Vigun04g006000.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun04g006000.1 vs. DB:Swiss
Match: NRPC2_ARATH (DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPC2 PE=2 SV=1) HSP 1 Score: 1788.85 bits (4632), Expect = 0.000e+0 Identity = 856/1152 (74.31%), Postives = 981/1152 (85.16%), Query Frame = 1 Query: 64 DDSGFDQRILTAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNFFVKTEIKKIVRANNLIRASRHPHIYLRFLNVKIRKPSIVDESVTDEVTPQTCRLSDQTYAAPICVDVEYTHGSRDDPRLHRRLNVEIGRMPIMLRSCCCVLYGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIETDKKGNIAASVTSSTEKIKTKTVIVVENEKFWLHLNQFPKKVPLMVVMKAMGMESDQEVTQMVGRDPRYSYLLLASFEECRKCNVYTQEQALEYLDKMVKRSMYSSNSAEKESRAFSVLRDVFLANVPVDGDNFRTKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDISTLLNR-TQNIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLISMCYSLGVEDLELLSAEELHTPDSFLVILNGLILGKHRKPLRFANAIRKLRRVGKIGEFVSVFVHNKQHCVYLASDGGRVCRPLVIADKGVSRIKEHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATPE-----------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRNDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKHSNDTSDRILRPNRAADTAGRMRVLDDDGIAAPGEILKPFDIYINKQSPIDTRTPKASAANLPDSAYRSNAQSFKGHGGE--VVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLADA 3477 DD D+ L+AP+KS DKFQL+PEFLKVRGLVKQHLDSFN+F+ I KIV+AN+ I ++ P IYLRF V++ +PSI++ + + + P CRL+D TYAAPI V++EY HGS + + NV IGRMPIMLRSC CVL+G+DE ELA+LGECPLDPGGYF+IKGTEKV+LIQEQLSKNRIII++DKKGNI ASVTSSTE K+KTVI +E EK +L L++F KK+P+++V+KAMGMESDQE+ QMVGRDPR+S LL S EEC V TQ+QAL+YL+ VK+ Y + EK+ RA S+LRD+FLA+VPV +NFR KC YV VM+RR+++A+LNKDAMDDKDYVGNKRLELSGQL+SLLFEDLFK+M +E D +L+KP +A FD S LN+ ++ I+LGLERTLSTGNF+IKRFRM RKGMTQVL RLSFIG+MG +T++SPQFEKSRKVSGPR+LQPSQWGMLCPCDTPEGE+CGLVKNLALMTHVTTDEEE PL++MCY LGV DLE+LSAEELHTPDSFLVILNGLILGKH +P FAN++R+LRR GKIGEFVSVF + KQHCVY+ASD GRVCRPLVIADKG+SR+K+HHMKEL DGVRTFDDF+RDGL+EYLDVNEENN LIALYE D T E TTHIEIEPFTILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL R D+LLYLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMS+SGYDIEDAIVMNK+SLDRGFGRCIVMKK A+ QK+ N T+DRIL P R A +M++LDDDG+A PGEI++P DIYINKQ P+DT T SA L DS YR + FKG GE VVDRV LCSDK +CIK++IRHTRRPELGDKFSSRHGQKGVCG I+ QEDFPFSE GICPDLIMNPHGFPSRMTVGKMIELLG KAGVSCGRFHYGSAFGERSGHADKVE IS TLV KGFSYSGKD +YSGI+G P++AYIFMGPIYYQKLKHMVLDKMHARGSGPRVM+TRQPTEG+++NGGLRVGEMERDCLIAYGASMLIYERLM+SSDPFEVQVC ACGLLGYYN+KLK +C+ CKNGD I+TMKLPYACKL+ QELQSMN+VPRLKL +A Sbjct: 13 DDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGT-PPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSA--LSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLTEA 1161
BLAST of Vigun04g006000.1 vs. DB:Swiss
Match: RPC2_MOUSE (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b PE=1 SV=2) HSP 1 Score: 1323.53 bits (3424), Expect = 0.000e+0 Identity = 647/1134 (57.05%), Postives = 830/1134 (73.19%), Query Frame = 1 Query: 91 LTAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNFFVKTEIKKIVRANNLIRASRHPHIYLRFLNVKIRKPSIVDE-SVTDEVTPQTCRLSDQTYAAPICVDVEYTHGSRDDPRLHRRLNVEIGRMPIMLRSCCCVLYGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIETDKKGNIAASVTSSTEKIKTKTVIVVENEKFWLHLNQFPKKVPLMVVMKAMGMESDQEVTQMVGRDPRYSYLLLASFEECRKCNVYTQEQALEYLDKMVKRSMYSSNSAEKE--SRAFSVLRDVFLANVPVDGDNFRTKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDISTLLNRTQNIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLISMCYSLGVEDLELLSAEELHTPDSFLVILNGLILGKHRKPLRFANAIRKLRRVGKIGEFVSVFVHNKQHCVYLASDGGRVCRPLVIADKGVSRIKEHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRNDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKHSNDTSDRILRPNRAADT---AGRMRVLDDDGIAAPGEILKPFDIYINKQSPIDTRTPKASAANLPDS-AYRSNAQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLA 