Transcript Overview
Name Vigun05g209600.1 Unique Name Vigun05g209600.1_Vu_IT97K-499-35_v1.1 Type mRNA Organism Vigna unguiculata (cowpea) Sequence length 1818
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun05g209600.1 Vigun05g209600.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun05g209600.1_Vu_IT97K-499-35_v1.1 Vigun05g209600.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun05g209600.1.v1.1.five_prime_UTR.1 Vigun05g209600.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun05g209600.1.v1.1.CDS.1 Vigun05g209600.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun05g209600.1.v1.1.CDS.2 Vigun05g209600.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun05g209600.1.v1.1.three_prime_UTR.1 Vigun05g209600.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
Homology
BLAST of Vigun05g209600.1 vs. DB:Swiss
Match:
SBP65_SOYBN (Seed biotin-containing protein SBP65 OS=Glycine max OX=3847 GN=SBP65 PE=2 SV=1)
HSP 1 Score: 421.779 bits (1083), Expect = 2.632e-140
Identity = 303/469 (64.61%), Postives = 343/469 (73.13%), Query Frame = 1
Query: 109 MASQQLAXXXXXXXXXX---XXXXVPKMATHFENLS----------GKEPPQ----ALQGGNQVKERAGKATGDVGGRGKVIETQGLGAQFESLADKVKISDHAANXXXXXXXXXXXXX---XXXXKFEMKTEGGGRGNKDREKLETRTREVKGRTQ--RGRKNEGQVVAEKGRGSEL----------GANATAAIASTLEQGDSNTRKP----RXXXXXXXXTLEQVD------SKDLKKRYEKAKQAASETLNSTVQ-----------VATQAKDAAVEKGQQGCAITKDTIXXXXXXXXEKTAPVAEKAKGYTFQVAEKAKSAGGTTASYVGEKAVQAKDVAVEGGKTAAGYAAKVAGDLKDRAPVVGWAAAQFSTEMTVEGTKAVAHVVEGAAGYAGQKAAELASKSVGAVKCLAASAGESAKGYTARKKEEAQRELEAKRASQPQLAEERQSEGMGETVIQNAE 1356
MAS+QLARRENTT E+ EK VPKMATHFE+L+ GK+ PQ ALQ G +VK+ AGKA GD+GGRGK ET LGA FESLADKV +DHAA V + R RDVGKFEM+TEGG +GNKDR +L+TRTREV GRT+ RGR++ GQVVAEKGR +E GA TA I TLE+G T+KP ESESE+S EQ+ ++ +K++YE+AKQAASETLN+T Q +A QAKDA +EKGQQG A+TKDTISSAAK ASEKTAPVAEKAK YT Q AEKAKSAGGTTASYVGEKAVQAKDVAVE GK+AAGYAAKVA DL+D+A VGWAAA FS E TVEGTKA AHVVEGAAGYAG KAAELAS S GAVK LAASAGE+AK YTA+KKEEAQRELEAK+ SQPQ AEER SEG+GETV Q A+
Sbjct: 1 MASEQLARRENTTTEKEIHVEKHRVPKMATHFEHLAEQAKESDITAGKDTPQGSIEALQAGERVKDHAGKAMGDIGGRGKARETHELGAHFESLADKV--TDHAAANVVGNKESQREARGGVRDVGKFEMRTEGGEKGNKDRPELKTRTREVIGRTEKERGRESGGQVVAEKGRETETARGRVGAENEGARTTAVITCTLEKG-GGTQKPIREEERESESERSAWEQISNYSDQATQGVKEKYERAKQAASETLNTTTQTAQEKSAQAKNLAAQAKDATLEKGQQGYAVTKDTISSAAKTASEKTAPVAEKAKDYTLQAAEKAKSAGGTTASYVGEKAVQAKDVAVESGKSAAGYAAKVAADLRDKATAVGWAAAHFSAEKTVEGTKAAAHVVEGAAGYAGHKAAELASMSAGAVKGLAASAGETAKEYTAKKKEEAQRELEAKKPSQPQEAEERPSEGIGETVRQYAQ 466
BLAST of Vigun05g209600.1 vs. DB:Swiss
Match:
SBP65_PEA (Seed biotin-containing protein SBP65 OS=Pisum sativum OX=3888 GN=SBP65 PE=1 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 9.863e-46
