Vigun04g014800.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun04g014800.1 vs. DB:Swiss
Match: NYC1_ORYSJ (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NYC1 PE=1 SV=1) HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0 Identity = 335/477 (70.23%), Postives = 393/477 (82.39%), Query Frame = 1 Query: 127 RFSVRECRAFRTE--DGGDAKEKKSRNLKKNEVNSKRESGFW---SSLQSILLRNFMVGSKSDDEYRQAVVKVEGLLSSIAIQIGRYIVTMMSTGVILSIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANMVLEEHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSLESVQATVKELEENLKEGIANSVGSSLTKLSHAKVVGIACDVCEPHDVQRLADFAVKELGYVDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDLLLSGSTVQNRQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRLRNWAEDRARFSFTDAMEMYTENTLLPVFSLSVVCAFIILSSTGNNMPGT 1542 R S+ CRAF+ E +GG+ E +R+ + +++Q + EY++AV K E + S+A Q+GRY++TMMS+GV+L +GFQ+SGGDSQM+ LIWYSWLGGVIIGTMIGAN VLEEHC+AGPRNVVITGSTRGLGKALAREFLLSGDRV++ SRS ESV T+ ELEEN++EG++ + L HAKVVG +CDVC+P DV++L +FA ELG +DIWINNAGTNKGFRPL+ FSDEDI QIVSTNLVGS+LCTREAM VM++Q GH+FNMDGAGSGGSSTPLTAVYGSTKCGLRQ Q SLLKE +RSKVGVHTASPGMVLTDLLLSGS+++N+QMFN+ICELPETVARTLVPRMRVVKG+GKAINYLTPPRILLALVTAW+RRGRWFD++GRA+YAAEADR+RNWAE RARFSFTDAMEMYTENT + VFSLSVVCAFIILSS+G +PGT Sbjct: 28 RPSLLRCRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYKLKAAIQGLAGSRSAAAEAYGGEYQRAVEKAEEIFFSVATQVGRYVITMMSSGVVLGVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANSVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVIASRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVGTSCDVCKPEDVKKLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGSLLCTREAMNVMQHQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQFQASLLKESRRSKVGVHTASPGMVLTDLLLSGSSLRNKQMFNLICELPETVARTLVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSGGPLPGT 504
BLAST of Vigun04g014800.1 vs. DB:Swiss
Match: NYC1_ARATH (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NYC1 PE=1 SV=1) HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0 Identity = 354/519 (68.21%), Postives = 413/519 (79.58%), Query Frame = 1 Query: 1 MATVVKLHVFPDSLNRHKTRFFRRGFGSCPSPGVLGFGHDC----DRFSVRECRAFRTEDGGDAKEKKSRNLKKNEVNSKRESGFWSSLQSILLRNFMVGSKSDDEYRQAVVKVEGLLSSIAIQIGRYIVTMMSTGVILSIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANMVLEEHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSLESVQATVKELEENLKEGIANSVGSSLTKLSHAKVVGIACDVCEPHDVQRLADFAVKELGYVDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDLLLSGSTVQNRQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRLRNWAEDRARFSFTDAMEMYTENTLLPVFSLSVVCAFIIL-SSTGNNMPGT 1542 M T+ K+ V+P L H+ FFR P +G C +R V C EKK +K +V + +G W SL+S L +G S DEY Q V +E + SS+A+QI RYIVTM STG IL IGFQ+SGGDS M++L+WYSWLGG+IIGTM GANMVLE+H RAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRS ESV TVKELE+NLKE ++N+ S+ KLS AKVVGIACDVC+P DV++L++FAVKELG ++IWINNAGTNKGFRPLL+F++EDI QIVSTNL+GSILCTR AM VM Q + GHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ GS++KE +++ VG+HTASPGMVLT+LLLSGS+++N+QMFNIICELPETVARTLVPRMRVVKG+GKA+NYLTPPRILLA+VT+WLRRGRWFDDQGRALYAAEADRLRNWAE+R R S TDAMEMYTENT + VFSLSVVCAFIIL S+T ++ PGT Sbjct: 1 MTTLTKIQVYPQVL-EHRL-FFR-------DPIRVGSRLTCRERSNRVYVHRC------------EKKVE--RKRKVEKFKGNGSWDSLKSGFLGFSKLGFLSKDEYNQKVENLEMVFSSVAVQIARYIVTMTSTGAILLIGFQLSGGDSSMNSLVWYSWLGGIIIGTMTGANMVLEDHYRAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSSESVDMTVKELEQNLKEIMSNASESARKKLSDAKVVGIACDVCKPEDVEKLSNFAVKELGSINIWINNAGTNKGFRPLLEFTEEDITQIVSTNLIGSILCTRGAMDVMSRQHSGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSIVKESQKTNVGLHTASPGMVLTELLLSGSSIKNKQMFNIICELPETVARTLVPRMRVVKGSGKAVNYLTPPRILLAIVTSWLRRGRWFDDQGRALYAAEADRLRNWAENRTRLSLTDAMEMYTENTWVSVFSLSVVCAFIILQSTTPSSFPGT 496
BLAST of Vigun04g014800.1 vs. DB:Swiss
Match: NOL_ARATH (Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NOL PE=1 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 2.530e-64 Identity = 116/250 (46.40%), Postives = 153/250 (61.20%), Query Frame = 1 Query: 538 PRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSLESVQATVKELEENLKEGIANSVGSSLTKLSHAKVVGIACDVCEPHDVQRLADFAVKELGYVDIWINNAGTNK-GFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVG---VHTASPGMVLTDLLLSGSTVQNRQMF-NIICELPETVARTLVPRMRVVKGTG 1272 P N++ITGST+G+G ALAREFL +GD V++ SRS E V+ V+ L+E E V G CDV E DV+ L ++ K L Y+DIWINNAG+N F+PL + SDED+ ++V TN +G +LC REAM +M Q+ GHIFN+DGAGS G TP A YG+TK + L SL E + V VH SPGMV TDLL+SG+T + + F N++ E E VA LVP +R + +G Sbjct: 79 PYNILITGSTKGIGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEFGE----------------HVWGTKCDVTEGKDVRELVAYSQKNLKYIDIWINNAGSNAYSFKPLAEASDEDLIEVVKTNTLGLMLCCREAMNMMLTQSRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEYLVPNIRAIPASG 312
BLAST of Vigun04g014800.1 vs. DB:Swiss
Match: NOL_ORYSJ (Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NOL PE=1 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 1.478e-63 Identity = 113/246 (45.93%), Postives = 157/246 (63.82%), Query Frame = 1 Query: 538 PRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSLESVQATVKELEENLKEGIANSVGSSLTKLSHAKVVGIACDVCEPHDVQRLADFAVKELGYVDIWINNAGTNK-GFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVG---VHTASPGMVLTDLLLSGSTVQNRQMF-NIICELPETVARTLVPRMRVV 1260 P NV+ITGST+G+G ALA+EFL +GD V++ SRS E V++ V +L++ E V GI CDV E DV+ L DFA ++ Y+DIWINNAG+N ++PL++ SDE + ++++TN +G ++C REA+ +MRNQ GHIFN+DGAGS G TP A YG+TK + L SL E + ++V VH SPGMV TDLL+SG+T + + F NI+ E VA LVP +R + Sbjct: 73 PYNVLITGSTKGIGYALAKEFLKAGDNVVICSRSAERVESAVTDLKKEFGE---------------QHVWGIVCDVREGKDVKALVDFARDKMKYIDIWINNAGSNAYSYKPLVETSDEALMEVITTNTLGLMICCREAINMMRNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMNEVNNVMVHNLSPGMVTTDLLMSGATTKQAKFFINILAEPANVVADYLVPNIRAI 303
BLAST of Vigun04g014800.1 vs. DB:Swiss