3471 LTAP+ + +K++LLP FLKV+GLVKQH+DSFN+F+ EIKKI++AN + + P YL++LN+ + P + + +VT V+P CRL D TY+API VD+EYT GS+ R+ R + IGRMPIMLRS CVL G+ AE AKL ECPLDPGGYF++KG EKVILIQEQLSKNRII+E D+KG + ASVTSST + K++T + V+ +F+L N + +P++++ KAMG+ESDQE+ QM+G + S EEC+K ++TQ QAL+Y+ V+R +K A +L L +VPV NFR KCIY AVM+RR++ A + +DD+DY GNKRLEL+GQL+SLLFEDLFK +E+K + D+++ K +A FD+ + + Q IT G+ +STGN+ +KRF+M+R+G+TQVL RLS+I A+G MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TTD E+ P+I + +LGVED+ LL EEL P+ FLV LNG ILG R + + R +RR G I EFVS+ + CVY++SDGGR+CRP +I K + HM+EL G R F+DFL + L+EYLDVNEEN+ IALYE +TTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R D+L+YLL YPQ+P++ TKTIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NKASLDRGFGRC+V K +++++N T D+++ P A T R +LD DGI +PGE ++ + +NK P T+ P +N+P Y+ ++KG +++V++ S+ + IK L+R TRRPE+GDKFSSRHGQKGVCG IVPQED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG KV+ + E LV G++Y GKD++ SGITG PL+AYI+ GP+YYQKLKHMVLDKMHAR GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD FEV VC CGLLGY +G C YCK+ +S++++PYACKL+ QELQSMNI+PRLKLA Sbjct: 16 LTAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQ---RIIRNA-LPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQ--ITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIP-LEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLA 1129
BLAST of Vigun04g006000.1 vs. DB:Swiss
Match: RPC2_HUMAN (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B PE=1 SV=2) HSP 1 Score: 1322.38 bits (3421), Expect = 0.000e+0 Identity = 648/1148 (56.45%), Postives = 833/1148 (72.56%), Query Frame = 1 Query: 49 GNKVPDDSGFDQRILTAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNFFVKTEIKKIVRANNLIRASRHPHIYLRFLNVKIRKPSIVDE-SVTDEVTPQTCRLSDQTYAAPICVDVEYTHGSRDDPRLHRRLNVEIGRMPIMLRSCCCVLYGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIETDKKGNIAASVTSSTEKIKTKTVIVVENEKFWLHLNQFPKKVPLMVVMKAMGMESDQEVTQMVGRDPRYSYLLLASFEECRKCNVYTQEQALEYLDKMVKRSMYSSNSAEKE--SRAFSVLRDVFLANVPVDGDNFRTKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDISTLLNRTQNIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLISMCYSLGVEDLELLSAEELHTPDSFLVILNGLILGKHRKPLRFANAIRKLRRVGKIGEFVSVFVHNKQHCVYLASDGGRVCRPLVIADKGVSRIKEHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRNDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKHSNDTSDRILRPNRAADT---AGRMRVLDDDGIAAPGEILKPFDIYINKQSPIDTRTPKASAANLPDS-AYRSNAQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLA 3471 GN P+ L AP+ + +K++LLP FLKV+GLVKQH+DSFN+F+ EIKKI++AN + + P YL++LN+ + P + + +VT V+P CRL D TY+API VD+EYT GS+ R+ R + IGRMPIMLRS CVL G+ AE AKL ECPLDPGGYF++KG EKVILIQEQLSKNRII+E D+KG + ASVTSST + K++T + V+ +F+L N + +P++++ KAMG+ESDQE+ QM+G + S EEC+K ++TQ QAL+Y+ V+R +K A +L L +VPV NFR KCIY AVM+RR++ A + +DD+DY GNKRLEL+GQL+SLLFEDLFK +E+K + D+++ K +A FD+ + + Q IT G+ +STGN+ +KRF+M+R+G+TQVL RLS+I A+G MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TTD E+ P++ + +LGVED+ LL EEL P+ FLV LNG ILG R + N R +RR G I EFVS+ + CVY++SDGGR+CRP +I K + HM+EL G R F+DFL + L+EYLDVNEEN+ IALYE +TTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R D+L+YLL YPQ+P++ TKTIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NKASLDRGFGRC+V K +++++N T D+++ P A T R +LD DGI +PGE ++ + +NK P T+ P +N+P Y+ ++KG +++V++ S+ + IK L+R TRRPE+GDKFSSRHGQKGVCG IVPQED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG KV+ + E LV G++Y GKD++ SGITG PL+AYI+ GP+YYQKLKHMVLDKMHAR GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD FEV VC CGLLGY +G C YCK+ +S++++PYACKL+ QELQSMNI+PRLKL+ Sbjct: 9 GNLTPEQ-------LAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQ---RIIRNA-LPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILA-QGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQ--ITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIP-LEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLS 1129
