Vigun05g234900.1

Transcript Overview


Name	Vigun05g234900.1
Unique Name	Vigun05g234900.1_Vu_IT97K-499-35_v1.1
Type	mRNA
Organism	Vigna unguiculata (cowpea)
Sequence length	708

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vu05	supercontig	Vu05:42848930..42849752 -	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
vuvuL019	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vuvuL094	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
psvuL432	Pisum sativum Cameor genome v1a	Pisum sativum
psvuL442	Pisum sativum Cameor genome v1a	Pisum sativum
pvvuL029	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
psvuL781	Pisum sativum Cameor genome v1a	Pisum sativum
pvvuL180	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvvuL493	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
cavuL039	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavuL198	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavuL530	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ccvuL1017	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccvuL1108	Cajanus cajan Asha genome v1.0	Cajanus cajan
anvuL0110	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL0280	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL0568	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL0672	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL0898	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL0995	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL1056	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL1110	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asvuL116	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuL463	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuL594	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
vuzwsR372	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vuzwsR398	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vuzwsR407	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vuzwsR409	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
tifvuL189	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vfhvuL161	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvuL389	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vfhvuL359	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvuL631	Vicia faba cv. Tiffany genome v1.0	Vicia faba
tifvuL730	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vfhvuL587	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vfhvuL690	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vrvvuL216	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vrvvuL248	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vssvuL102	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vssvuL227	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vssvuL506	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vuvuaR245	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vuvuaR261	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vuvuaR275	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuL038	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvuL180	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvuL498	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjvuL059	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvuL383	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvuL515	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carvuL043		Cicer arietinum
carvuL206		Cicer arietinum
carvuL278		Cicer arietinum
carvuL488		Cicer arietinum
ccavuL099	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavuL217	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavuL293	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavuL387	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vuvumR471	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvumR483	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvumR494	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvvaR413	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vuvvaR415	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vuvvaR448	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vuvvaR475	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vstvuL345	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vstvuL470	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vstvuL523	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvuL367	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvuL486	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvuL529	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
pvfvuL030	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvuL161	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvuL422	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
vuvunR303	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vuvunR315	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vuvunR337	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
Vfaba.Hedin2.R1.6g019920.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
rna-XM_004487429.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Psat07G0439800-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
rna-KK1_034627	Cajanus cajan Asha genome v1.0	Cajanus cajan
rna-KK1_022352	Cajanus cajan Asha genome v1.0	Cajanus cajan
Phvul.011G095400.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vigan.06G163400.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Va05G047690.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
LR48_mrnaVigan08g136100	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
evm.model.Chr11.1211	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
PvulFLAVERTChr11.562	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
rna-TanjilR_23664	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Cc_v2.0_23770.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vum_06G01074.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Cc_v2.0_09571.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
XM_058920730.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Va08G058730.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vfaba.Hedin2.R1.1g062080.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigst.06G147600.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
rna-XM_014637793.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigan.07G075600.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Phvul.005G122600.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Psat05G0722700-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
PvulFLAVERTChr05.1000909	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigst.07G056900.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vfaba.Tiffany.R1.1g042480.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
rna-TanjilR_17081	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
evm.model.Chr05.2231	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan05g166700	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
jg44156.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
rna-TanjilR_03165	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
jg7729.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vfaba.Tiffany.R1.6g015080.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
XM_058877384.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Vum_07G00605.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Vigun11g125600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Vigun11g125600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Vigun05g234900.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vigun05g234900	Vigun05g234900_Vu_IT97K-499-35_v1.1	Vigna unguiculata	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vigun05g234900.1	Vigun05g234900.1_Vu_IT97K-499-35_v1.1-protein	Vigna unguiculata	polypeptide
Vigun05g234900.1_Vu_IT97K-499-35_v1.1	Vigun05g234900.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun05g234900.1.v1.1.CDS.2	Vigun05g234900.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun05g234900.1.v1.1.CDS.1	Vigun05g234900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun05g234900.1.v1.1.three_prime_UTR.1	Vigun05g234900.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun05g234900.1.v1.1.five_prime_UTR.1	Vigun05g234900.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR

Homology

The following BLAST results are available for this feature:

BLAST of Vigun05g234900.1 vs.

BLAST of Vigun05g234900.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF01190	Pollen_Ole_e_I	coord: 27..93 e-value: 2.6E-8 score: 34.2

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Vu05:42848930..42849752-
coding sequence from alignment at Vu05:42848930..42849752-

