Transcript Overview
| Name | Vigun07g063700.1 |
|---|
| Unique Name | Vigun07g063700.1_Vu_IT97K-499-35_v1.1 |
|---|
| Type | mRNA |
|---|
| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 991 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun07g063700.1 | Vigun07g063700.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun07g063700.1_Vu_IT97K-499-35_v1.1 | Vigun07g063700.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun07g063700.1.v1.1.five_prime_UTR.1 | Vigun07g063700.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun07g063700.1.v1.1.CDS.1 | Vigun07g063700.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun07g063700.1.v1.1.CDS.2 | Vigun07g063700.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun07g063700.1.v1.1.CDS.3 | Vigun07g063700.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun07g063700.1.v1.1.CDS.4 | Vigun07g063700.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun07g063700.1.v1.1.CDS.5 | Vigun07g063700.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun07g063700.1.v1.1.CDS.6 | Vigun07g063700.1.v1.1.CDS.6_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun07g063700.1.v1.1.CDS.7 | Vigun07g063700.1.v1.1.CDS.7_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun07g063700.1.v1.1.three_prime_UTR.1 | Vigun07g063700.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
BLAST of Vigun07g063700.1 vs. DB:Swiss
Match: VP372_ARATH (Vacuolar protein-sorting-associated protein 37 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=VPS37-2 PE=1 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 1.899e-70 Identity = 108/161 (67.08%), Postives = 135/161 (83.85%), Query Frame = 1 Query: 64 GPVATLKNKSVDELRKLLSNKDAYQQFLHSLEEVKIQNHVNDELCKENLQLAEENLRKEPRIVELRNQYRIICTTELAAAQEKLNELYREKEKIIKLNSPLYLLQRIQDAMNKTDEESENLHHQFLDREIELGAFLQKYKKLRSAYHRKSLINLAAKTSNI 546
G +A LK+KSVDELRKLLS+KDAYQQFLHSL++V IQN++ +EL KE L LA ENL KEP+IVELRNQ RII T+ELA AQEKLNEL ++E+I+K SP LL R+QDAMN+ DEESE L +F++++I+ AF+QKYKKLRS YHR++LI+LAAKTS+I
Sbjct: 57 GIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENLEKEPQIVELRNQCRIIRTSELATAQEKLNELENQREEILKFYSPGSLLHRLQDAMNQVDEESEELQQKFMEKDIDTAAFVQKYKKLRSKYHRRALIHLAAKTSSI 217
BLAST of Vigun07g063700.1 vs. DB:Swiss