BLAST of Vigun04g006000.1 vs. DB:Swiss
Match: RPC2_SCHPO (DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc2 PE=2 SV=1) HSP 1 Score: 1316.6 bits (3406), Expect = 0.000e+0 Identity = 646/1169 (55.26%), Postives = 844/1169 (72.20%), Query Frame = 1 Query: 16 DPSQ-QPMNGNGGNKVPDDSG------FDQRILTAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNFFVKTEIKKIVRANNLIRASRHPHIYLRFLNVKIRKPSIVD-ESVTDEVTPQTCRLSDQTYAAPICVDVEYTHGSRDDPRLHRRLNVEIGRMPIMLRSCCCVLYGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIETD-KKGNIAASVTSSTEKIKTKTVIVVENEKFWLHLNQFPKKVPLMVVMKAMGMESDQEVTQMV-GRDPRYSYLLLASFEECRKCNVYTQEQALEYLDKMVKRSMYS-SNSAEKESRAFSVLRDVFLANVPVDGDNFRTKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDISTLLNRTQNIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLISMCYSLGVEDLELLSAEELHTPDSFLVILNGLILGKHRKPLRFANAIRKLRRVGKIGEFVSVFVHNKQHCVYLASDGGRVCRPLVIADKGVSRIKEHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRNDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKHSNDTSDRILRPNRAADTA---GRMRVLDDDGIAAPGEILKPFDIYINKQSPIDTRTPKASAANLP--DSAYRSNAQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLAD 3474 DP + QP GG + G + + L PV + DK+QLLP FLKV+GLVKQHLDS+N+FV ++KKIV+AN + + P YL++L++++ P D +++ ++P CRL D TY A I VD+EYT G + + RR NV IGRMP+MLRS CVL G++E E+A L ECPLDPGGYF++KGTEKVIL+QEQLSKNRII+E + KKG ASVTSST + K+KT ++ +N K +L N +P++VV+KAMG++SDQE+ ++V G + Y L S EEC K N+YT +QALEY+ VK + + +N A VL V LA++ V FR K +Y+ +M RR++ A+++ +DD+DYVGNKRLEL+GQL++LLFEDLFK +++K DK+L KP + + FD L + IT G+ R LSTGN+ +KRF+MER G+T VL RLS+I A+G MTR++ QFEK+RKVSGPR+LQ SQ+GMLC DTPEGEACGLVKNLALMTH+TTDEEE P+I + Y+ G+ED+ ++S ELH+ ++LV LNG ILG R P F + RKLRR GKI F+ +F++ Q V++++DGGR+CRPL+I G+ +++ H++ L +G F+DFL+ GL+EY+DVNEEN++LI++YE D TP+TTH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL+R D+LLYL+VYPQ+P++ TKTIEL+GYDKL AGQNATVA+MSYSGYDIEDA+V+NK+S+DRGFGRC V K+S +++K+ N T DRI P R +T + V++DDG+A G ++P IY+NKQ+P + + + +S Y++ ++K +D+V+L + IK L+R TRRPELGDKFSSRHGQKGVCG IV QED PF+++GICPD+IMNPHGFPSRMTVGKMIELL GK GV G YG+ FG KVE S LV G++YSGKD + SGITG L+AYIFMGPIYYQKLKHMV+DKMHAR GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYGAS L+ ERLM+SSD +V VC CGLLGY G C+ C++ ++ M +PYA KL+ QEL SMNIVPRL L D Sbjct: 8 DPQKSQPKINKGGIGKDESFGALFKPVYKGKKLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWFYLKYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYTRGKQ----VVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKSKTYVITKNGKLYLKHNSVADDIPIVVVLKAMGLQSDQEIFELVAGAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITPDTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFG-----GTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDACDVDVCGQCGLLGY------KGWCNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLALED 1161
BLAST of Vigun04g006000.1 vs. DB:Swiss
