Vigun05g215100.1

Transcript Overview
NameVigun05g215100.1
Unique NameVigun05g215100.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length933
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu05supercontigVu05:40712513..40713445 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL094Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuR322Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL057Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL178Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL495Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL179Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL493Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL530Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL039Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL047Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL518Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL536Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0406Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1052Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0274Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0531Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0566Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0736Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1056Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1110Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1115Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL117Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL124Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL161Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL594Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR363Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR398Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR411Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL064Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL060Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL189Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL161Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuL694Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vssvuL102Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL113Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL252Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR261Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR275Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR279Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL038Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL047Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL485Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL059Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL065Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL093Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL227Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL515Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL043Cicer arietinum
carvuL047Cicer arietinum
carvuL489Cicer arietinum
ccavuL099Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL387Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL389Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL589Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR413Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR480Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR483Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR494Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR411Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR425Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR456Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR461Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL409Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL470Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL523Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL061Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL425Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL486Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL489Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL529Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL158Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL237Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL422Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL460Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR318Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR337Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR346Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Cr_05001.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Phvul.011G119000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigst.06G129800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-KK1_033957Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_24003.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
LR48_mrnaVigan08g114500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.07G097700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-TanjilR_16137Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigst.07G073900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
evm.model.Chr05.2064Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_024764Cajanus cajan Asha genome v1.0Cajanus cajan
jg8347.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat07G0380400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigan.06G132100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
LR48_mrnaVigan05g148800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Va08G051470.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_11704Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
XM_058874395.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_07G00788.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_03041Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va05G043640.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr11.1009Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_11240Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_06G00867.1Vigna umbellata FF25 genome v1.0Vigna umbellata
PvulFLAVERTChr11.714Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_004505519.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cc_v2.0_09765.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun11g103400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun11g103400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun05g215100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun05g215100Vigun05g215100_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g215100.1Vigun05g215100.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun05g215100.1_Vu_IT97K-499-35_v1.1Vigun05g215100.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g215100.1.v1.1.five_prime_UTR.1Vigun05g215100.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g215100.1.v1.1.CDS.1Vigun05g215100.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g215100.1.v1.1.three_prime_UTR.1Vigun05g215100.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun05g215100.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun05g215100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g215100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g215100.1; organism=Vigna unguiculata; type=mRNA; length=933bp
TAGGTGCACTCCACTAAATTGCCAACAAGGGTACAATTTTATAGCAGTAA
CTTCATTTTCATGGTCCCAAAAGCCAGAGATAGCGTAGTAGCAACAATAG
AGAGGTACCCAGATTCCAGAAAAGAACCAAAACGCGCTTATCGATGGAAT
AGTACAATAAAGTTTTAAACTTAGGAGAGACAAGCAAAACCAGACTGGCC
ATTGGTGGTACTAGTTTTCCGAGGTTGTCACAAGTCCATGGGAAAAGTGA
AAGAGCAACCCACTTCACCAATCAAACCAtcttcttcttcttcttcttac
gttatacttctgcttcAAATCATGAGCAAAAGGAGAACCTGGGTATGTGT
TTTTGTGCTTGTTTATGGCTTGCTCTTCACATCTTCCTGGAACATTCTCA
AGTCCATGATTTCGTGGTACAAGTTGCAAGCTGAGtcatcatcatcatca
tcttcTTGTTGGTGGCCTGCACTCTCTGCCTCGCTGCTTCTCGGAGCTGT
TTTTGGGGTTCTTTCAATGGTGGCAGCTTTTGCTGTGGTGGTGCCTGCGG
TTCTGGTCACGTGGATCGCCATAGTGGTGTTGTTGGCTTTCTTTGGTAAG
CCTAAGAGGACTTTGGTTGTGGAGGGAAGGAAGATTACGAGGGAGATTTT
CAGTTTTGTGGTGAAGGTTTTGCTGAAAGAAGGGAATATAGTGGCTGCTG
TTTGTGCTGTTTTGGGCTACTTTGTTCTTGGGAGAACAAATGGAAAAGGT
GTTGACTCAATTGCTTTAGATTAAGTTTCATAATTGATTTTGATTCTGAG
GTTAGTTTTTAGGATTTGGGTTGGTAAAGTGTATTGATCTCTTTATTTTG
CATTGATTTAGATTAAATTCAGATTTAGATTAGGTAAAGTGTCTTTAATG
AAATTGTTAAATTGTTAAATATCATTACCTCCT
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protein sequence of Vigun05g215100.1_Vu_IT97K-499-35_v1.1