Match: VP371_ARATH (Vacuolar protein-sorting-associated protein 37 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS37-1 PE=1 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 1.985e-70 Identity = 108/161 (67.08%), Postives = 136/161 (84.47%), Query Frame = 1 Query: 64 GPVATLKNKSVDELRKLLSNKDAYQQFLHSLEEVKIQNHVNDELCKENLQLAEENLRKEPRIVELRNQYRIICTTELAAAQEKLNELYREKEKIIKLNSPLYLLQRIQDAMNKTDEESENLHHQFLDREIELGAFLQKYKKLRSAYHRKSLINLAAKTSNI 546
G + LK+KSVDELRKLLS+KDAYQQFL SL++VK+QN++ DEL +E LQLA +NL KEP+I+ELRNQ RII TTELA AQEKLNEL R+KE+I+K SP LL ++Q+AMN+ DEESE L +FL++EI+ AF+QKYKKLR+ YHR++LI+LAAKTSNI
Sbjct: 57 GIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARDNLEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILKFYSPGSLLHKLQEAMNQVDEESEALQEKFLEKEIDTAAFVQKYKKLRTTYHRRALIHLAAKTSNI 217
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 98..118 |
| None | No IPR available | COILS | Coil | Coil | coord: 125..145 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..25 |
| IPR009851 | Modifier of rudimentary, Modr | PFAM | PF07200 | Mod_r | coord: 29..170
e-value: 1.6E-31
score: 109.3 |
| IPR009851 | Modifier of rudimentary, Modr | PROSITE | PS51314 | VPS37_C | coord: 102..182
score: 15.601 |
| IPR037202 | ESCRT assembly domain | SUPERFAMILY | 140111 | Endosomal sorting complex assembly domain | coord: 122..170 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun07g063700.1_Vu_IT97K-499-35_v1.1 ID=Vigun07g063700.1_Vu_IT97K-499-35_v1.1; Name=Vigun07g063700.1; organism=Vigna unguiculata; type=mRNA; length=991bp
TTTGTTCCACGATAGTGACAACGACAAAGCGCAACGCGTAGCGGAAGTCA
TAAGAAAAAGAGACATTAATTTCAGAGCTCCCAACCAAAAACAGCGCAAA
ACCTCGTTGGTTCCGAAGCTTGAAACAGAACCATGTCCACTAGATTCCGG
GGATCACAGGAACACCAACATGGTTCTTCTTCCACCACCCATGATGGACC
TGTTGCTACTTTGAAGAATAAAAGTGTTGATGAGTTGCGGAAGCTTTTGT
CTAACAAAGACGCATATCAGCAGTTTTTACATTCACTGGAGGAGGTCAAG
ATTCAAAATCATGTGAATGATGAACTTTGCAAGGAGAATCTGCAGCTTGC
TGAGGAAAATCTACGAAAAGAACCTCGCATTGTGGAACTCAGGAACCAGT
ATAGAATAATTTGTACGACTGAGTTAGCTGCTGCTCAAGAGAAATTAAAC
GAGCTTTACAGGGAGAAAGAAAAAATAATTAAGTTGAATTCCCCACTGTA
CCTTCTCCAAAGGATTCAAGATGCTATGAATAAGACAGATGAGGAATCCG
AAAATCTGCACCATCAATTCCTTGACAGAGAGATTGAACTTGGAGCCTTT
TTGCAGAAATACAAAAAACTACGTAGCGCTTACCACAGGAAAAGTCTAAT
AAATCTTGCAGCTAAAACATCAAATATCTGAACATCACATAAGAATATCC
AGAATTAGGAATGTAACTTGTTTGTAGAGCCTCTAATTGATTTTCTGTTC
GTTCTTGCCAATACAGTAGTCATATATGTCAATATTTAAGTAGTTTCAGA
CCATCTGAAAAATAGTACACAATCTTCTCTTATTTGGCTCCTGCGTTATT
TTCATCAATAAGATTTTCCAAAGGCTATGTGTTGTATTGTAATTATCATC
GCTATTATAGGATCCAACTTGTGTTTGAAGTGTCTGGACATGTGAAAATA
