Vigun05g229600.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun05g229600.1 vs. DB:Swiss
Match: CND2_ARATH (Condensin complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CAPH PE=1 SV=1) HSP 1 Score: 642.114 bits (1655), Expect = 0.000e+0 Identity = 359/663 (54.15%), Postives = 461/663 (69.53%), Query Frame = 1
Query: 1 MAETLSPNPTMAHKKRVPMSARMQSPTSPFFVGSNDDQLEXXXXXXXXXXXXXHKSLAVNFHPHP-PKSPSCLNEHQILDLFHNCIKLASENKINQKNTWELDLIDHLTDIIRVEEGNHVETNFQIASCTLEAGVRIYSLRVDSVHSDAYKVLAGMNRVGQDTEEGATLGSVNAENGEASRKEVGKKLSHLSTLESSFEVLNVKKFDVAFAVDPLYHHTSAQFDEGGAKGLLMNNLGVYGKCRVLFDSLEVPAKCLTSQNDHDISDTIDLSFARDCVEQMILNMHTKDVISPTLRIIVNQFDENDGRPFYFQSSGEKSAEEFDAA--IDSELANGKEGYE-ICSSWSYDHDSQTFAAEWGFSDADPSFPSYHEEKEP------NVDDIFDNVDGYLFLSLGFRSKKNSWAGPDHWKYQKVQEGSKSKVPCTSEDELIQKTRQPRTKREVKVDLEFTSFLEKKIPDIFSPPKNPKSLLVSENISPCVTKLPEDWHYEPENLVNLFLLPHVKCIRRRARK-VPDVLEEQCYYNESFPSWDNGSV------CDGXXXXXXXXXXXXXXLVAQPRQINKIEVQYDKTSKQVNVQALKITLWDHIQESIQLPFQGQK------EKVSFRHILTNFPSKCNAAATISDISPHLCFICLLHLANEKGLSI 1920
M E+L+PNP +K + R+Q+PTSPFF+GSNDD+LER QARAARAAA R +S+ P +S C ++ QIL+LF NCIKLASENKINQKNTWEL+LIDHL +II+VE+ N+ ETNFQ ASCTLEAGV+IYS+RVDSVHS+AYKVL G+ R G D + EN +K+ KK+S LSTLE SF+ LNVKKFDVAFAVDPLYH TSAQFDEGGAKGLL+NNLGVYG C+VLFDS E+P K ++S N HD S+TIDLSF ++CVEQM+LNM KD I P+LR I+NQFDE + RP S G+++ E FD + D+ A+ EGYE +S+ Y+ S +G ++A+P + ++HEE EP + DD +NVD YLFLSLG SK+NSWAGPDHWKY+K + V SE + ++ R K++ + +L+F LE+++PDIF+PPKNPK+LL+ + +PC TKLPED HY+PENL+ LFLLP+V C+ RR RK + +Q E SW N +V D + +D +D++TL++QPRQ+NKI+VQYDK SKQV+VQ LK TLW+ +QES Q P Q ++ E SF+ +L +FP C AA DISPHLCFICLLHLANE LS+
Sbjct: 1 MDESLTPNPK---QKPASTTTRIQAPTSPFFLGSNDDRLEREQARAARAAASRRRSVIFARGSQPETESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNTETNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDGGDHEDAAGAVENATNQKKQPEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYGGCQVLFDSQEIPGKLVSSANKHDKSETIDLSFVKECVEQMVLNMRKKDEIVPSLRAIINQFDEENQRPSDTFSCGQQTTESFDISHGNDASYADDDEGYENFGTSFDYEGQSGDVDENFGPNEAEPIYSNFHEEVEPASLQDMDSDDRLENVDDYLFLSLGISSKQNSWAGPDHWKYRKTK---GPDVQPASEIKSSPPAKKTRKKKQAEPELDFAKALEEEMPDIFAPPKNPKTLLLPASRTPCQTKLPEDCHYQPENLIKLFLLPNVMCLGRRRRKNSGETSRQQPDDYEHGESWGNDNVYDDDDGPFDDNENDQSDAEDTNTLISQPRQVNKIDVQYDKASKQVDVQVLKETLWECLQESHQPPIQDEEHQQEPPESRSFKVLLASFPDDCQAAERTQDISPHLCFICLLHLANEHNLSL 657
BLAST of Vigun05g229600.1 vs. DB:Swiss
Match: CND2_SCHPO (Condensin complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cnd2 PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 9.994e-36 Identity = 138/491 (28.11%), Postives = 226/491 (46.03%), Query Frame = 1