Match: RPC2_YEAST (DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RET1 PE=1 SV=2) HSP 1 Score: 1299.65 bits (3362), Expect = 0.000e+0 Identity = 638/1134 (56.26%), Postives = 827/1134 (72.93%), Query Frame = 1 Query: 91 LTAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNFFVKTEIKKIVRANNLIRASRHPHIYLRFLNVKIRKPSIVDESVTDEVTP-QTCRLSDQTYAAPICVDVEYTHGSRDDPRLHRRLNVEIGRMPIMLRSCCCVLYGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIETD-KKGNIAASVTSSTEKIKTKTVIVVENEKFWLHLNQFPKKVPLMVVMKAMGMESDQEVTQMV-GRDPRYSYLLLASFEECRKCNVYTQEQALEYLDKMVKRSMYSSNSAEKESRAFSVLRDVFLANVPVDGDNFRTKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDISTLLNRTQNIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLISMCYSLGVEDLELLSAEELHTPDSFLVILNGLILGKHRKPLRFANAIRKLRRVGKIGEFVSVFVHNKQHCVYLASDGGRVCRPLVIADKGVSRIKEHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRNDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKHSNDTSDRI--LRPNRAADTAGRMRVLDDDGIAAPGEILKPFDIYINKQSPIDTR-TPKASAANLPDSAYRSNAQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLAD 3474 LT + +A DK+ LLP FLKV+GLVKQHLDSFN+FV T++KKI++AN LI + P YL+++++++ K S S D +TP CRL D TY+API VD+EYT G + +H+ +VEIGRMPIMLRS C+LY DE+++AKL ECPLDPGGYF++ GTEKVIL+QEQLSKNRII+E D KKG + ASVTSST + K+KT ++ +N K +L N +++P+ +V+KA G+ SD E+ Q+V G D Y + + EE K ++YTQ+QALEY+ VK + +E + +A++ V+ +FR K +Y+A+M RR++ A+ N +DD+DYVGNKRLEL+GQL+SLLFEDLFK + K DK+L KP++A +D +N N IT GL R +STGN+ +KRF+MER G+T VL RLS+I A+G MTR+S QFEKSRKVSGPRALQPSQ+GMLC DTPEGEACGLVKNLALMTH+TTD+EE P+ +CY LGVED+ L+ + LH ++ V LNG ++G R P +F R LRR GK+ EF+S++ ++ Q V++A+DGGR+CRPL+I G SR+K+ H+++L+DG FDDFL+ GL+EYLDVNEEN++ IALYE D P TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ +R D+LLYL+ YPQ+P++ TKTIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC +K + V+++++N T D I +R + D + + L DG+ G ++ IYINK P ++ P + N+ + YR ++G +D+V++ + IK L+R RRPELGDKFSSRHGQKGVCG IV QED PF+++GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV G YG+ FG K+E +S+ LV +GF+YSGKD +YSGITG LQAYIF GPIYYQKLKHMVLDKMHAR GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM+SSD FEV VC CGL+GY +G C+ CK+ + I M +PYA KL+ QEL SMNI PRL+L D Sbjct: 34 LTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKS--SSSTKDYLTPPHECRLRDMTYSAPIYVDIEYTRGR--NIIMHK--DVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQE--GIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSASLHL--NYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNV-QTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGY------SGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145
BLAST of Vigun04g006000.1 vs. DB:Swiss
Match: RPC2_DROME (DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster OX=7227 GN=RpIII128 PE=2 SV=2) HSP 1 Score: 1249.57 bits (3232), Expect = 0.000e+0 Identity = 613/1139 (53.82%), Postives = 812/1139 (71.29%), Query Frame = 1 Query: 79 DQRILTAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNFFVKTEIKKIVRANNLIRASRHPHIYLRFLNVKIRKPSIVDE-SVTDEVTPQTCRLSDQTYAAPICVDVEYTHGSRDDPRLHRRLNVEIGRMPIMLRSCCCVLYGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIETDKKGNIAASVTSSTEKIKTKTVIVVENEKFWLHLNQFPKKVPLMVVMKAMGMESDQEVTQMVGRDPRYSYLLLASFEECRKCNVYTQEQALEYL-DKMVKRSMYSSNSAEKESRAFSVLRDVFLANVPVDGDNFRTKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDISTLLNRTQNIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLISMCYSLGVEDLELLSAEELHTPDSFLVILNGLILGKHRKPLRFANAIRKLRRVGKIGEFVSVFVHNKQHCVYLASDGGRVCRPLVIADKGVSRIKEHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRNDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKHSNDTSDRILRPNRAADTAG---RMRVLDDDGIAAPGEILKPFDIYINKQSP-IDTRTP-KASAANLPDSAYRSNAQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLAD 3474 D + + P+K +K++L+P FL+V+GLVKQH+DSFN F+ +IKKIV+AN L+ + P