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Transcript Overview
| Name | Vigun08g011400.1 |
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| Unique Name | Vigun08g011400.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1258 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g011400.1 | Vigun08g011400.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun08g011400.1_Vu_IT97K-499-35_v1.1 | Vigun08g011400.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g011400.1.v1.1.five_prime_UTR.1 | Vigun08g011400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun08g011400.1.v1.1.CDS.1 | Vigun08g011400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g011400.1.v1.1.three_prime_UTR.1 | Vigun08g011400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
BLAST of Vigun08g011400.1 vs. DB:Swiss
Match: LON2_MYXXA (Lon protease 2 OS=Myxococcus xanthus OX=34 GN=lon2 PE=1 SV=3) HSP 1 Score: 57.7658 bits (138), Expect = 3.569e-8 Identity = 48/191 (25.13%), Postives = 85/191 (44.50%), Query Frame = 1
Query: 253 GAILPLQIFEFRYRIMMHTLLHTDLRFGVVYH-------DAVSGTSEVGCVGEVVKHERLVDDRFFLVCKGQERFRVNDVVRSKPYLVGRVTWLEDRPPENDAGDDAEALAREVEGYMKDVIRLSNRLGGKGEKEMGDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAKRLK-------REKETLK 783
G +LPL + + ++ + D GVV + +G V +VK ++ +D + LV +G RFRV ++V+ PYL RV +ED+ + + EAL ++ ++VI L L + + + P + + + + E+QA+LE D R+K R++E LK
Sbjct: 46 GGVLPLAVGRQKTIALIKDAVRDDQVIGVVTQRRAEEEDPGAADLYTMGTVARIVKLLKMGEDNYSLVVQGLARFRVVELVQEAPYLKARVDAVEDKTSSENV--EVEALGINLKKLAREVIELMPELPAAATELVESITH---PGHLADLIAANVDVPIEEKQAVLETVDLKARMKLVLELLNRKREILK 231
BLAST of Vigun08g011400.1 vs. DB:Swiss
Match: LON_ANADE (Lon protease OS=Anaeromyxobacter dehalogenans (strain 2CP-C) OX=290397 GN=lon PE=3 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.257e-7 Identity = 48/191 (25.13%), Postives = 86/191 (45.03%), Query Frame = 1
Query: 253 GAILPLQIFEFRYRIMMHTLLHTDLRFGVVYH-------DAVSGTSEVGCVGEVVKHERLVDDRFFLVCKGQERFRVNDVVRSKPYLVGRVTWLEDRPPENDAGDDAEALAREVEGYMKDVIRLSNRLGGKGEKEMGDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTAKRLK-------REKETLK 783
G +LPL + + ++ + + GVV + VG V VVK ++ +D + LV +G RF+V ++V+ PYL R+ +EDR +D + EALA ++ ++VI L L + + + P + + + + E+Q +LE + R+K R++E LK
Sbjct: 55 GGVLPLAVGRQKTIALIKDAVRDEQVIGVVTQRRAEEEDPGAADLYTVGTVARVVKLLKMGEDNYSLVVQGLARFKVLELVQESPYLKARIEAVEDRSVVDDV--EVEALAINLKKLAREVIELMPELPAAATELVESITH---PGHLADLIAANVDVPIEEKQQVLETVELKARMKLVLELLNRKREILK 240
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | COILS | Coil | Coil | coord: 236..270 |
| None | No IPR available | COILS | Coil | Coil | coord: 184..204 |
| None | No IPR available | GENE3D | 2.30.130.40 | | coord: 59..172
e-value: 1.4E-29
score: 104.0 |
| IPR003111 | Lon, substrate-binding domain | SMART | SM00464 | lon_5 | coord: 72..262