Query: 223 HQI--LDLFHNCIKLASENKINQKNTWELDLIDHLTDIIRVEEGNHVETNFQIASCTLEAGVRIYSLRVDSVHSDAYKVLAGM---NRVGQDTEEGATLGSVNAENGE---ASRKEVGKKLSHLSTLESSFEVLNVKKFDVAFAVDPLYHHTSAQFDEGGAKGLLMNNLGVYGKCRVLFDSLEVPAKCLTSQNDHDISDTIDLSFARDCVEQMILNMH---TKDVISPTLRIIVNQFDENDGRP----FYFQSSG---------------------------EKSAEEFDAAIDSELANGKEGYEICSSWSYDHDSQTFAAEWGFSDADPS-FPSYHEEKEPNVDDIFDNVDGYLFLSLGF---------RSKKNSWAGPDHWKYQKVQEGS-------KSKVPCTSEDELIQKTRQPRTKREVKVDLEFTSFLEKKIPDIFSPP----KNPKSLLVSENISPCVTKLPEDWHYEPENLVNLFLLPHVKCI 1506
HQ+ L F IKLA++NKIN NTW LID+ D+ + +G + NFQ ASCTL+ V+IY+ R+DSV ++ K+L+G+ ++V Q TEEG +AEN + +KE + + TL FE + KKF++ + DPL+ A FDE GAKGLLMN+L V R++FDS + K L +++ S ++ + + + N+H +++ ++ + D+ P F F S G EK+ + DAA S ++G+EG+ + + +D + + D S P + + E N+ D + Y +S +S K +WAGP+HW+ Q +++ S S D + + K+ ++D E + +F+P K PKS N C+ LP+D+ Y+ + L+ LFL P + +
Sbjct: 63 HQVPVLSNFEEWIKLATDNKINSTNTWNFALIDYFHDMSLLRDGEDI--NFQKASCTLDGCVKIYTSRIDSVATETGKLLSGLANDSKVLQQTEEGE-----DAENDDEDLQKKKERKRAQRSVKTLVKDFESIRAKKFELECSFDPLFKKMCADFDEDGAKGLLMNHLCVDQHGRIVFDSSDTVIKDLENKDVEAESQEAVVAAPIESHDTEMTNVHDNISRETLNGIYKCYFTDIDQLTICPSLQGFEFDSKGNLDVSLLKSLSDEVNMITTTSLVDNTMEKT--DADAASLSSDSDGEEGHIVHALEEMAYDEENPYVDVVPKAMDESENPDFGVDTEVNMADGSTMNENYSIISTAAANGVYEYFDKSMKKNWAGPEHWRIQALRKNINNASTVFNSSNTAESSDNVSRSLSSTERKKRRELDNAIDFLQEVDVEALFTPATSSLKLPKSHWKRHN--RCL--LPDDYQYDSKRLLQLFLKPKMSVL 540
BLAST of Vigun05g229600.1 vs. DB:Swiss
Match: CND2_MOUSE (Condensin complex subunit 2 OS=Mus musculus OX=10090 GN=Ncaph PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 6.691e-34 Identity = 168/666 (25.23%), Postives = 278/666 (41.74%), Query Frame = 1
Query: 226 QILDLFHNCIKLASENKINQKNTWELDLIDHLTDIIRVEEGNHVETNFQIASCTLEAGVRIYSLRVDSVHSDAYKVLAGMNRVGQDT----EEGATLGSVNAENGEASRKEVGKKLSHLSTLESSFEVLNVKKFDVAFAVDPLYHHTSAQFDEGGAKGLLMNNLGVYG-KCRVLFDS----------LEVPAKCLTSQNDHDISDTIDLSFA-RDCVEQMIL---------NMHTKDVISPTLRIIVNQFDENDGRPFYFQSSGEKSAEEFDAAIDSELANGKEGYEICSSWSYDHDSQTFAAEWGFSDADPSFPSYHE--EKEPNVDDIFDNVDGYLFLSLGFRSKK------------NSWAGPDHWKYQKVQEGSKSKVPCTSEDELIQKTRQPRTKREVKVDLEFTSFLEKKIPDIFSPPKNPKSLLVS--ENISPCVTKLPEDWHYEPENLVNLFLLPHVKCIR--RRARKVPDVLEEQCYYNESFPSWDNGSVCDGXXXXXXXXXXXXXXLVAQP----------------------------------------RQINKIEVQYDKTSKQVNVQALKITLWDHI--------------QESIQLPFQGQKEKVSFRHILTNFPSKCNA---AATISDISPHLCFICLLHLANEKGLSIQ 1923
QI + + CIKL+SENKI KN + L LID +++I++ ++ TNF++A+ TL+A +IY++RVD+VH+D Y+VL G+ G+DT EE + E + KK T+E + +NV + D AVDP++ T+A FDE G+ ++ L + +LF S LE+P D D DL + + CVE L + + ++ +V++F +ND F + E +E D + + + E S + DH+ F S+ E + + N +++ D + + F S K WAGPDHW+++ + CT K+ K D E + F K L S EN + T LP D+HYE +NL+ L L P + ++ + + + EE Y+ + P+ D + C G + ++D +++ L A P +++NKIE+ Y KT+K+++++ LK ++W + ES Q +G E+V+ L+ ++S L F CLLHLANEK L ++