YL++L+V++ KP I D ++T TP CRL D TY+API VD+EYT G++ R+ R N+ IGRMP+MLR C L G+ E EL+KL ECPLDPGGYFV++G EKVILIQEQLS N+++ E D G + VTSST + K++T+++ ++ K++L N +P++V+ KA+G+ SDQE+ ++G D + AS + V+TQ++ALEY+ K+V + S+ + A +L LA+VPVD N + K IYV++M+RR+M A L+K DD+DY GNKRLEL+G L+S++FEDLFK M E+K + DK + K KA FD+ + Q IT GLE +S+GN+ IKRF+MER G+TQVL RLS+I A+G MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P++ + ++ GVED+ +S ++ P+ FLV +NG +LG +R +RR G++G +VSV Q C+Y+ +DGGR+CRP VI + +K+HH+ EL G+R FDDFL DGL+EYLDVNEEN++ IA E TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ R DSL+Y LVYP P++ +KTIEL +DKL AGQNATVAVMSYSGYDIEDA+++NKAS+DRG+GRC+V K +++++N T DRI+ P + A T + VLD DGI APGE ++ I INK+ P + + P + +A +P Y + S+KG ++RV++ ++ +++ IK L+R TR PE+GDKFSSRHGQKGV G IV QED PF++ GICPD+IMNPHGFPSRMTVGK +ELLGGKAG+ G+FHYG+AFG KVE I L GF+Y GKDF YSGITG PL+AYI+ GP+YYQKLKHMV DKMHAR GP+ +LTRQPT+GR+R GGLR+GEMERDCLI+YGASMLI ERLM+SSD FEV VC CG + Y C +C++ +S + +PYACKL+ QEL SMN+VP++ L + Sbjct: 20 DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQ---RIKRN-NLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKV-KAAQFDVVKHMRAAQ--ITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP---YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAY------CSWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILEN 1136
BLAST of Vigun04g006000.1 vs. DB:Swiss
Match: RPC2_DICDI (DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum OX=44689 GN=polr3b PE=3 SV=1) HSP 1 Score: 849.351 bits (2193), Expect = 0.000e+0 Identity = 400/650 (61.54%), Postives = 495/650 (76.15%), Query Frame = 1 Query: 1528 CGLVKNLALMTHVTTDEEEAPLISMCYSLGVEDLELLSAEELHTPDSFLVILNGLILGKHRKPLRFANAIRKLRRVGKIGEFVSVFVHNKQHCVYLASDGGRVCRPLVIADKGVSRIKEHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRNDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKHSNDTSDRILRPNRAADTAGRMRVLDDDGIAAPGEILKPFDIYINKQSPIDTRTPKASAANLPDSAYRSNAQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLADA 3477 CGLVKN ALM+HVTTD+ E PL+ + Y+LGV+D+ L++ EEL++ +++LV+LNG I+G H P F +RK+RR G+I EFVS+ + Q + +A DGGR+CRP++I D R+ + H+++L DG+RTFDDF+R+G++EYLDVNEEN++ +A E P TTH+EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R D+LLYLLV+ QRPL T+TI+L+ + KL AG NATVAVMSYSGYDIEDA+VMNKASLDRGFGRCIV+KK I+KH NDTSDRI P + +LD DGIA PGE+ + I +NK SP++T + +PDSAY+S+ +K +D+V+L S D+ + IK L+R TRRPELGDKFSSRHGQKGVCG IV QED PFS+ GICPD+IMNPHGFPSRMT+GKMIELL GKAGV G+F +G+ FG D+VE IS+ L+SKGFSY GKD++ SG+TG PL +IF GPI+YQKLKHMV+DKMHAR GP V LTRQPTEGRAR GGLR+GEMERDCLI YGAS LI ERLM+SSD F V C CG LGY G C YCK+ IST+++PYACKL+ QELQ+MNIVPRLKL D+ Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIHNSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQEHIEDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPWTTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGKFGFGTCFG-----GDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISSDRFTVYACKNCGFLGY------EGYCQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRLKLVDS 1608 HSP 2 Score: 493.041 bits (1268), Expect = 7.048e-150 Identity = 246/484 (50.83%), Postives = 340/484 (70.25%), Query Frame = 1 Query: 91 LTAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNFFVKTEIKKIVRANNLIRASRHPHIYLRFLNVKIRKPSIVDESVTD-EVTPQTCRLSDQTYAAPICVDVEYTHGSRDDPRLHRRLNVEIGRMPIMLRSCCCVLYGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIETDKKGNIAASVTSSTEKIKTKTVIVVENEKFWLHLNQFPKKVPLMVVMKAMGMESDQEVTQMVGRDPRYSYLLLASFEECRKCNVYTQEQALEYLD---KMVKRSMYSSNSAEKESRAFSVLRDVFLANVPVDGDNFRTKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDISTLLNRTQNIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 