Match: CBR4_HUMAN (Carbonyl reductase family member 4 OS=Homo sapiens OX=9606 GN=CBR4 PE=1 SV=3) HSP 1 Score: 87.4261 bits (215), Expect = 3.013e-18 Identity = 66/202 (32.67%), Postives = 100/202 (49.50%), Query Frame = 1 Query: 553 ITGSTRGLGKALAREFLLSGDRVIVTSRSLESVQATVKELEENLKEGIANSVGSSLTKLSHAKVVGIACDVCEPHDVQRLADFAVKELGYVDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDL 1158 + G +RG+G+A+A+ G R+ V +R+LE +A +L G L +CDV + HDVQ + K LG V+ +N AG N+ L++ ED+ + TNL+GS+L + AMR M Q G I N+ G+ G +VY ++K GL +L KE R K+ V+ +PG V TD+ Sbjct: 7 VFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAGDLG-----------GDHLA---------FSCDVAKEHDVQNTFEELEKHLGRVNFLVNAAGINRD-GLLVRTKTEDMVSQLHTNLLGSMLTCKAAMRTMIQQ-QGGSIVNV-GSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDM 185
BLAST of Vigun04g014800.1 vs. DB:Swiss
Match: CBR4_BOVIN (Carbonyl reductase family member 4 OS=Bos taurus OX=9913 GN=CBR4 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.667e-18 Identity = 63/202 (31.19%), Postives = 102/202 (50.50%), Query Frame = 1 Query: 553 ITGSTRGLGKALAREFLLSGDRVIVTSRSLESVQATVKELEENLKEGIANSVGSSLTKLSHAKVVGIACDVCEPHDVQRLADFAVKELGYVDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDL 1158 + G +RG+G+A+AR G R+ + +R+LE +A +L G L ++CDV + HDVQ + K LG V+ +N AG N+ L++ + ED+ + TNL+GS+L R A++ M Q G I N+ G+ G +VY ++K GL +L KE + K+ V+ +PG + TD+ Sbjct: 7 VFGGSRGIGRAVARLMAQRGYRLAIVARNLEGARAAAGDLG-----------GDHLA---------LSCDVAKEHDVQNTFEEIEKNLGRVNFLVNAAGINRD-NLLVRTNTEDMLSQLHTNLLGSMLTCRAALKTMIKQQR-GSIVNV-GSVVGLKGNSGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPGFIHTDM 185
BLAST of Vigun04g014800.1 vs. DB:Swiss
Match: DHGB_BACME (Glucose 1-dehydrogenase B OS=Bacillus megaterium OX=1404 GN=gdhB PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.298e-17 Identity = 62/204 (30.39%), Postives = 92/204 (45.10%), Query Frame = 1 Query: 547 VVITGSTRGLGKALAREFLLSGDRVIVTSRSLESVQATVKELEENLKEGIANSVGSSLTKLSHAKVVGIACDVCEPHDVQRLADFAVKELGYVDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDL 1158 VVITGS+ GLGK++A F +V+V RS KE ANSV K + + + DV DV L A+KE G +D+ INNAG + S D +++ TNL G+ L +REA++ G + NM PL Y ++K G++ + +L E + V+ PG + T + Sbjct: 10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRS---------------KEDEANSVLEEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGMENPVSSH-EMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEWKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI 197
BLAST of Vigun04g014800.1 vs. DB:Swiss
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium OX=1404 GN=gdhII PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.151e-17 Identity = 62/205 (30.24%), Postives = 98/205 (47.80%), Query Frame = 1 Query: 547 VVITGSTRGLGKALAREFLLSGDRVIVTSRSLESVQATVK-ELEENLKEGIANSVGSSLTKLSHAKVVGIACDVCEPHDVQRLADFAVKELGYVDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDL 1158 VV+TG ++GLG+A+A F +V+V RS E VK E+EE + + + + DV + DV L + AVKE G +D+ INNAG P + S E+ Q++ TNL G+ L +REA++ G++ NM PL Y ++K G++ + +L E + V+ PG + T + Sbjct: 10 VVVTGGSKGLGRAMAVRFGQEQSKVVVNYRSNEEEALEVKKEIEE-----------------AGGQAIIVRGDVTKEEDVVNLVETAVKEFGSLDVMINNAGVENPV-PSHELSLENWNQVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHE-MIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIDTPI 195
