Vigun05g203300.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun05g203300.1 vs. DB:Swiss
Match: HS217_ARATH (21.7 kDa class VI heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP21.7 PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 4.883e-71 Identity = 107/185 (57.84%), Postives = 136/185 (73.51%), Query Frame = 1
Query: 1 MTSSNK--RLEVQTEDQTPHKWCVSLGEEPFKRFFSQTNPTLHKVFGDGSLFSPLLFGKFFDPSDAFPLWEFESDVLLSHLRSSSQSTVDWCQTGEGYILKAEIPGTGKNNIQVVVD-KGKVVEISGAWKQQRDSKAH-DWRCGHWWEHGYVRRLEMPEDADWKNIEAYIHND---IYLEIRIPK 534
MTSS+ +LE+ T+D+TP KW V LG++ F+RF S + VFG+GSLFSP LFGK+FDPSDAFPLWEFE++VLL+ LRS Q VDW QT + Y+LK++IP GKNN+QV VD G+V+EISG W + + + DWR G WWEHGYVRRLE+P DAD K EA++ N+ +LEIRIPK
Sbjct: 1 MTSSSGSLKLEIHTDDKTPGKWSVPLGDDVFRRFLSGGGGSEKAVFGEGSLFSPFLFGKYFDPSDAFPLWEFEAEVLLASLRSLGQCRVDWSQTDQAYVLKSDIPVVGKNNVQVYVDINGRVMEISGQWNSNKKAATNSDWRSGRWWEHGYVRRLELPSDADAKYSEAFLSNNDDYSFLEIRIPK 185
BLAST of Vigun05g203300.1 vs. DB:Swiss
Match: HS223_ORYSJ (22.3 kDa class VI heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP22.3 PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.921e-51 Identity = 84/178 (47.19%), Postives = 114/178 (64.04%), Query Frame = 1
Query: 40 DQTPHKWCVSLGEEPFKRFFSQTNPTLHK-------VFGDGSLFSPLLFGKFFDPSDAFPLWEFESDVLLSHLRSSSQSTVDWCQTGEGYILKAEIPGTGKNNIQVVVDKG-KVVEISGAWKQQRDSK---AHDWRCGHWWEHGYVRRLEMPEDADWKNIEAYIHN-DIYLEIRIPKS 537
D +W +SL E F F + VFG+GSLFSP LFGKFFDP+DAFPLWEFE +VLL+ LR +++TVDW +T Y L+A+IPG K +++V D +VV++SG W+ DWR G WWEHG+VRR+E+PEDADW+ +EA+ + + LEI++PKS
Sbjct: 15 DGAAPRWRMSLLENTFSSFLQSIGGGVAADGAAARAVFGEGSLFSPFLFGKFFDPADAFPLWEFEPEVLLAALRRGARTTVDWAETDSEYYLRADIPGGRKCDVEVSGDDAMRVVDVSGLWRAAPPPPPPDGRDWRAGRWWEHGFVRRVELPEDADWRKVEAFFDDGEGLLEIKVPKS 192
BLAST of Vigun05g203300.1 vs. DB:Swiss
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP17.7 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 5.385e-13 Identity = 40/142 (28.17%), Postives = 72/142 (50.70%), Query Frame = 1
Query: 139 GSLFSPLLFGKFFDPSDAFPLWEFESDVLLSHL--RSSSQST------VDWCQTGEGYILKAEIPGTGKNNIQVVVDKGKVVEISGAWKQQRDSKAHDWRCGHWWEHGYVRRLEMPEDADWKNIEAYIHNDIYLEIRIPKSQ 540
G+ F P +DP D FP S L R++S + +DW +T E ++ KA++PG K ++V VD G +++ISG ++++ K+ W ++RR +PE+ + I+A + N + L + +PK +
Sbjct: 7 GNAFDPFSLD-LWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGV-LTVTVPKEE 146
BLAST of Vigun05g203300.1 vs. DB:Swiss
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6C PE=2 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 1.267e-12 Identity = 35/131 (26.72%), Postives = 66/131 (50.38%), Query Frame = 1
Query: 142 SLFSPLLFGKFFDPSDAFPLWEFESDVLLSHLRSSSQSTVDWCQTGEGYILKAEIPGTGKNNIQVVVDKGKVVEISGAWKQQRDSKAHDWRCGHWWEHGYVRRLEMPEDADWKNIEAYIHNDIYLEIRIPK 534
++F P FDP + F ++ + + + + VDW +T E ++ KA++PG K ++V V+ G +++ISG + + K W + RR +PE+A + I+A + N + L + +PK
Sbjct: 14 NVFDPFSL-DVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGV-LSVTVPK 142
BLAST of Vigun05g203300.1 vs. DB:Swiss
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP18.5-C PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 2.995e-12 Identity = 34/119 (28.57%), Postives = 64/119 (53.78%), Query Frame = 1
Query: 184 SDAFPLWEFESDVLLSHLRSSSQSTVDWCQTGEGYILKAEIPGTGKNNIQVVVDKGKVVEISGAWKQQRDSKAHDWRCGHWWEHGYVRRLEMPEDADWKNIEAYIHNDIYLEIRIPKSQ 540
S +FP + E+ +S + VDW +T E ++ KA+IPG K ++V ++ KV++ISG +++ K W ++RR +PE+A + ++A + N + L + +PK +
Sbjct: 38 SASFPEFSRENSAFVS-------TRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGV-LTVTVPKEE 148
BLAST of Vigun05g203300.1 vs. DB:Swiss
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP17.9A PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 5.701e-12 Identity = 28/96 (29.17%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 253 STVDWCQTGEGYILKAEIPGTGKNNIQVVVDKGKVVEISGAWKQQRDSKAHDWRCGHWWEHGYVRRLEMPEDADWKNIEAYIHNDIYLEIRIPKSQ 540