1530 LT +K +K++L+P F+K RGLVKQH+DSFNFF+ E+KKIV+AN + A P ++RF ++ + P+ ++++ ++TPQ CRL D TY+API V++EYT R+ + +R +V IG +PIMLRS CVL + ++A LGECP+DPGGYF+++G EKVIL EQLSKNRIIIE D KG +ASVTSST + K++T + ++NEK +L N F + +P+ +V+K MG+E+DQE+ Q+VG D + + S EEC+KC V+T QAL+YL K+ +R N K A +L V L +VPV NFR K IY+++M+RRI+ A +K +DDKDY GNKR+ELSGQL+SLLFED FK +E+K D+ + K ++A+N D+ L+ RT + IT G +S+G + +KRFRMER G++QVL RLS+I MG MTR+ QFEK+RKV+GPR+LQPSQWGMLCP DTPEGEAC Sbjct: 29 LTDDIKPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTAENDPSYFVRFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYT---RNKQIISKR-DVHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQLSKNRIIIEMDSKGLPSASVTSSTHERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGMGVETDQEMAQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLI-RT-DTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
BLAST of Vigun04g006000.1 vs. DB:Swiss
Match: RPOB_THECE (DNA-directed RNA polymerase subunit B OS=Thermococcus celer OX=2264 GN=rpoB PE=3 SV=1) HSP 1 Score: 739.569 bits (1908), Expect = 0.000e+0 Identity = 417/1133 (36.80%), Postives = 648/1133 (57.19%), Query Frame = 1 Query: 118 DKFQLLPEFLKVRGLVKQHLDSFNFFVKTEIKKIVRANNLIRASRHPHIYLRFLNVKIRKPSIVD-ESVTDEVTPQTCRLSDQTYAAPICVD-VEYTHGSRDDPRLHRRLNVEIGRMPIMLRSCCCVLYGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIETDKKGN-IAASVTSSTEKIKTKTVIVVENEK---FWLHLNQFPKKVPLMVVMKAMGMESDQEVTQMVGRDPRYSYLLLASFEECRKCNVYTQEQALEYLDKMVKRSMYSSNSAEKESRAFSVLRDVFLANVPVDGDNFRTKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDISTLLNRTQ---NIITLGLERTLSTGNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLISMCYSLGVEDLELLSAEELHTPDSFLVILNGLILGKHRKPLRFANAIRKLRRVGKIGEFVSVFVHNKQHC--VYLASDGGRVCRPLVIADKGVSRIKEHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRNDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKHSNDTSDRILRPNRAAD---TAGRMRVLDDDGIAAPGEILKPFDIYINKQSPIDTRTPKASAANLPDSAYRSNAQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLAD 3474 D + ++ + K +GLV+QHLDS+N F+ +++++ ++ P ++F V++ +P + + + P R+ + TY+API ++ + +G + + V IG +PIML+S C LYG + EL KLGE P DPGGYF++ G+E+VI+ E L+ N+ ++E D++ N I A S + + +I VE K ++ L P+ V + VM+A+G+ SD+E+ + V DPR ++L + E+ +V TQE+AL+Y+ K+ S+ + RA +++ + L ++ V+ + + K Y+ +M R+++ L DDKD+ NKRL+L+G L+ LF F + +++ K + + F+ R ++++ +E L+TG++ R G++Q+L R ++I + H+ RV+ + + R L + WG +CP +TPEG CGLVKNLALM+ +TT E + LGV +E E PD + + LNG+++G F N IR RR GKI + ++V ++ + +Y+ SD GRV RPL+I + G ++ H++ + +G T+ D ++ G++EYLD EE N L+A + + T E TH+E+ P ILG+ A L+PYP HN PRNTY M KQ++G N R D+ +L+ YPQ PL+ ++ ++ VG+++ AGQN VAV+SY+GY++EDAI+MNKAS++RG R + Y A +++ +DR P+ R LD+DGI P + D+ + + SP ++ + R + + + VVD+V++ D +K R R PE GDKF+SRHGQKGV G IVPQED P++E GI PDLI+NPHG PSRMTVG++IE +GGK GR G+AF + E + + L GF +SG++ +Y GITG L+A +F+G IYYQ+L HMV DKMHAR GP +LT+QPTEGRAR GGLR GEMERD LI +GA+ML+ ERL+ SD EV VC CG + + + C C ++IS +++ YA KL++ EL++M I P LKL D Sbjct: 15 DLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVKPD-IPDFEVKFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNGVSQEA-----VEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERDERQNRIIAKCFSY--RHGYRALITVERRKDGILYVKLPNVPRPVKFVYVMRALGLLSDREIVEAVSDDPRIQHVLFDNLEDA--SDVTTQEEALDYIGKL---SLPGQPKEYRLRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSWP-----GGRTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGVPEEEVREYLERLGVVPIE----ERRPNPDLWRLYLNGVLVGTVEDGEGFVNRIRTDRRSGKISDIINVALYQDEDVKEIYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKNGSLTWSDLVKMGVIEYLDAEEEENALVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEIPDPTIQGYLGERYYRHLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAF-----IGEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMGIRPSLKLVD 1120
