Vigun08g017500.4
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Vigun08g017500.4 vs. DB:Swiss
Match: PX11A_ARATH (Peroxisomal membrane protein 11A OS=Arabidopsis thaliana OX=3702 GN=PEX11A PE=1 SV=1) HSP 1 Score: 305.834 bits (782), Expect = 4.421e-104 Identity = 150/236 (63.56%), Postives = 191/236 (80.93%), Query Frame = 1
Query: 85 RDLLNHVEAYLAKRDGVDKLLKISRYATKLILASSLLQSSDNPALNHRLKSFESSVGVSRKAFRLGKFVQDLNALRASHVHSNRHLLFTLLAYGGEGFYYFVEQFVWLAKSGLIDPKHARAFQKVSAWAELVGYIGSVALKLTDLNTIAEEESCLASSVEISRLRGVGCVEEDYRLRKLREKKIMKRLSVVQDLADAVMAVDDILDGNGPFSKPVFMASAGLLSALISTHKNWVSC 792
RD LNH+E YL+KRDGVDKLLKISRYATK+ILASSL+ + ++ RLKSFESSVGVSRKAFRLGKFVQD+NALR+S SN L+ ++AYGGEG YYFVEQF+WL KSGLID KH++ QK+SAWAELVGY+GSV++K+ DL + +EESC+AS++EIS RG+ C ED +++ ++EKK +K LS++QDLAD +M + DI DG G S P ++SAGL SA++STHKNW+SC
Sbjct: 15 RDFLNHLETYLSKRDGVDKLLKISRYATKIILASSLIP--ETRSIIPRLKSFESSVGVSRKAFRLGKFVQDINALRSSRWDSNHELVLLIIAYGGEGLYYFVEQFIWLTKSGLIDAKHSKWLQKISAWAELVGYVGSVSIKIRDLRKLNDEESCVASTIEISVSRGLACDGEDEKMKMIKEKKTLKVLSILQDLADGLMTIADIRDGKGVLSAPNVISSAGLFSAIVSTHKNWISC 248
BLAST of Vigun08g017500.4 vs. DB:Swiss
Match: PX113_ORYSJ (Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica OX=39947 GN=PEX11-3 PE=2 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 7.771e-79 Identity = 142/236 (60.17%), Postives = 170/236 (72.03%), Query Frame = 1
Query: 85 RDLLNHVEAYLAKRDGVDKLLKISRYATKLILASSLLQSSDNPALNHRLKSFESSVGVSRKAFRLGKFVQDLNALRASHVHSNRHLLFTLLAYGGEGFYYFVEQFVWLAKSGLIDPKHARAFQKVSAWAELVGYIGSVALKLTDLNTIAEEESCLASSVEISRLRGVGCVEEDYRLRKLREKKIMKRLSVVQDLADAVMAVDDILDGNGPFSKPVFMASAGLLSALISTHKNWVSC 792
RD L HVEAYL++RDGVDKLLKISRYA +L LA+ L PA + RLKSFESSVG+SRKAFRLGKFVQ++NALRA H + LLAYGGEG YYF+EQFVWLAK+GL+ Q++SAWAEL+GY+GS+ +KL EE L SSV++ RL+ GC EE +R LR K ++KR+SVVQD+ADAVMA+ D+ DG G MASAGLLSALIS HKNW SC
Sbjct: 23 RDFLVHVEAYLSRRDGVDKLLKISRYAARLALAAGPLP----PAASARLKSFESSVGLSRKAFRLGKFVQNVNALRA---HPHPPPAVALLAYGGEGVYYFLEQFVWLAKAGLLPAHLLPRLQRLSAWAELLGYVGSITIKL-------EEIGKLESSVKM-RLK-EGCREESDVVRTLRVKLLLKRMSVVQDVADAVMALGDVTDGKGLLGSSTLMASAGLLSALISAHKNWNSC 242
BLAST of Vigun08g017500.4 vs. DB:Swiss
Match: PX113_ORYSI (Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica OX=39946 GN=PEX11-3 PE=2 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 7.771e-79 Identity = 142/236 (60.17%), Postives = 170/236 (72.03%), Query Frame = 1
Query: 85 RDLLNHVEAYLAKRDGVDKLLKISRYATKLILASSLLQSSDNPALNHRLKSFESSVGVSRKAFRLGKFVQDLNALRASHVHSNRHLLFTLLAYGGEGFYYFVEQFVWLAKSGLIDPKHARAFQKVSAWAELVGYIGSVALKLTDLNTIAEEESCLASSVEISRLRGVGCVEEDYRLRKLREKKIMKRLSVVQDLADAVMAVDDILDGNGPFSKPVFMASAGLLSALISTHKNWVSC 792
RD L HVEAYL++RDGVDKLLKISRYA +L LA+ L PA + RLKSFESSVG+SRKAFRLGKFVQ++NALRA H + LLAYGGEG YYF+EQFVWLAK+GL+ Q++SAWAEL+GY+GS+ +KL EE L SSV++ RL+ GC EE +R LR K ++KR+SVVQD+ADAVMA+ D+ DG G MASAGLLSALIS HKNW SC
Sbjct: 23 RDFLVHVEAYLSRRDGVDKLLKISRYAARLALAAGPLP----PAASARLKSFESSVGLSRKAFRLGKFVQNVNALRA---HPHPPPAVALLAYGGEGVYYFLEQFVWLAKAGLLPAHLLPRLQRLSAWAELLGYVGSITIKL-------EEIGKLESSVKM-RLK-EGCREESDVVRTLRVKLLLKRMSVVQDVADAVMALGDVTDGKGLLGSSTLMASAGLLSALISAHKNWNSC 242
BLAST of Vigun08g017500.4 vs. DB:Swiss