Identity = 145/321 (45.17%), Postives = 195/321 (60.75%), Query Frame = 1
Query: 427 KFEMKTEGGGRG-NKDREKLETRTREVKGRTQ-RGRKNEGQVVAEKGRGSELGANATAAIASTLEQGDSNTRKPRXXXXXXXXTLEQVDSKDLKKRYEKAKQAASETLNSTVQVA------TQAKDAAVEKGQQGCAITKDTIXXXXXXXXEKTAPVAEKAKGYTFQVAEKAK----SAGGTTASYV---GEKA----VQAKDVAVEGGKTAAG-------YAAKVAGDLKDRAPVVGWAAAQFSTEMTVEGTKAVAHVVEGAAGYAGQKAAELASKSVGAVKCLAASAGESAKGYTARKKEEAQRELEAKRASQPQLAEE 1311
KF+M+++GG + +DRE L+TR+R V G + +GQVV E+ R E T+E+ + +++++S LE + + +++YE+AKQA +ETL +T Q A QAKDA EK QQG +T DT+S++A+ ASEK A G T Q E + +A T A Y EKA VQAKDV +E GKTAA AAKVA DLK++A V GW A+ ++T++TV+GT+A A+ VEGA GY KA+ELA+KSV VK LAASAGE+AK +TARKKEE+ RE EAKRASQ Q EE
Sbjct: 103 KFQMESKGGNKSLAEDRETLDTRSRMVTGTPHIKEASGKGQVVEERERARERAMEEEEKRL-TMEE------ISKYRNQAQQSALEALSA--AQEKYERAKQATNETLRNTTQAAQEKGEAAQAKDATFEKTQQGYEMTGDTVSNSARTASEKAAQAKNTTLGKTQQGYEATRDTVSNAARTAAEYATPAAEKARCVAVQAKDVTLETGKTAAEKAKCAAEIAAKVAVDLKEKATVAGWTASHYATQLTVDGTRAAANAVEGAVGYVAPKASELAAKSVETVKGLAASAGETAKEFTARKKEESWREYEAKRASQLQEGEE 414
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
200 400 600 800 1000 1200 1400 1600 1800 Score = Score = Score = Score = Score = Score = Score = Score = Score = Sequence Coil Coil mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 230..250 None No IPR available COILS Coil Coil coord: 417..437 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 128..184 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 65..97 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 485..505 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 209..233 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 411..434 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 410..505 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 128..233
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun05g209600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g209600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g209600.1; organism=Vigna unguiculata; type=mRNA; length=1818bp back to top protein sequence of Vigun05g209600.1_Vu_IT97K-499-35_v1.1
>Vigun05g209600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g209600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g209600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=506bp back to top mRNA from alignment at Vu05:40044091..40046186+
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun05g209600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g209600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g209600.1; organism=Vigna unguiculata; type=mRNA; length=2096bp; location=Sequence derived from: Vu05:40044091..40046186+ (Vigna unguiculataCACATGTCCTCTTCCATGCAAACCCATCACCTCCACCTCTTCTTCTTTTT