Sbjct: 101 QITEHYSTCIKLSSENKITTKNAFGLHLIDFMSEILKQKDAE--PTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGL---GKDTPPQGEESHSGDGSTLETERTKKPAKPKKKQSCKTIEQNLSNINVSEADGKCAVDPMFQKTAASFDECSTTGVFLSTLHCQDYRSELLFPSDMQTLSSGEPLELP--------DLGFVDMTDLEASLQQCVEDRPLCPSLAGFQFTKWDSETHNESVSALVDKFKKNDQ---VFDINAEAEDDEEDVPDGPLVEDFVDNDEPDLSAAGDHE---------------EFRSWKELCQVQSNQEEVISLEDRDIQVMCSFLSMKPGEYSYFSPRTMKMWAGPDHWRFRP--RPKQDATSCTE-----------HKKKSAKKDFEINFDDDIDFDAYFQKTKAATILTKSTLENQNWKATTLPTDFHYETDNLIQLHLKPGKRSLKMDQDQKAKTEHYEEIEDYDYNNPN-DTSNYCPG-LQAADSDYEEADDLFADPVGTLDLESDPKTTQENGHISPENQGVDITTYQELNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTKFSRKEADTEANHTESGQ---EGAPEEVADEKKLSGLTKDLQTRLPPLMAQNLSIPLAFACLLHLANEKNLKLE 717
BLAST of Vigun05g229600.1 vs. DB:Swiss
Match: CND2_XENLA (Condensin complex subunit 2 OS=Xenopus laevis OX=8355 GN=ncaph PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.720e-25 Identity = 122/460 (26.52%), Postives = 201/460 (43.70%), Query Frame = 1
Query: 214 LNEHQILDLFHNCIKLASENKINQKNTWELDLIDHLTDIIRVEEGNHVETNFQIASCTLEAGVRIYSLRVDSVHSDAYKVLAGMNRVGQDTEEGATLGSVNAENGEASRKEVGKKLSHLSTLESSFEVLNVKKFDVAFAVDPLYHHTSAQFDEGGAKGLLMNNLGVYGKCRVLFDSLEVPA--KCLTSQNDHD-----ISDTIDL-SFARDCVEQMIL---------NMHTKDVISPTLRIIVNQFDENDGRPFYFQSSGEKSAEEFDAAIDSELANGKEGYEICSSWSYDHDSQTFAAEWGFSDADPSFPSYHEEKEPNVDDIFDNVDGYLFLSLGFRSKKNSWAGP---------DHWKYQKVQEGSKSKVPCTSEDELIQKTRQPRTKREVKV-------DLEF-TSFLEKKIPDIFSPPKNPKSLLVSENISPCVTKLPEDWHYEPENLVNLFLLP 1491
LN QI D + CIKL+ ENKI KN + L LID++ DI++ ++ TNF++A+ TL+A +IY++RVD+VH+D YKVL G+ + Q TE+ T + RK ++ T+E + +N + + +DPL+ +A FDE G+ ++ L KC L A K L++ + + D+ +L S CVE+ L D + L +++++F ++D F + E E +A + E ++C A + G A+ E K + I + G + L L + S+ P +HW+++ Q+ S T D Q R K+ KV D++F F + + + KS L S+N T LP D+HY+P+N+ + L P
Sbjct: 92 LNNTQISDHYSTCIKLSQENKITTKNAFGLHLIDYMGDILKHKDSEL--TNFKVAAGTLDASAKIYAVRVDAVHADVYKVLGGLGKESQATED--TENQETDTGPQDGRKNPKRRKCSYKTIERNLNSINRSETERKSEIDPLFQKAAASFDEFSTAGVFLSTL----KCHSYHSELHFDADVKPLSTAEETEPPSPGSMDSTELKSLFLQCVEKRPLCPSLSGFRFMQWNSDAQNENLSLLMDKFKKSD-HVFDINAEVEDDFVESEAPVADEF-----DADVCEGMD--------AGDIG-EFAEHREACRLERKGAQLTQIGNGDIGTMCLQLSSCPGEYSYFSPRTMSMWAGPEHWRFRPRQKAS------TDSD-------QQRVKKAKKVFELNFEDDIDFEVHFRKTRAATTLT-----KSTLESQNKK--STTLPADFHYDPDNIARMSLRP 508
BLAST of Vigun05g229600.1 vs. DB:Swiss
Match: CND2_HUMAN (Condensin complex subunit 2 OS=Homo sapiens OX=9606 GN=NCAPH PE=1 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 2.625e-22 Identity = 59/168 (35.12%), Postives = 97/168 (57.74%), Query Frame = 1
Query: 226 QILDLFHNCIKLASENKINQKNTWELDLIDHLTDIIRVEEGNHVETNFQIASCTLEAGVRIYSLRVDSVHSDAYKVLAGMNRVGQDTEEGATLGSVNAENGEASRKEVG-------KKLSHL-STLESSFEVLNVKKFDVAFAVDPLYHHTSAQFDEGGAKGLLMNNL 705
