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Transcript Overview
| Name | Vigun04g010400.1 |
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| Unique Name | Vigun04g010400.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1092 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun04g010400.1 | Vigun04g010400.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun04g010400.1_Vu_IT97K-499-35_v1.1 | Vigun04g010400.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun04g010400.1.v1.1.CDS.5 | Vigun04g010400.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun04g010400.1.v1.1.CDS.4 | Vigun04g010400.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun04g010400.1.v1.1.CDS.3 | Vigun04g010400.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun04g010400.1.v1.1.CDS.2 | Vigun04g010400.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun04g010400.1.v1.1.CDS.1 | Vigun04g010400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun04g010400.1.v1.1.three_prime_UTR.1 | Vigun04g010400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun04g010400.1.v1.1.five_prime_UTR.1 | Vigun04g010400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
BLAST of Vigun04g010400.1 vs. DB:Swiss
Match: SPER3_ARATH (Protein SPEAR3 OS=Arabidopsis thaliana OX=3702 GN=SPEAR3 PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 5.659e-11 Identity = 64/159 (40.25%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 121 RGLGVAQLEKIRLHGQMGCGG-----AYHPPLHAPYPSNFTNEDPTLQTPXXXXXXXXXXXXXXXXXXXXXXXGFQHNIVMSL--PEYERTSIRYGDSQPTNTARWEHGNSTAQTRPLLNLYDSQQHIDTKKRRXXXXXXXXXXXXXXDTQEPDLELRL 576
RGLGVAQLEKIRLHG+ C +YHP + ED +Q Y S+PSSS +SS+ A YGF N++M+ +YERT+IRYGDSQP W +++ + ++ +H + +R+ S+G QN E+S+ E DLELRL
Sbjct: 44 RGLGVAQLEKIRLHGEYNCNSFNTYPSYHPSTYQ--------EDVRIQGGYPSIPSSSPSFSYASSSPPPAPYGFHPNMMMNANNDQYERTTIRYGDSQPHRAPSWNPSYGILESQHFVEP-NTTRHFLHEDQRNISLGSGIQNFETSEANELDLELRL 193
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 13..27 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 127..158 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 70..104 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..49 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 168..183 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 74..104 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 126..194 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun04g010400.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g010400.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g010400.1; organism=Vigna unguiculata; type=mRNA; length=1092bp