mRNA sequence

>Vigun05g234900.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g234900.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g234900.1; organism=Vigna unguiculata; type=mRNA; length=708bp
TTCTCTTTCTCATCCCACAGCATGGCGTTTGCTAAGGTTATCACAGCGCT
TATTCTTGCAGTCACTATGGTCAGAATTAGACCCTCGGCATGCCAAACAG
TACAAGGCAAAGTCTCTTGCACTGACTGCACTCACAGCTACGATTTCTCT
GGCATTATGGTCTCAGTGAAGTGTGAAGGTGTGAAAAAGATTGCCATGGC
GACAACAGAAGACAAGGGTTTCTTTAAGGTTGATCTTCCCAGAGACCATG
CAAAAGCTCTCTCAGAGAAGTGTCTTGTGAAACTTCTTGGGGGGCCAAAT
CATCTGTATGCTACAGAGAAGAACCAGATCTCTGAAATTGTGAAGGGAAA
AGAGAAAAACACTTACACAATCTCTACTCCTCTTAGTTTTTTGAGATCGT
GTCCCCAAAACAGAGAATGCAAGGTTACTGAGAACCAGTTCAGTTCATCC
AAAACTTTGGATCTTCCTTTGCCTCCAGAGTGGGGTTTGGCACCCACCAG
CTACTATCTTCCTTTTCTTCCCATCATTGGAATACCTTAGTGTGTCCATT
TAACAGGTAATATCTGGGAAGAAAAAGAAAACAGTGTTCATATATATGCA
TATCATGTGTGTAACATGAAAAATGTCATAAATATCAATTATGTCTTGAA
GGAAGTTGATTTCAGCCACAGAAATAAAATTTCGTTTTAATTTGACCCAG
AGAAATAG

protein sequence of Vigun05g234900.1_Vu_IT97K-499-35_v1.1

>Vigun05g234900.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g234900.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g234900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=173bp
MAFAKVITALILAVTMVRIRPSACQTVQGKVSCTDCTHSYDFSGIMVSVK
CEGVKKIAMATTEDKGFFKVDLPRDHAKALSEKCLVKLLGGPNHLYATEK
NQISEIVKGKEKNTYTISTPLSFLRSCPQNRECKVTENQFSSSKTLDLPL
PPEWGLAPTSYYLPFLPIIGIP*

mRNA from alignment at Vu05:42848930..42849752-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vigun05g234900.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g234900.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g234900.1; organism=Vigna unguiculata; type=mRNA; length=823bp; location=Sequence derived from: Vu05:42848930..42849752- (Vigna unguiculata
TTCTCTTTCTCATCCCACAGCATGGCGTTTGCTAAGGTTATCACAGCGCT
TATTCTTGCAGTCACTATGGTCAGAATTAGACCCTCGGCATGCCAAACAG
TACAAGGCAAAGTCTCTTGCACTGACTGCACTCACAGCTACGATTTCTCT
GGTTTGTATCCACTCTCAATATTATTTTCAAATGAATTCTAATAATGCAA
AACGTATTATATATAACTAAAAACACATTTTGTGCACCTAGATTTTACAA
CTCTTGATGTTTTCAGGCATTATGGTCTCAGTGAAGTGTGAAGGTGTGAA
AAAGATTGCCATGGCGACAACAGAAGACAAGGGTTTCTTTAAGGTTGATC
TTCCCAGAGACCATGCAAAAGCTCTCTCAGAGAAGTGTCTTGTGAAACTT
CTTGGGGGGCCAAATCATCTGTATGCTACAGAGAAGAACCAGATCTCTGA
AATTGTGAAGGGAAAAGAGAAAAACACTTACACAATCTCTACTCCTCTTA
GTTTTTTGAGATCGTGTCCCCAAAACAGAGAATGCAAGGTTACTGAGAAC
CAGTTCAGTTCATCCAAAACTTTGGATCTTCCTTTGCCTCCAGAGTGGGG
TTTGGCACCCACCAGCTACTATCTTCCTTTTCTTCCCATCATTGGAATAC
CTTAGTGTGTCCATTTAACAGGTAATATCTGGGAAGAAAAAGAAAACAGT
GTTCATATATATGCATATCATGTGTGTAACATGAAAAATGTCATAAATAT
CAATTATGTCTTGAAGGAAGTTGATTTCAGCCACAGAAATAAAATTTCGT
TTTAATTTGACCCAGAGAAATAG

Coding sequence (CDS) from alignment at Vu05:42848930..42849752-

>Vigun05g234900.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g234900.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g234900.1; organism=Vigna unguiculata; type=CDS; length=519bp; location=Sequence derived from: Vu05:42848930..42849752- (Vigna unguiculata
ATGGCGTTTGCTAAGGTTATCACAGCGCTTATTCTTGCAGTCACTATGGT
CAGAATTAGACCCTCGGCATGCCAAACAGTACAAGGCAAAGTCTCTTGCA
CTGACTGCACTCACAGCTACGATTTCTCTGGCATTATGGTCTCAGTGAAG
TGTGAAGGTGTGAAAAAGATTGCCATGGCGACAACAGAAGACAAGGGTTT
CTTTAAGGTTGATCTTCCCAGAGACCATGCAAAAGCTCTCTCAGAGAAGT
GTCTTGTGAAACTTCTTGGGGGGCCAAATCATCTGTATGCTACAGAGAAG
AACCAGATCTCTGAAATTGTGAAGGGAAAAGAGAAAAACACTTACACAAT
CTCTACTCCTCTTAGTTTTTTGAGATCGTGTCCCCAAAACAGAGAATGCA
AGGTTACTGAGAACCAGTTCAGTTCATCCAAAACTTTGGATCTTCCTTTG
CCTCCAGAGTGGGGTTTGGCACCCACCAGCTACTATCTTCCTTTTCTTCC
CATCATTGGAATACCTTAG

Search form

Vigun05g234900.1