ATGCGTTGTGCTTTTTCATAAAGGAAAGTTAAATTTCATCT back to topprotein sequence of Vigun07g063700.1_Vu_IT97K-499-35_v1.1 >Vigun07g063700.1_Vu_IT97K-499-35_v1.1 ID=Vigun07g063700.1_Vu_IT97K-499-35_v1.1; Name=Vigun07g063700.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=183bp
MSTRFRGSQEHQHGSSSTTHDGPVATLKNKSVDELRKLLSNKDAYQQFLH
SLEEVKIQNHVNDELCKENLQLAEENLRKEPRIVELRNQYRIICTTELAA
AQEKLNELYREKEKIIKLNSPLYLLQRIQDAMNKTDEESENLHHQFLDRE
IELGAFLQKYKKLRSAYHRKSLINLAAKTSNI* back to topmRNA from alignment at Vu07:7378112..7381077+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun07g063700.1_Vu_IT97K-499-35_v1.1 ID=Vigun07g063700.1_Vu_IT97K-499-35_v1.1; Name=Vigun07g063700.1; organism=Vigna unguiculata; type=mRNA; length=2966bp; location=Sequence derived from: Vu07:7378112..7381077+ (Vigna unguiculata
TTTGTTCCACGATAGTGACAACGACAAAGCGCAACGCGTAGCGGAAGTCA
TAAGAAAAAGAGACATTAATTTCAGAGCTCCCAACCAAAAACAGCGCAAA
ACCTCGTTGGTTCCGAAGCTTGAAACAGAACCATGTCCACTAGATTCCGG
TAACCCTCCTTGTTTTCAGATATGATTCTTTGCTTTTATTGTTTCTTTTA
ATTGATTCATCATTCATGTGATGTTTTAGGGGATCACAGGAACACCAACA
TGGTTCTTCTTCCACCACCCATGATGGACCTGTTGCTACTTTGAAGAATA
AAAGGTCTTCAACAAACGTCATATCATTTCTTCTGTTTTCGAAATTTTAA
TTTTTGTTATGTAACAGTGCATTGACTTTATGAATAATTTGATCTTGTTA
AATGAGAGTTTAATAGACATGCAATCTCACTTACAAATCACATGTTTTTT
GTACGGTTTTCAAGGTATTTATTGTAAAAATCAACGAATTATTACATAAA
CCAGTTTATGATAAGATTACGCTGTTACAGTTCGATGTCTTTTAAATATT
AGCAATATTAATAATTCCTTATTCTGTTTTTATGAACTTGGCAGTGTTGA
TGAGTTGCGGAAGCTTTTGTCTAACAAAGACGCATATCAGCAGTTTTTAC
ATTCACTGGAGGAGGTCAAGATTCAAAATCATGTAAGATATGCAGTGATC
ATGATGATTATTATTCTGAGAATTTCTAGAGTTCCCTTTTTGGTCACTTT
TTTCATATTAATTTCATTGTGTTGCTTGTAATATTTTGCCACGGTCTTTG
AGGTAATAGAGTATGCAATTTTTTTTCTGGTATCGTGTTGGATACAATGG
AGAAGAATTGGGGATATGCATATGAACTTATACGTCAGAATTTCTCCTAG
TTGAACGTATTTCTTGATCTGTCATGCTTTATAGATGAAATTGTTGTTTT
CGCTGAATTAAGAAAAACAGAAGAAATTGTTGAGGCATGTCAGTGCTATG
CATAAAATGGTTGATTGGTTGTAACATACCCTTTCAAAACAAAATGTTTT
TGTTAAATTTTCGTTTTCCCTTCGCAATGAGTGAGGCATATTAAGGTCAT
GTTTGGACACATTTCTCTATAAACTCCTTTTAAGAAAAGAGAGAGAGAGA
GAGAGAGAGAGAAATGTTGAATTAATTTCTCCTTAAACTAAAATTAGTGT
ATACAAAAGTAAAAGTTAGCTTGGATAGCCTTTCTAAATTTTTATTTTTA
ACTAGTGCATAAGCTAGTTTTGGCTTATGGATAGAAGTTTCACCGTTAGC
ATAAGCTATTTTCGGTAGTGGCAGGTGGTTGATCCTACAGGTTGAGTTTA
AATCCCTGATGTTACAGTAGGGGAGATTGTTAGCCTAATTATGTTAACCT
CAATTATTGTTGAGTTTAATGTCCAGAGTCTCGATCCGTAGTGCTTATAT
TGGGTGCAACACCTCGTTGTTCGATCCATCTTTTGGAATCAAAATGAGGA
AATGAAAGTTCCATCCTCAATAGCCTACTTAAACTTTCCTAGAAAGGTTT
CTCCTAGCTGTCATTTACTAGTTTTTCAATTTGCATAGTTGCGAAATTGA