>Vigun05g215100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g215100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g215100.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=179bp
MGKVKEQPTSPIKPSSSSSSYVILLLQIMSKRRTWVCVFVLVYGLLFTSS
WNILKSMISWYKLQAESSSSSSSCWWPALSASLLLGAVFGVLSMVAAFAV
VVPAVLVTWIAIVVLLAFFGKPKRTLVVEGRKITREIFSFVVKVLLKEGN
IVAAVCAVLGYFVLGRTNGKGVDSIALD*
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mRNA from alignment at Vu05:40712513..40713445+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun05g215100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g215100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g215100.1; organism=Vigna unguiculata; type=mRNA; length=933bp; location=Sequence derived from: Vu05:40712513..40713445+ (Vigna unguiculata
TAGGTGCACTCCACTAAATTGCCAACAAGGGTACAATTTTATAGCAGTAA CTTCATTTTCATGGTCCCAAAAGCCAGAGATAGCGTAGTAGCAACAATAG AGAGGTACCCAGATTCCAGAAAAGAACCAAAACGCGCTTATCGATGGAAT AGTACAATAAAGTTTTAAACTTAGGAGAGACAAGCAAAACCAGACTGGCC ATTGGTGGTACTAGTTTTCCGAGGTTGTCACAAGTCCATGGGAAAAGTGA AAGAGCAACCCACTTCACCAATCAAACCATCTTCTTCTTCTTCTTCTTAC GTTATACTTCTGCTTCAAATCATGAGCAAAAGGAGAACCTGGGTATGTGT TTTTGTGCTTGTTTATGGCTTGCTCTTCACATCTTCCTGGAACATTCTCA AGTCCATGATTTCGTGGTACAAGTTGCAAGCTGAGTCATCATCATCATCA TCTTCTTGTTGGTGGCCTGCACTCTCTGCCTCGCTGCTTCTCGGAGCTGT TTTTGGGGTTCTTTCAATGGTGGCAGCTTTTGCTGTGGTGGTGCCTGCGG TTCTGGTCACGTGGATCGCCATAGTGGTGTTGTTGGCTTTCTTTGGTAAG CCTAAGAGGACTTTGGTTGTGGAGGGAAGGAAGATTACGAGGGAGATTTT CAGTTTTGTGGTGAAGGTTTTGCTGAAAGAAGGGAATATAGTGGCTGCTG TTTGTGCTGTTTTGGGCTACTTTGTTCTTGGGAGAACAAATGGAAAAGGT GTTGACTCAATTGCTTTAGATTAAGTTTCATAATTGATTTTGATTCTGAG GTTAGTTTTTAGGATTTGGGTTGGTAAAGTGTATTGATCTCTTTATTTTG CATTGATTTAGATTAAATTCAGATTTAGATTAGGTAAAGTGTCTTTAATG AAATTGTTAAATTGTTAAATATCATTACCTCCT
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Coding sequence (CDS) from alignment at Vu05:40712513..40713445+

>Vigun05g215100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g215100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g215100.1; organism=Vigna unguiculata; type=CDS; length=537bp; location=Sequence derived from: Vu05:40712513..40713445+ (Vigna unguiculata
ATGGGAAAAGTGAAAGAGCAACCCACTTCACCAATCAAACCATCTTCTTC
TTCTTCTTCTTACGTTATACTTCTGCTTCAAATCATGAGCAAAAGGAGAA
CCTGGGTATGTGTTTTTGTGCTTGTTTATGGCTTGCTCTTCACATCTTCC
TGGAACATTCTCAAGTCCATGATTTCGTGGTACAAGTTGCAAGCTGAGTC
ATCATCATCATCATCTTCTTGTTGGTGGCCTGCACTCTCTGCCTCGCTGC
TTCTCGGAGCTGTTTTTGGGGTTCTTTCAATGGTGGCAGCTTTTGCTGTG
GTGGTGCCTGCGGTTCTGGTCACGTGGATCGCCATAGTGGTGTTGTTGGC
TTTCTTTGGTAAGCCTAAGAGGACTTTGGTTGTGGAGGGAAGGAAGATTA
CGAGGGAGATTTTCAGTTTTGTGGTGAAGGTTTTGCTGAAAGAAGGGAAT
ATAGTGGCTGCTGTTTGTGCTGTTTTGGGCTACTTTGTTCTTGGGAGAAC
AAATGGAAAAGGTGTTGACTCAATTGCTTTAGATTAA
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