QI + + CIKL++ENKI KN + L LID +++I++ ++ TNF++A+ TL+A +IY++RVD+VH+D Y+VL G+ + + +L V + S E+G K HL T+E + LNV + D +DP++ T+A FDE G+ ++ L
Sbjct: 106 QITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQKDTE--PTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGK------DAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTL 265
BLAST of Vigun05g229600.1 vs. DB:Swiss
Match: CND2_YEAST (Condensin complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRN1 PE=1 SV=3) HSP 1 Score: 103.219 bits (256), Expect = 1.601e-21 Identity = 65/204 (31.86%), Postives = 105/204 (51.47%), Query Frame = 1
Query: 217 NEHQILDLFHNCIKLASENKINQKNTWELDLIDHLTDIIRVEEGNHVETNFQIASCTLEAGVRIYSLRVDSVHSDAYKVLAGMNRVGQDTEEGATLGS---------VNAENGEA--------------------SRKEVGKKLSHLSTLESSFEVLNVKKFDVAFAVDPLYHHTSAQFDEGGAKGLLMNNLGVYGKCRVLFDS 741
N ++ F IK+A++NKIN +N+W LID+ D+ +++G + NFQ AS TL+ ++IYS RVDSV ++ K+L+G+ Q GA+ G + ++ EA +R+ V ++ + +E FE + +K+ D +DPL+ FDEGGAK LL+N L + RV+FD+
Sbjct: 23 NRSTMMANFEEWIKMATDNKINSRNSWNFALIDYFYDLDVLKDGEN-NINFQKASATLDGCIKIYSSRVDSVTTETGKLLSGL---AQRKTNGASNGDDSNGGNGEGLGGDSDEANIEIDPLTGMPISNDPDVNNTRRRVYNRVLETTLVE--FETIKMKELDQELIIDPLFKKALVDFDEGGAKSLLLNTLNIDNTARVIFDA 220 The following BLAST results are available for this feature:
BLAST of Vigun05g229600.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 6
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun05g229600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g229600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g229600.1; organism=Vigna unguiculata; type=mRNA; length=2402bpback to top protein sequence of Vigun05g229600.1_Vu_IT97K-499-35_v1.1 >Vigun05g229600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g229600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g229600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=662bpback to top mRNA from alignment at Vu05:42296862..42301180- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun05g229600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g229600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g229600.1; organism=Vigna unguiculata; type=mRNA; length=4319bp; location=Sequence derived from: Vu05:42296862..42301180- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu05:42296862..42301180- >Vigun05g229600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g229600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g229600.1; organism=Vigna unguiculata; type=CDS; length=1986bp; location=Sequence derived from: Vu05:42296862..42301180- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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