BLAST of Vigun04g006000.1 vs. DB:Swiss
Match: RPB2_ENCCU (DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=RPB2 PE=3 SV=1) HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0 Identity = 436/1164 (37.46%), Postives = 643/1164 (55.24%), Query Frame = 1 Query: 124 FQLLPEFLKVRGLVKQHLDSFNFFVKTEIKKIVRANNLIRASRHP--------HIYLRFLNVKIRKPSIVDES--VTDEVTPQTCRLSDQTYAAPICVDV-EYTHGSRDDPRLHRRLNVEIGRMPIMLRSCCCVLYGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIETDKKGNIA-----ASVTSSTEK------------IKTKTVIVVENEKFWLHLNQFPKKVPLMVVMKAMGMESDQEVTQMV--GRDPRYSYLLLASFEECRKCNVYTQEQALEYLDKMVKRSMYSSNSAEKE-SRAFSVLRDVFLANVPVDGDNFRTKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDISTLLNRTQNIITLGLERTLSTGNFEIKRFRME-RKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLISMCYSLGVEDLELLSAEELHTPDSFLVILNGLILGKHRKPLRFANAIRKLRRVGKIGEFVSVFVHNKQHCVYLASDGGRVCRPLVIADKGVSRIKEHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALY----------EGDATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRNDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKHSNDTSDRILRPNRAADTAGRMR-----VLDDDGIAAPGEILKPFDIYINKQSPIDTRTPKASAANLPDSAYRSNAQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLAD 3474 + ++ F + +GLV+Q LDSF+ FVKT++++++ + +I P I +RF + + KP + ES T V P R+ D TYA+P+ +DV + T H+ V G +P+MLRS CVLYG + +L LGECP D GGYF++ G+EKVI+ QE+++ N + + KK A A + S EK ++ VI V L + VPL V+ +A+G SD+E+ + D LL S EE V Q AL+Y+ K RS EK A +L L ++ K ++ +++R++ L + DD+D+ G KR++LSG L++ LF LFK + + K ++ + F+I+ L +IIT G L+TGN+ + M+ R G+ QVL R +F+ + H+ RV+ EK K++ PR L + WGM+CP +TPEG+ACGLVKNL+LM +++ PL+ GVE LE +S +L V NG+ +G H P+ +++ LRR ++ + VS+ ++ + + SD GR CRPL++ I +++L G +D+ + G +E+LDV EE ++IA+ D + TH EI P ILG+ A IP+P HNQSPRNTYQ AMGKQAMG A N L R D+L +L YPQ+PL+TTK++E + + +L +GQNA VA+ YSGY+ ED+I+MN++++DRG R + Y+ ++ +P+R A RM+ LDDDG+ +PG + D+ I K +PI P+ S P Y+ ++ + + +VD V++ ++KD K +R R P++GDKF+SRH QKG G + QED PF+ +GI PD+I+NPH PSRMT+G +IE L GK G + F SG V+ IS L S GF G + +Y+G+TG L+A +F GP YYQ+LKHMV DK+HAR GP +LTRQP EGR+R+GGLR GEMERDC+I++GAS + ERLM SD + VC CGLL K+ C C N +S +++PYA KL+IQEL MNI PR++ + Sbjct: 11 WSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAPTAGIETQKRIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVYVF--KKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGVIRVS-------LPLVKQDVPLFVLYRALGFLSDKEIIDHILYEDDEEMFELLKESIEE--GTVVQDQNVALDYIGK---RSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIEN---GREFNIA--LGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAATKIFV--NGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGA--VLRMKNLNYNKLDDDGLISPGTRVTGDDVLIGKITPI--LDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIV-TNKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPF---SGVT--VDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCGLLAMGGSKVNE--CKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRIRFEE 1141
BLAST of Vigun04g006000.1 vs. DB:Swiss
