Vigun05g217300.1

Transcript Overview
NameVigun05g217300.1
Unique NameVigun05g217300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1581
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu05supercontigVu05:40917516..40919096 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL094Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuR322Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL057Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuL432Pisum sativum Cameor genome v1aPisum sativum
crvuL495Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL181Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL493Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuL0047Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0073Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuL0406Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1023Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0274Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0566Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0736Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1056Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1110Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL117Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL161Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL594Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR398Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL189Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL161Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL725Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL687Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL219Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL102Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL248Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR261Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR275Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR279Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL038Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL059Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL093Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL227Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL515Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL043Cicer arietinum
carvuL488Cicer arietinum
ccavuL099Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL387Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL389Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR413Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR480Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR483Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR494Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR425Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR448Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL409Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL470Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL523Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL061Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL425Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL486Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL529Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL161Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL237Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL422Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL460Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR315Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR337Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Cc_v2.0_09733.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat5g270720.1Pisum sativum Cameor genome v1aPisum sativum
Vum_06G00904.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Tiffany.R1.1g033920.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_022488Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr11.1058Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg43879.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
XM_058924018.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Hedin2.R1.1g050000.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_11717Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg5670.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.005G106200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigst.07G071700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-KK1_024795Cajanus cajan Asha genome v1.0Cajanus cajan
Vigan.07G095100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.06G133200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
LR48_mrnaVigan08g110000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_004487251.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.011G113200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Va05G044150.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vum_07G00766.1Vigna umbellata FF25 genome v1.0Vigna umbellata
LR48_mrnaVigan05g151000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_00621.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigan.06G136400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va08G052600.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr05.2087Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_23974.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014638222.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr05.708Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Cr_11521.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun05g217300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun11g108300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun11g108300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun05g217300Vigun05g217300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g217300.1Vigun05g217300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun05g217300.1_Vu_IT97K-499-35_v1.1Vigun05g217300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g217300.1.v1.1.five_prime_UTR.1Vigun05g217300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g217300.1.v1.1.CDS.1Vigun05g217300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g217300.1.v1.1.three_prime_UTR.1Vigun05g217300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun05g217300.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..125

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun05g217300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g217300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g217300.1; organism=Vigna unguiculata; type=mRNA; length=1581bp
tgttccttattttaatcataaAAATTATGTTAAAAATAAAAAAATATTTT
TGAAATTGGACATAATATATCTTAAGAGTAATCGTACGAAATGTAGGTAG
ATGTCCGATACTAATCTAACACTAAATACACCATTTATGAAAAGTGTCAG
GCGATCATAGTTTCCAAGATGGAAAAGATATAAATCATTGCATATGTTCC
CAGTGTCGTTTTGCCCAAGGAACAAACAATTAACTCACCGTCATTTTACT
CACCAAACTCAGTACAACCTGTGACTATAAAACGCAGCCATAGCTTTCAA
CTTCAACACAATCTCAATTGAAATCTCATCACACAATGGCTTCCAAAGTT
TCCTCTCTCTTTGCGTTTGTTCTCATCACCACCATCCTTCTTGCCACTAC
ATGGCAAGCAGTTGCAAGACGCCACACTAAACTAAAGTACTCATACAAAG
GGGACAAGAAACAACCTCAGTTTTTCTTCCCTTCTGATGGTTATAGTCCT
GGCTTTGGGAGATTAGGGTTTCCTCCTTTCTTTGGGTTTACACCTCAAAA
TCCAAACATCGGTGGTGGTGGTGGTGAAGTAGAGCCAGCACCAGTTTCAG
GTGGTGGATATGTTCCAGGTGGAGATGACACCTTTGTCCCAAACCCAGGT
TTTGAGGTTCCAAACCCTAGAAATGGTGGTGGAGTTCCAGTTCCAGTTCC
AGTGAATCCATGAGTGAGCTAGCTACCATGCTCTATGCATGATGGCACTA
GTTAGGTGTAGTTTCCATGCATGTTATATTATGGTTTTGCAAAATTGAAG
TACTAGCTAGTGTACTGTTTTTTGTGTTGGTGAATAAGTTTTGTGTCTAG
CTACTATGTGTGATATGCAGAGTCTTTCTGCTACATCAAATGAATTAATC
ATATGAGTAATGCTGGTTGAATTGTTAGTCATAACTCGTTTATTTCAATT
ATCatagatagatagataaatagatatatagaATCACAATTATGAGAGGA
AGGAAAAAGGGTAAAATAGTAAGATTGTTAGAGTGAATAAATCAAAGAAT
AAGAGAAAGAAAGCTTATAAGTAAGTTTCTTTAGATTTAAAGAAAAAAAA
AATAGAAAGTGAATAGTGAAAAGTAACAAATTTGTATTAGATATAATTGA
TGTATAAAAATAATTAAAATTATCTTAAATATATTTGAGttgttagattt
atttgatgtttcgtacgtatcttaggattgtatttgagttgtttatattg
tttgatacattttttatttaatgttaagtcaaatactattatgaaacgcg
tttgaaatgttaaataaatttaataaaatttgattaaaaagactaaatct
acgtatttcaaaagatgaaagactaaattggtccaaaatttcgaaatgaa
ctaattccaaaattcactgaaaattaaaagaacaaaaacatatttaaccc
taTTTTAACATTATCTAACATATTATTTACCTATGATTAGATACTAATTT
ACGAAGACGGATATATAAAATCTTAAAAAGCATAAAAGAAAAAAAAATAT
TTAGATAGAAAAGTGTAATTTTGAGGAATTT
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protein sequence of Vigun05g217300.1_Vu_IT97K-499-35_v1.1