AACAAC ATGCATTCCCTTCCACACCCCCACAATCTGCATTCTACTGTCAC
ATTACACCACTTCAACAAAATTATTACTTACCAAACACAAATACACAACA
ACAACAACAACAACATGGCGTCTCAACAGTTGGCTCGAAGAGAAAACACC
ACCGCCGAGAGACGTGAGAAAGAAACGGTTCCAAAGATGGCTACCCACTT
TGAGAACCTTTCCGGGAAAGAGCCTCCGCAAGCGTTACAAGGTGGAAATC
AGGTCAAAGAGCGTGCAGGGAAAGCCACTGGGGATGTTGGTGGACGTGGG
AAAGTCATAGAGACTCAGGGGTTGGGTGCACAGTTTGAGTCCCTCGCTGA
CAAAGTGAAGATAAGTGACCATGCAGCGAATGTCGTTGGAAGCGAAGAGA
GAGAAGGTCGTGGCGGTGTTCGTGATGTTGGGAAGTTCGAAATGAAAACT
GAAGGTGGAGGAAGAGGGAACAAGGATAGAGAAAAACTGGAAACACGAAC
CAGGGAGGTTAAAGGAAGAACACAAAGAGGAAGAAAAAATGAAGGACAAG
TAGTGGCAGAGAAAGGAAGAGGATCAGAACTTGGTGCTAATGCAACCGCG
GCTATAGCTAGCACTTTGGAACAAGGTGATAGTAATACTCGGAAACCAAG
AGAAGAGAGTGAAAGTGAAAAATCTACGTTGGAACAGGTTGATTCCAAAG
ACCTGAAGAAGAGGTACGAGAAAGCGAAACAAGCAGCGAGCGAGACACTG
AACAGTACAGTTCAAGTTGCAACACAAGCGAAGGACGCAGCGGTTGAGAA
GGGTCAACAAGGCTGTGCTATAACCAAAGACACCATTTCAAGTGCCGCGA
AAGCCGCTTCGGAAAAAACTGCGCCGGTGGCAGAGAAGGCCAAAGGGTAC
ACATTTCAAGTGGCGGAGAAGGCCAAGAGTGCGGGTGGCACGACAGCGAG
TTACGTCGGGGAGAAAGCGGTTCAAGCGAAGGATGTTGCCGTGGAAGGTG
GGAAGACTGCGGCGGGGTATGCTGCGAAGGTGGCTGGGGATTTGAAGGAC
AGGGCGCCGGTGGTGGGGTGGGCGGCGGCACAATTTTCGACGGAGATGAC
GGTGGAGGGGACGAAGGCCGTGGCCCATGTGGTTGAGGGGGCGGCGGGGT
ATGCGGGGCAAAAGGCAGCTGAACTTGCTTCAAAGTCGGTAGGTGCTGTC
AAATGTTTGGCTGCTTCAGCTGGTGAATCTGCTAAGGGATACACTGCAAG
GAAGAAAGAAGAGGCACAGAGGGAATTGGAGGCCAAAAGAGCATCCCAAC
CTCAG GTTCATTCAATATAGTCACTCTTATACTCTTTATATCATCCTAAA
ATCTAACTCAGCCTAAAAAAAAACAGTTTTTATCTTGTCAGGTTCTCCTT
AATCATATACGTATGACCAGATACTGTTTCTGACAATTTTTGTGATATTC
TCATTCAATAAAAAATACTTTTTTACATAAATTATGTTAGTTTTGTGTAC
TTGTGGAGGTAGGAGTGTAAGAAAAATGTGTTTCAATTAGCCTTTTGGAA
GACTGTGTACTGAGAATTGGTACTCTGATTTAGTTAGCTGAAGAGAGGCA
ATCAGAAGGAATGGGCGAAACTGTAATCCAGAATGCAGAAAATGCAGAAA
AGCCGAAGGAAGGTGGGGGAAGCGATGTTGGGTCGAAGGTGAAGAAACCA
TTTGATGGAGGAGGGACCAAAGAAGAAGGAAAGGGTGTGACTGGTCAAAC
ATTGAAAAACACTGATGAGAAGTTGGGTGATGCCAACATCACTGGTAACT
GA TCGTGCCAAACACGATGAAGGGTCACAGAGTGCTTGAGTTGAGCTGAG
TCTACGTCAGCCATTGTGTTTTAAGGTTTAGTTTTATGCCATACTTGGTT
TCTGTAATTTCCATGTTTTGGGTTTGTTCTACGGGTTTTTGTCACTGTAT
AAGAACTGTTTGTAAACAATGCGTGTGGCTTCCTAAGCATGCAGAATAAC
GTGCTACAAAAATACTAAATTTGAGTTCTCCAAATATCGTTCATAC back to top Coding sequence (CDS) from alignment at Vu05:40044091..40046186+
>Vigun05g209600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g209600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g209600.1; organism=Vigna unguiculata; type=CDS; length=1518bp; location=Sequence derived from: Vu05:40044091..40046186+ (Vigna unguiculata back to top