Match: RPB2_HUMAN (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1) HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0 Identity = 411/1160 (35.43%), Postives = 659/1160 (56.81%), Query Frame = 1 Query: 130 LLPEFLKVRGLVKQHLDSFNFFVKTEIKKIVRAN---NLIRASRH--------PHIYLRFLNVKIRKPSIVD-ESVTDEVTPQTCRLSDQTYAAPICVDVEYTHGSRDDPRLH-RRLNVEIGRMPIMLRSCCCVLYGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIETDK------KGNIAASVTSSTEKIKTKTVIVVE-----------NEKFWLHLNQFPKKVPLMVVMKAMGMESDQEVTQMV---GRDPRYSYLLLASFEECRKCNVYTQEQALEYLDKMVKRSMYSSNSAEKESR-AFSVLRDVFLANVPVDGDNFRTKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDISTLLNRTQNIITLGLERTLSTGNF-EIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEAPLISMCYSLGVEDLELLSAEELHTPDSFLVILNGLILGKHRKPLRFANAIRKLRR-VGKIGEFVSVFVHNKQHCVYLASDGGRVCRPLVIADKGVSRIKEHHMKELMD---GVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATPET-------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRNDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQKHSNDTSDRILRPNRAADTAGRMRV---LDDDGIAAPGEILKPFDIYINKQSPIDTRTPKASAANLPDSAYRSNAQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRL 3462 ++ + +GLV+Q LDSF+ F++ +++IV +L ++H P L+F + + KP+ + + + P RL + TY+AP+ VD+ T + +L + IG++PIMLRS C+L G + +L +L ECPLDPGGYF+I G+EKV++ QE+++ N + + K G + + +S+ T V ++ ++ L ++VP+++V +A+G SD+++ + + DP ++ S +E QEQ + L+ + R + EK + A VL+ L +V V K ++ M+ R++ A L + +DD+D+ GNKRL+L+G L++ LF +FK++ EV+ K +D+ K+F++ + II+ GL+ +L+TGN+ + K+ R G++QVL RL+F + H+ R++ + K++ PR L + WGM+CP +TPEG A GLVKNLALM +++ + +P++ +E+LE +S + D+ + +NG +G H+ P + N +RKLRR + I VS+ ++ + + +D GR+CRPL+I +K +K+ H+ +L + ++ D + G++EY+D EE ++A+ D + TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG N R D+L ++L YPQ+PL+TT+++E + + +L AG N+ VA+ SY+GY+ ED+++MN++++DRGF R + + Y K D + +P R R + LDDDG+ APG + D+ I K + + + N + R + + +VD+V++ +++ K +R R P++GDKF+SRHGQKG CG QED PF+ +GI PD+I+NPH PSRMT+G +IE L GK + G + F + A V+ IS L G+ G + +Y+G TG + + IF+GP YYQ+LKHMV DK+H+R GP +L RQP EGR+R+GGLR GEMERDC IA+GA+ + ERL +SDP++V VC CG++ N + T C C+N +IS +++PYACKL+ QEL SM+I PR+ Sbjct: 29 VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA----FVIQEQNVA-LNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR---GKDFNLELAIK--TRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI--ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK-RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFND----AVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171 The following BLAST results are available for this feature:
BLAST of Vigun04g006000.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun04g006000.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g006000.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g006000.1; organism=Vigna unguiculata; type=mRNA; length=3872bpback to top protein sequence of Vigun04g006000.1_Vu_IT97K-499-35_v1.1 >Vigun04g006000.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g006000.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g006000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=1160bpback to top mRNA from alignment at Vu04:404027..424220+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun04g006000.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g006000.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g006000.1; organism=Vigna unguiculata; type=mRNA; length=20194bp; location=Sequence derived from: Vu04:404027..424220+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu04:404027..424220+ >Vigun04g006000.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g006000.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g006000.1; organism=Vigna unguiculata; type=CDS; length=3480bp; location=Sequence derived from: Vu04:404027..424220+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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