BLAST of Vigun04g014800.1 vs. DB:Swiss
Match: CBR4_MOUSE (Carbonyl reductase family member 4 OS=Mus musculus OX=10090 GN=Cbr4 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 4.861e-17 Identity = 66/206 (32.04%), Postives = 97/206 (47.09%), Query Frame = 1 Query: 553 ITGSTRGLGKALAREFLLSGDRVIVTSRSLESVQATVKELEENLKEGIANSVGSSLTKLSHAKVVGIACDVCEPHDVQRLADFAVKELGYVDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQA----NAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDL 1158 + G +RG+G+A+A+ G R+ + SR+LE + T EL N H + CDV + DVQ K LG V+ +N AG N+ L++ ED+ + TNL+GS+L + AM+ M Q N G I + G + G S Y +TK GL SL KE R K+ V+ +PG + TD+ Sbjct: 7 VFGGSRGIGRAVAQLMAQKGYRLAIVSRNLEVAKVTAGELGGN-----------------H---LAFRCDVAKEQDVQSTFQEMEKHLGPVNFLVNAAGINRD-SLLVRTKTEDMISQLHTNLLGSMLTCKAAMKTMIQQGGSIVNVGSIIGLKG--NVGQSA-----YSATKGGLVGFSRSLAKEVARKKIRVNVVAPGFIRTDM 184
BLAST of Vigun04g014800.1 vs. DB:Swiss
Match: CBR4_DANRE (Carbonyl reductase family member 4 OS=Danio rerio OX=7955 GN=cbr4 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.994e-17 Identity = 62/206 (30.10%), Postives = 105/206 (50.97%), Query Frame = 1 Query: 541 RNVVITGSTRGLGKALAREFLLSGDRVIVTSRSLESVQATVKELEENLKEGIANSVGSSLTKLSHAKVVGIACDVCEPHDVQRLADFAVKELGYVDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDL 1158 R V+ G +RG+G+A ++ G R+++ SR+ E+ Q+T + SL +H +G++CDV + +VQ+ + K G V +N AG N+ LL+ ED+ ++ TNL+GS+L + A+R M ++ G I N+ G+ G VY ++K GL SL KE + V+ +PG++ TD+ Sbjct: 3 RLAVVFGGSRGIGRAASKLLAQRGHRIVLLSRNKEAAQSTAQ----------------SLPGENH---LGLSCDVSKEEEVQKAFETINKTCGTVGFLVNAAGINRD-ALLLRSKSEDMLSVLHTNLLGSMLTCKAAVRNML--SHGGAIVNI-GSVVGVKGNAGQCVYSASKAGLEGFTRSLAKEVASRNIRVNLVAPGLIHTDM 185 The following BLAST results are available for this feature:
BLAST of Vigun04g014800.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun04g014800.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g014800.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g014800.1; organism=Vigna unguiculata; type=mRNA; length=2245bpback to top protein sequence of Vigun04g014800.1_Vu_IT97K-499-35_v1.1 >Vigun04g014800.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g014800.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g014800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=515bpback to top mRNA from alignment at Vu04:1077793..1081497- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun04g014800.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g014800.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g014800.1; organism=Vigna unguiculata; type=mRNA; length=3705bp; location=Sequence derived from: Vu04:1077793..1081497- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu04:1077793..1081497- >Vigun04g014800.1_Vu_IT97K-499-35_v1.1 ID=Vigun04g014800.1_Vu_IT97K-499-35_v1.1; Name=Vigun04g014800.1; organism=Vigna unguiculata; type=CDS; length=1545bp; location=Sequence derived from: Vu04:1077793..1081497- (Vigna unguiculataback to top |