TAACTTAACATTGAAATCTATACACAATCTGATCCAGCGATGCAATTATT
CCTCAGTTTTGCTAGAAGCTTAAAAGAGACCACACGAGATCTCTGATTTC
TCACCCAGAAATTAAGTGCTGGAACCATTTTTTTTGCCAGAAAAAAGGAG
AAGAGAAAGAAGCATGGATGGAAGTTATTTCGGAGAAGCAAACATGGGAA
ATGAAAGAGTGAGTGGttcttcttcttcttcttcttcAAGGAAAGGGAAG
AAGAACAATCAAGAGAAGCCAAAGCAACCACAGAGAGGATTAGGAGTTGC
TCAATTGGAGAAAATCAGATTACATGGCCAAATGGGTTGTGGTGGTGCTT
ATCATCCTCCTCTGCACGCTCCTTACCCTTCTAACTTCACCAATGAAGAT
CCAACGCTGCAAACACCCTATTCATCGCTACcatcttcatcatctttttc
ttactcctcttcatctACCTCGTACTCAGCTTCCTATGGCTTTCAACACA
ACATTGTGATGTCCCTACCCGAGTATGAAAGAACAAGCATTAGATATGGA
GATTCTCAGCCAACTAATACTGCAAGATGGGAACATGGCAATTCCACTGC
TCAAACGAGACCTTTACTTAACCTATATGACTCACAACAACACATAGATA
CCAAGAAGCGTAGAAGTGGTTCAGTGGGTGGAAGCAGTCAGAACTCTGAA
TCAAGTGACACTCAAGAACCAGATTTGGAGCTAAGACTATCTCTTTGATC
TGCTGCCACAGGAAAGAGTGAAAAAATTCTAGTAATTGTAATGCTTTTGT
TTACAATTATGAATTGAAAAAGCACATGAACAAGCCAATGTGTTTGTTTT
AAAGTTTCATACTCTTGTTTCATGGAAGATATAGATATTGACTACTCTTT
GCATAAAAGCAATGCAAATTTAAACTTCTCTTTTAACGTAAATCATCAAA
GAAACTCAAGAGAAGTTCTTTTTCTGATAGCTATAGCTCttattttattt
gatttttgtttctcttagtttGGAATCTTTCATGAATTCAAGGCTCCATA
TGTGACAAATGCTACTGAAATGATCATGAAAAGATCATACGG back to topprotein sequence of Vigun04g010400.1_Vu_IT97K-499-35_v1.1 >Vigun04g010400.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g010400.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g010400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=195bp
MDGSYFGEANMGNERVSGSSSSSSSRKGKKNNQEKPKQPQRGLGVAQLEK
IRLHGQMGCGGAYHPPLHAPYPSNFTNEDPTLQTPYSSLPSSSSFSYSSS
STSYSASYGFQHNIVMSLPEYERTSIRYGDSQPTNTARWEHGNSTAQTRP
LLNLYDSQQHIDTKKRRSGSVGGSSQNSESSDTQEPDLELRLSL* back to topmRNA from alignment at Vu04:775892..778013- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun04g010400.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g010400.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g010400.1; organism=Vigna unguiculata; type=mRNA; length=2122bp; location=Sequence derived from: Vu04:775892..778013- (Vigna unguiculata
TAACTTAACATTGAAATCTATACACAATCTGATCCAGCGATGCAATTATT
CCTCAGTTTTGCTAGAAGCTTAAAAGAGACCACACGAGATCTCTGATTTC
TCACCCAGAAATTAAGTGCTGGAACCATTTTTTTTGCCAGAAAAAAGGAG
AAGAGAAAGAAGCATGGATGGAAGTTATTTCGGAGAAGCAAACATGGGAA
ATGAAAGAGTGAGTGGTTCTTCTTCTTCTTCTTCTTCAAGGAAAGGGAAG
AAGAACAATCAAGAGAAGCCAAAGCAACCACAGAGAGGATTAGGAGTTGC
TCAATTGGAGAAAATCAGATTACATGGCCAAATGGGTTGTGGTGGTGCTT
ATCATCCTCCTCTGCACGCTCCTTACCCTTCTAACTTCACCAATGTAAGA
CCCTTTTTTCTTCTCTCTCAAAAACTCTCAAAAACTGCCACTCTTTTTGG
CTTGGATTCGGAGGGTTTTGTTCATTGATCCTGGTCAACATGCAGGAAGA
TCCAACGCTGCAAACACCCTATTCATCGCTACCATCTTCATCATCTTTTT
CTTACTCCTCTTCATCTACCTCGTACTCAGCTTCCTATGGCTTTCAACAC
