAATATGTTTT
TCTCATTCT back to topCoding sequence (CDS) from alignment at Vu03:64787938..64790046- >Vigun03g446400.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g446400.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g446400.1; organism=Vigna unguiculata; type=CDS; length=555bp; location=Sequence derived from: Vu03:64787938..64790046- (Vigna unguiculata
ATGGCAGATTGGAGTGGTTTTCTGAACAAAAGCAGCGGTTTTGGTGGGGG
ATCACCCAGGAATGAAGATTTTGACGAAGAAGATGTGTGGGGTGGTGTGA
CCTTGGAGAGGGAGACTGACTTTTTCTGCCCAGAAATGAAGCTATCTAAG
GACTCCTCCGATTCTTCTTCTGCATGGTGCATGACAACCTCTCCGAGAAA
GATCCCAAGGACTAATAATGTCAAACCACACTCCTTGAAATCTGATTCAA
ATGTGGTTCAAAGATCCTCAGCACCTATGGACATTCCTGATTGGTCTAAA
ATTTATGGGAAAAAGGGCATTGAGGAAGAGGGTGTAAACAAAAAGTTTGA
TTTTGGTTATGGGGATCACTGTCTTGATGATTATGAAGATGATGATGATG
GTATGATTCCTCCTCATCAATGGATTTCTAGGAAACTTGCAAGGAGCCAG
ATTTCATCTTTCTCTGTGTGTGAAGGGATAGGGAGAACACTGAAAGGGAG
AGATCTCAGCAAAGTGAGAAATGCTATTTTGACCAAAACAGGTTTCATCG
AGTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR007608 | Senescence_reg_S40 |
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