AGTGTCAGTGTCAGTGTCAGAATTCTGCATTTGTACTACAAGATCCAAAC
AATTGGCATGTTTTTTAGTAGCACATCTCATAAACTCACTGGGGGTTCCT
ATCAGACCCAAAATTCAGAGCATTTCTGCAGAAGTTTTTAAATGCTGTGG
TTAACTGATGCTTTTAGATGGACATTACTCGATTTTAATGTCCCACCCTC
ACACCACCACCACCACCAAAGTAAATAAATACCGAAAACTATTGTTCTAA
TGTTTTTTATTTTTATTATTGTTAGTATTTTGTTAATGGGATGAGTTGAA
CCAAAAATTTCTTTCACCCTCTCTTCTGACTTTAGCACTAAGTCACTTTA
TAACTCCTTTATTGCTCGTATTTTAACACGTTTTTACCCCCAATGATTTG
ATCAGGTGAATGATGAACTTTGCAAGGAGAATCTGCAGCTTGCTGGTGAG
TTATTGAATTCTTTTCGTTGTGACGATGCCATCAGATGGCTAGCTGCCAG
CTGAATATTTTAGATCATCTCAAACACTTTATTTTAAATTCAGAGGAAAA
TCTACGAAAAGAACCTCGCATTGTGGAACTCAGGAACCAGGTATGATCAT
AATCCTAATATTTGTTTGATTATATTCTAAAGTGAGCACGAATTTGACCC
CTTTCATATGGAAACAGTATAGAATAATTTGTACGACTGAGTTAGCTGCT
GCTCAAGAGAAATTAAACGAGCTTTACAGGGAGAAAGAAAAAATAATTAA
GTTGAATTCCCCACTGTACCTTCTCCAAAGGATTCAAGGTATGAATTGAC
ACGGTGACTTTCTCTCATAAACATAACTACTGTAATCACGAAAATTTATC
TTTATGACCTGCTTGGTTTCGTAATATCTTATAATGATTCTGCAGATGCT
ATGAATAAGACAGATGAGGAATCCGAAAATCTGCACCATCAATTCCTTGA
CAGAGAGATTGAACTTGGAGCCTTTTTGCAGAAATACAAAAAACTACGTA
GCGCTTACCACAGGAAAAGTCTAATAAATCTTGCAGCTAAAACATCAAAT
ATCTGAACATCACATAAGAATATCCAGAATTAGGAATGTAACTTGTTTGT
AGAGCCTCTAATTGATTTTCTGTTCGTTCTTGCCAATACAGTAGTCATAT
ATGTCAATATTTAAGTAGTTTCAGACCATCTGAAAAATAGTACACAATCT
TCTCTTATTTGGCTCCTGCGTTATTTTCATCAATAAGATTTTCCAAAGGC
TATGTGTTGTATTGTAATTATCATCGCTATTATAGGATCCAACTTGTGTT
TGAAGTGTCTGGACATGTGAAAATAATGCGTTGTGCTTTTTCATAAAGGA
AAGTTAAATTTCATCT back to topCoding sequence (CDS) from alignment at Vu07:7378112..7381077+ >Vigun07g063700.1_Vu_IT97K-499-35_v1.1 ID=Vigun07g063700.1_Vu_IT97K-499-35_v1.1; Name=Vigun07g063700.1; organism=Vigna unguiculata; type=CDS; length=549bp; location=Sequence derived from: Vu07:7378112..7381077+ (Vigna unguiculata
ATGTCCACTAGATTCCGGGGATCACAGGAACACCAACATGGTTCTTCTTC
CACCACCCATGATGGACCTGTTGCTACTTTGAAGAATAAAAGTGTTGATG
AGTTGCGGAAGCTTTTGTCTAACAAAGACGCATATCAGCAGTTTTTACAT
TCACTGGAGGAGGTCAAGATTCAAAATCATGTGAATGATGAACTTTGCAA
GGAGAATCTGCAGCTTGCTGAGGAAAATCTACGAAAAGAACCTCGCATTG
TGGAACTCAGGAACCAGTATAGAATAATTTGTACGACTGAGTTAGCTGCT
GCTCAAGAGAAATTAAACGAGCTTTACAGGGAGAAAGAAAAAATAATTAA
GTTGAATTCCCCACTGTACCTTCTCCAAAGGATTCAAGATGCTATGAATA
AGACAGATGAGGAATCCGAAAATCTGCACCATCAATTCCTTGACAGAGAG
ATTGAACTTGGAGCCTTTTTGCAGAAATACAAAAAACTACGTAGCGCTTA
CCACAGGAAAAGTCTAATAAATCTTGCAGCTAAAACATCAAATATCTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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