AACATTGTGGTATGTATGTGTATAGTTTTTGCCTTTTCTTCAACCGATCC
CAATTCATTTTACACTTAGCTTTATTTGTTCACATGTGTTTAACTTATTC
CTTTTCGGTTTTCTTTTCTCTTTTATCAGTGAACATCTTCCACTACTACA
GCCACACACACTTTTTCATAATTTTCAGTAACTACTACAGAAAACAAATA
GATATATGTCAAATTGTCCCCAAAGCAATTTGATCAAGATGCTTTATTTC
TCTAATTACCATTGCATAACCCTAGCAATCTTCCCTTTGAATCTGAATTA
ATTTTCTCCTTATATATATATATATATATATGTTTGGTTGAATATGACAG
TGCAAGGTTAGTGGTAATTAGGGTTGTGTAGATGTGTAGTTGTGTAGTTG
TGTGGTTGTGTTGGGGTGTTCTGCTAATTGAAAAGCATCTGGGGCTACAA
AAAGTTATCAGAAGAACCAAAAAAATGTCATTCAAACAAAATCATCTTTG
TCGTTACAGTTTTGCTGATTACTTTCACATCTAATGTTGTACAAGTAATA
ATTCTTCTGCTGCTTCCAACATGTCCATGTGAGAGTGTAGTAGTAACACA
CAAACATATACATATATATATATATAAATGTTGAAAGAGTGAGTTTGGAT
CGTGGATCTTGAAATTGGACAACACTGTTTTTTGTCTCTGCAGATGTCCC
TACCCGAGTATGAAAGAACAAGCATTAGATATGGAGATTCTCAGCCAACT
AATACTGCAAGGTACTTCAACTTTTCAAACCTATTATATAGACCCTTTTG
ATTCATATGACTAAACTGCAAATGTTGTTGGATTTTTGTTCTATTCTTTT
TTATTACTTGAAGAATTTCTAGACTATATGTTAAACTGTTTGTTGCAAAA
CCAGATGGGAACATGGCAATTCCACTGCTCAAACGAGACCTTTACTTAAC
CTATATGTAAGCAACATTTATATCTCATTGATATTGTAATCATAGAGAAT
CCATCATTGAATTCACAATGATCTTCATTATGGTGGTTTGGTTTGAATAA
TGATATAGGACTCACAACAACACATAGATACCAAGAAGCGTAGAAGTGGT
TCAGTGGGTGGAAGCAGTCAGAACTCTGAATCAAGTGACACTCAAGAACC
AGATTTGGAGCTAAGACTATCTCTTTGATCTGCTGCCACAGGAAAGAGTG
AAAAAATTCTAGTAATTGTAATGCTTTTGTTTACAATTATGAATTGAAAA
AGCACATGAACAAGCCAATGTGTTTGTTTTAAAGTTTCATACTCTTGTTT
CATGGAAGATATAGATATTGACTACTCTTTGCATAAAAGCAATGCAAATT
TAAACTTCTCTTTTAACGTAAATCATCAAAGAAACTCAAGAGAAGTTCTT
TTTCTGATAGCTATAGCTCTTATTTTATTTGATTTTTGTTTCTCTTAGTT
TGGAATCTTTCATGAATTCAAGGCTCCATATGTGACAAATGCTACTGAAA
TGATCATGAAAAGATCATACGG back to topCoding sequence (CDS) from alignment at Vu04:775892..778013- >Vigun04g010400.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g010400.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g010400.1; organism=Vigna unguiculata; type=CDS; length=585bp; location=Sequence derived from: Vu04:775892..778013- (Vigna unguiculata
ATGGATGGAAGTTATTTCGGAGAAGCAAACATGGGAAATGAAAGAGTGAG
TGGTTCTTCTTCTTCTTCTTCTTCAAGGAAAGGGAAGAAGAACAATCAAG
AGAAGCCAAAGCAACCACAGAGAGGATTAGGAGTTGCTCAATTGGAGAAA
ATCAGATTACATGGCCAAATGGGTTGTGGTGGTGCTTATCATCCTCCTCT
GCACGCTCCTTACCCTTCTAACTTCACCAATGAAGATCCAACGCTGCAAA
CACCCTATTCATCGCTACCATCTTCATCATCTTTTTCTTACTCCTCTTCA
TCTACCTCGTACTCAGCTTCCTATGGCTTTCAACACAACATTGTGATGTC
CCTACCCGAGTATGAAAGAACAAGCATTAGATATGGAGATTCTCAGCCAA
CTAATACTGCAAGATGGGAACATGGCAATTCCACTGCTCAAACGAGACCT
TTACTTAACCTATATGACTCACAACAACACATAGATACCAAGAAGCGTAG
AAGTGGTTCAGTGGGTGGAAGCAGTCAGAACTCTGAATCAAGTGACACTC
AAGAACCAGATTTGGAGCTAAGACTATCTCTTTGA back to top
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