+ +DW +T E ++ KA++PG K ++V VD G +++ISG ++++ K W ++RR +P++A + I+A + N + L + +PK +
Sbjct: 54 ARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGV-LTVTVPKEE 148
BLAST of Vigun05g203300.1 vs. DB:Swiss
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.6-L PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 8.437e-12 Identity = 42/142 (29.58%), Postives = 73/142 (51.41%), Query Frame = 1
Query: 154 PLLFG----KFFDPSDAFPLWEFESDVLLSHLRSSSQST---------VDWCQTGEGYILKAEIPGTGKNNIQVVVDKGKVVEISGAWKQQRDSKAHDWRCGHWWEHGYVRRLEMPEDADWKNIEAYIHNDIYLEIRIPKSQ 540
P +FG FDP + +W+ D H+ +SS S VDW +T E ++LKA+IPG K ++V ++ +V++ISG +++ K W ++RR +PE+A + ++A + N + L + IPK +
Sbjct: 5 PSIFGGPRSNVFDPF-SLDMWDPFKDF---HVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGV-LTVTIPKEE 141
BLAST of Vigun05g203300.1 vs. DB:Swiss
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.3-B PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.177e-11 Identity = 43/134 (32.09%), Postives = 69/134 (51.49%), Query Frame = 1
Query: 142 SLFSPLLFGKFFDPSDAFPLWEFESDVLLSHLRSSSQST-VDWCQTGEGYILKAEIPGTGKNNIQVVVDKGKVVEISGAWKQQRDSKAHDWRCGHWWEHGYVRRLEMPEDADWKNIEAYIHNDIYLEIRIPKSQ 540
S+F P +DP FP F S LS S+ ST VDW +T E ++ KA+IPG K +++ + G+V++ISG +++ K W VRR +PE+A ++A + N + L + +PK +
Sbjct: 14 SVFDPFSLD-VWDPFKDFP---FPSS--LSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGV-LTVTVPKEE 140
BLAST of Vigun05g203300.1 vs. DB:Swiss
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa OX=3879 GN=HSP18.2 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 3.198e-11 Identity = 34/122 (27.87%), Postives = 61/122 (50.00%), Query Frame = 1
Query: 178 DPSDAFPLWEFESDVLLSHLRSSSQST-VDWCQTGEGYILKAEIPGTGKNNIQVVVDKGKVVEISGAWKQQRDSKAHDWRCGHWWEHGYVRRLEMPEDADWKNIEAYIHNDIYLEIRIPKSQ 540
DP FP S+ ST VDW +T E ++ KA++PG K ++V ++ +V++ISG +++ K W ++RR +PE+A ++A + N + L + +PK +
Sbjct: 25 DPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGV-LTVTVPKEE 145
BLAST of Vigun05g203300.1 vs. DB:Swiss
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP17.5-M PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 4.045e-11 Identity = 39/137 (28.47%), Postives = 70/137 (51.09%), Query Frame = 1
Query: 154 PLLFG----KFFDPSDAF---PLWEFESDVLLSHLRSSSQST-VDWCQTGEGYILKAEIPGTGKNNIQVVVDKGKVVEISGAWKQQRDSKAHDWRCGHWWEHGYVRRLEMPEDADWKNIEAYIHNDIYLEIRIPKSQ 540
P +FG FDP P +F LS S+ +T VDW +T E ++ +A+IPG K ++V ++ +V++ISG +++ K W ++RR +PE+A + ++A + N + L + +PK +
Sbjct: 5 PSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGV-LTVTVPKEE 140 The following BLAST results are available for this feature:
BLAST of Vigun05g203300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun05g203300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g203300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g203300.1; organism=Vigna unguiculata; type=mRNA; length=1459bpback to top protein sequence of Vigun05g203300.1_Vu_IT97K-499-35_v1.1 >Vigun05g203300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g203300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g203300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=193bpback to top mRNA from alignment at Vu05:39183664..39185796+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun05g203300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g203300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g203300.1; organism=Vigna unguiculata; type=mRNA; length=2133bp; location=Sequence derived from: Vu05:39183664..39185796+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu05:39183664..39185796+ >Vigun05g203300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g203300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g203300.1; organism=Vigna unguiculata; type=CDS; length=579bp; location=Sequence derived from: Vu05:39183664..39185796+ (Vigna unguiculataback to top |