e-value: 1.2E-27
score: 107.8 |
| IPR003111 | Lon, substrate-binding domain | PFAM | PF02190 | LON_substr_bdg | coord: 72..261
e-value: 3.4E-26
score: 92.4 |
| IPR003111 | Lon, substrate-binding domain | PROSITE | PS51787 | LON_N | coord: 73..262
score: 23.539 |
| IPR015947 | PUA-like superfamily | SUPERFAMILY | 88697 | PUA domain-like | coord: 72..261 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g011400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g011400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g011400.1; organism=Vigna unguiculata; type=mRNA; length=1258bp
TTTCTCTATCCAATCCAAACATAAAACATTAATAACAAAGATCATTCCAA
AGGATGTTCTTTCACTCTCTCAACTCCAAAAATCACCAAAACAATGCCAC
AAAAAAACCACACAAACACAAACTAAATCATGCAATGCAATCCCTGTCTC
CCTTCTTCTAAACCAAACACAAAAATGGCATCTTTCCCAATGCCACACCT
CCTACCATGCACTTCTCTCCCTCACACAACCACCACCGCCGCCGCCGCCA
ATATATTCTTACCCTCCTCTCTCTTCCGCCGTCGCCGGACTCTCCACTCT
CTCCGCTGCTCCGCCTCCGACAAGCCGCAAGACGACGCCGTCGAGCTGCC
TCTCTTCCCTCTCCCTCTCGTCCTCTTTCCGGGCGCGATCCTCCCTCTGC
AGATCTTCGAGTTCCGCTACCGCATCATGATGCACACGCTCCTCCACACC
GACCTCCGCTTCGGCGTCGTCTACCACGACGCCGTATCCGGCACCTCGGA
AGTGGGCTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACC
GCTTCTTCCTGGTCTGCAAAGGGCAGGAGAGGTTCCGCGTCAACGACGTC
GTCCGCAGCAAACCCTACCTCGTGGGACGCGTCACGTGGCTGGAGGACCG
CCCGCCGGAGAACGACGCCGGAGACGACGCGGAGGCGCTGGCCCGCGAGG
TGGAGGGGTACATGAAGGACGTCATACGCCTCTCGAACCGGTTGGGAGGG
AAAGGTGAGAAGGAGATGGGGGATTTGAGACGGAACCTCTTTCCGACGCC
GTTTTCGTTCTTCGTCGGAAGCACCTTCGAGGGTGCTCCCAGGGAGCAGC
AGGCGCTGTTGGAACTGGAGGACACGGCGAAGAGGTTGAAGAGAGAGAAA
GAGACGCTCAAGAACACGCTTAACTATCTCACTGCTGCTTCTGCTGTCAA
AGATGCTTTTCCTTCTTCTTGATtcatcaccatcgtcatcatcatcatca
tcatcaATACCTTATAAATTTTGATGCTTCACGTTTCATGCTTTATATTT
GTTCATAATCACTGCTTAATTAATGATAGTAGATATAGTTTTTCAGCTCC
TAATATTCCACCATGTCATATAGATCAATGTGCCATTACTAATAAATATA
GCATGTTTTGGTTGGAATGTCAATGAACTTGGAGTGTGCTGTTTGAGGTT
TTTGGATCTGAATTTGTAAATATTTAGAAAACAGAAGAAACCAGTTCCGA
AAGAAAAG back to topprotein sequence of Vigun08g011400.1_Vu_IT97K-499-35_v1.1 >Vigun08g011400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g011400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g011400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=281bp
MQCNPCLPSSKPNTKMASFPMPHLLPCTSLPHTTTTAAAANIFLPSSLFR
RRRTLHSLRCSASDKPQDDAVELPLFPLPLVLFPGAILPLQIFEFRYRIM
MHTLLHTDLRFGVVYHDAVSGTSEVGCVGEVVKHERLVDDRFFLVCKGQE
RFRVNDVVRSKPYLVGRVTWLEDRPPENDAGDDAEALAREVEGYMKDVIR
LSNRLGGKGEKEMGDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTA
KRLKREKETLKNTLNYLTAASAVKDAFPSS* back to topmRNA from alignment at Vu08:999488..1000745- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g011400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g011400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g011400.1; organism=Vigna unguiculata; type=mRNA; length=1258bp; location=Sequence derived from: Vu08:999488..1000745- (Vigna unguiculata