>Vigun05g217300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g217300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g217300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=126bp
MASKVSSLFAFVLITTILLATTWQAVARRHTKLKYSYKGDKKQPQFFFPS
DGYSPGFGRLGFPPFFGFTPQNPNIGGGGGEVEPAPVSGGGYVPGGDDTF
VPNPGFEVPNPRNGGGVPVPVPVNP*
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mRNA from alignment at Vu05:40917516..40919096+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun05g217300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g217300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g217300.1; organism=Vigna unguiculata; type=mRNA; length=1581bp; location=Sequence derived from: Vu05:40917516..40919096+ (Vigna unguiculata
TGTTCCTTATTTTAATCATAAAAATTATGTTAAAAATAAAAAAATATTTT
TGAAATTGGACATAATATATCTTAAGAGTAATCGTACGAAATGTAGGTAG
ATGTCCGATACTAATCTAACACTAAATACACCATTTATGAAAAGTGTCAG
GCGATCATAGTTTCCAAGATGGAAAAGATATAAATCATTGCATATGTTCC
CAGTGTCGTTTTGCCCAAGGAACAAACAATTAACTCACCGTCATTTTACT
CACCAAACTCAGTACAACCTGTGACTATAAAACGCAGCCATAGCTTTCAA
CTTCAACACAATCTCAATTGAAATCTCATCACACAATGGCTTCCAAAGTT
TCCTCTCTCTTTGCGTTTGTTCTCATCACCACCATCCTTCTTGCCACTAC
ATGGCAAGCAGTTGCAAGACGCCACACTAAACTAAAGTACTCATACAAAG
GGGACAAGAAACAACCTCAGTTTTTCTTCCCTTCTGATGGTTATAGTCCT
GGCTTTGGGAGATTAGGGTTTCCTCCTTTCTTTGGGTTTACACCTCAAAA
TCCAAACATCGGTGGTGGTGGTGGTGAAGTAGAGCCAGCACCAGTTTCAG
GTGGTGGATATGTTCCAGGTGGAGATGACACCTTTGTCCCAAACCCAGGT
TTTGAGGTTCCAAACCCTAGAAATGGTGGTGGAGTTCCAGTTCCAGTTCC
AGTGAATCCATGAGTGAGCTAGCTACCATGCTCTATGCATGATGGCACTA
GTTAGGTGTAGTTTCCATGCATGTTATATTATGGTTTTGCAAAATTGAAG
TACTAGCTAGTGTACTGTTTTTTGTGTTGGTGAATAAGTTTTGTGTCTAG
CTACTATGTGTGATATGCAGAGTCTTTCTGCTACATCAAATGAATTAATC
ATATGAGTAATGCTGGTTGAATTGTTAGTCATAACTCGTTTATTTCAATT
ATCATAGATAGATAGATAAATAGATATATAGAATCACAATTATGAGAGGA
AGGAAAAAGGGTAAAATAGTAAGATTGTTAGAGTGAATAAATCAAAGAAT
AAGAGAAAGAAAGCTTATAAGTAAGTTTCTTTAGATTTAAAGAAAAAAAA
AATAGAAAGTGAATAGTGAAAAGTAACAAATTTGTATTAGATATAATTGA
TGTATAAAAATAATTAAAATTATCTTAAATATATTTGAGTTGTTAGATTT
ATTTGATGTTTCGTACGTATCTTAGGATTGTATTTGAGTTGTTTATATTG
TTTGATACATTTTTTATTTAATGTTAAGTCAAATACTATTATGAAACGCG
TTTGAAATGTTAAATAAATTTAATAAAATTTGATTAAAAAGACTAAATCT
ACGTATTTCAAAAGATGAAAGACTAAATTGGTCCAAAATTTCGAAATGAA
CTAATTCCAAAATTCACTGAAAATTAAAAGAACAAAAACATATTTAACCC
TATTTTAACATTATCTAACATATTATTTACCTATGATTAGATACTAATTT
ACGAAGACGGATATATAAAATCTTAAAAAGCATAAAAGAAAAAAAAATAT
TTAGATAGAAAAGTGTAATTTTGAGGAATTT
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Coding sequence (CDS) from alignment at Vu05:40917516..40919096+

>Vigun05g217300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g217300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g217300.1; organism=Vigna unguiculata; type=CDS; length=378bp; location=Sequence derived from: Vu05:40917516..40919096+ (Vigna unguiculata
ATGGCTTCCAAAGTTTCCTCTCTCTTTGCGTTTGTTCTCATCACCACCAT
CCTTCTTGCCACTACATGGCAAGCAGTTGCAAGACGCCACACTAAACTAA
AGTACTCATACAAAGGGGACAAGAAACAACCTCAGTTTTTCTTCCCTTCT
GATGGTTATAGTCCTGGCTTTGGGAGATTAGGGTTTCCTCCTTTCTTTGG
GTTTACACCTCAAAATCCAAACATCGGTGGTGGTGGTGGTGAAGTAGAGC
CAGCACCAGTTTCAGGTGGTGGATATGTTCCAGGTGGAGATGACACCTTT
GTCCCAAACCCAGGTTTTGAGGTTCCAAACCCTAGAAATGGTGGTGGAGT
TCCAGTTCCAGTTCCAGTGAATCCATGA
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