TTTCTCTATCCAATCCAAACATAAAACATTAATAACAAAGATCATTCCAA
AGGATGTTCTTTCACTCTCTCAACTCCAAAAATCACCAAAACAATGCCAC
AAAAAAACCACACAAACACAAACTAAATCATGCAATGCAATCCCTGTCTC
CCTTCTTCTAAACCAAACACAAAAATGGCATCTTTCCCAATGCCACACCT
CCTACCATGCACTTCTCTCCCTCACACAACCACCACCGCCGCCGCCGCCA
ATATATTCTTACCCTCCTCTCTCTTCCGCCGTCGCCGGACTCTCCACTCT
CTCCGCTGCTCCGCCTCCGACAAGCCGCAAGACGACGCCGTCGAGCTGCC
TCTCTTCCCTCTCCCTCTCGTCCTCTTTCCGGGCGCGATCCTCCCTCTGC
AGATCTTCGAGTTCCGCTACCGCATCATGATGCACACGCTCCTCCACACC
GACCTCCGCTTCGGCGTCGTCTACCACGACGCCGTATCCGGCACCTCGGA
AGTGGGCTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACC
GCTTCTTCCTGGTCTGCAAAGGGCAGGAGAGGTTCCGCGTCAACGACGTC
GTCCGCAGCAAACCCTACCTCGTGGGACGCGTCACGTGGCTGGAGGACCG
CCCGCCGGAGAACGACGCCGGAGACGACGCGGAGGCGCTGGCCCGCGAGG
TGGAGGGGTACATGAAGGACGTCATACGCCTCTCGAACCGGTTGGGAGGG
AAAGGTGAGAAGGAGATGGGGGATTTGAGACGGAACCTCTTTCCGACGCC
GTTTTCGTTCTTCGTCGGAAGCACCTTCGAGGGTGCTCCCAGGGAGCAGC
AGGCGCTGTTGGAACTGGAGGACACGGCGAAGAGGTTGAAGAGAGAGAAA
GAGACGCTCAAGAACACGCTTAACTATCTCACTGCTGCTTCTGCTGTCAA
AGATGCTTTTCCTTCTTCTTGATTCATCACCATCGTCATCATCATCATCA
TCATCAATACCTTATAAATTTTGATGCTTCACGTTTCATGCTTTATATTT
GTTCATAATCACTGCTTAATTAATGATAGTAGATATAGTTTTTCAGCTCC
TAATATTCCACCATGTCATATAGATCAATGTGCCATTACTAATAAATATA
GCATGTTTTGGTTGGAATGTCAATGAACTTGGAGTGTGCTGTTTGAGGTT
TTTGGATCTGAATTTGTAAATATTTAGAAAACAGAAGAAACCAGTTCCGA
AAGAAAAG back to topCoding sequence (CDS) from alignment at Vu08:999488..1000745- >Vigun08g011400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g011400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g011400.1; organism=Vigna unguiculata; type=CDS; length=843bp; location=Sequence derived from: Vu08:999488..1000745- (Vigna unguiculata
ATGCAATGCAATCCCTGTCTCCCTTCTTCTAAACCAAACACAAAAATGGC
ATCTTTCCCAATGCCACACCTCCTACCATGCACTTCTCTCCCTCACACAA
CCACCACCGCCGCCGCCGCCAATATATTCTTACCCTCCTCTCTCTTCCGC
CGTCGCCGGACTCTCCACTCTCTCCGCTGCTCCGCCTCCGACAAGCCGCA
AGACGACGCCGTCGAGCTGCCTCTCTTCCCTCTCCCTCTCGTCCTCTTTC
CGGGCGCGATCCTCCCTCTGCAGATCTTCGAGTTCCGCTACCGCATCATG
ATGCACACGCTCCTCCACACCGACCTCCGCTTCGGCGTCGTCTACCACGA
CGCCGTATCCGGCACCTCGGAAGTGGGCTGCGTCGGGGAGGTGGTGAAGC
ACGAGCGCCTCGTCGACGACCGCTTCTTCCTGGTCTGCAAAGGGCAGGAG
AGGTTCCGCGTCAACGACGTCGTCCGCAGCAAACCCTACCTCGTGGGACG
CGTCACGTGGCTGGAGGACCGCCCGCCGGAGAACGACGCCGGAGACGACG
CGGAGGCGCTGGCCCGCGAGGTGGAGGGGTACATGAAGGACGTCATACGC
CTCTCGAACCGGTTGGGAGGGAAAGGTGAGAAGGAGATGGGGGATTTGAG
ACGGAACCTCTTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGCACCTTCG
AGGGTGCTCCCAGGGAGCAGCAGGCGCTGTTGGAACTGGAGGACACGGCG
AAGAGGTTGAAGAGAGAGAAAGAGACGCTCAAGAACACGCTTAACTATCT
CACTGCTGCTTCTGCTGTCAAAGATGCTTTTCCTTCTTCTTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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