Match: PX112_ORYSJ (Peroxisomal membrane protein 11-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PEX11-2 PE=2 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.620e-67 Identity = 120/239 (50.21%), Postives = 158/239 (66.11%), Query Frame = 1
Query: 85 RDLLNHVEAYLAKRDGVDKLLKISRYATKLILASSLLQSSDNPALNHRLKSFESSVGVSRKAFRLGKFVQDLNALRAS--HVHSNRHLLFTLLAYGGEGFYYFVEQFVWLAKSGLIDPK-HARAFQKVSAWAELVGYIGSVALKLTDLNTIAEEESCLASSVEISRLRGVGCVEEDYRLRKLREKKIMKRLSVVQDLADAVMAVDDILDGNGPFSKPVFMASAGLLSALISTHKNWVSC 792
RD+L H+EAYL++RDGVD LLK+S YA +L LA + Q A RL+SFESSVG+SRKAFRLGKFVQ +NALRA+ H H + H L LLAYGG+G Y F+EQF WLAK+GL+ + R ++ WA+L+ ++GS+A+KL + +AE E + + +E GC EE +R L K ++K +S+VQD+ D+ M V D+ G MASAGLLSALIS HKNW SC
Sbjct: 25 RDILVHIEAYLSRRDGVDNLLKVSLYAARLALALAAGQPPLPHAATARLRSFESSVGLSRKAFRLGKFVQSINALRAAAYHPHPHVHPLLVLLAYGGQGVYNFLEQFAWLAKAGLLPARLLPRRLHRIGVWAQLLAHVGSIAIKLEE---VAELECGVEARLE------EGCGEESEVVRTLSRKLLLKLMSLVQDMVDSAMTVGDVTGRKGLLGSSTLMASAGLLSALISVHKNWNSC 254
BLAST of Vigun08g017500.4 vs. DB:Swiss
Match: PX114_ORYSJ (Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica OX=39947 GN=PEX11-4 PE=2 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 5.579e-34 Identity = 77/234 (32.91%), Postives = 128/234 (54.70%), Query Frame = 1
Query: 88 DLLNHVEAYLAKRDGVDKLLKISRYATKLILASSLLQSSDNPALNHRLKSFESSVGVSRKAFRLGKFVQDLNALRASHVHSNRHLLFTLLAYGGEGFYYFVEQFVWLAKSGLIDPKHARAFQKVSAWAELVGYIGSVALKLTDLNTIAEEESCLASSVEISRLRGVGCVEEDYRLRKLREKKIMKRLSVVQDLADAVMAVDDILDGNGPFSKPVFMASAGLLSALISTHKNWVS 789
D L+ + +LAKRDG+DKL+K +Y +KL + S +P L R K++E+S G+SRKAFR G+F+ LN LR + +LA GE Y+F + F WL++ G++D AR +SA+ E VGY+ +A+ L + +E L G ++D ++K+R ++M+ ++ ++AD V+ + DI + N + V + +GL+SA ++NW S
Sbjct: 5 DTLDKLVVFLAKRDGIDKLVKTFQYVSKL---AHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFLTGLNGLRRA---PGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARRMSFISAFGESVGYVFFIAMDLIMIRRGLRQERKLLRE---------GGKDKDKEVKKIRMDRVMRLMATAANVADLVIGIADI-EPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
BLAST of Vigun08g017500.4 vs. DB:Swiss
Match: PX114_ORYSI (Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. indica OX=39946 GN=PEX11-4 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 5.579e-34 Identity = 77/234 (32.91%), Postives = 128/234 (54.70%), Query Frame = 1
Query: 88 DLLNHVEAYLAKRDGVDKLLKISRYATKLILASSLLQSSDNPALNHRLKSFESSVGVSRKAFRLGKFVQDLNALRASHVHSNRHLLFTLLAYGGEGFYYFVEQFVWLAKSGLIDPKHARAFQKVSAWAELVGYIGSVALKLTDLNTIAEEESCLASSVEISRLRGVGCVEEDYRLRKLREKKIMKRLSVVQDLADAVMAVDDILDGNGPFSKPVFMASAGLLSALISTHKNWVS 789
D L+ + +LAKRDG+DKL+K +Y +KL + S +P L R K++E+S G+SRKAFR G+F+ LN LR + +LA GE Y+F + F WL++ G++D AR +SA+ E VGY+ +A+ L + +E L G ++D ++K+R ++M+ ++ ++AD V+ + DI + N + V + +GL+SA ++NW S
Sbjct: 5 DTLDKLVVFLAKRDGIDKLVKTFQYVSKL---AHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFLTGLNGLRRA---PGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARRMSFISAFGESVGYVFFIAMDLIMIRRGLRQERKLLRE---------GGKDKDKEVKKIRMDRVMRLMATAANVADLVIGIADI-EPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
BLAST of Vigun08g017500.4 vs. DB:Swiss
Match: PX11B_ARATH (Peroxisomal membrane protein 11B OS=Arabidopsis thaliana OX=3702 GN=PEX11B PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 6.480e-23 Identity = 67/235 (28.51%), Postives = 118/235 (50.21%), Query Frame = 1
Query: 88 DLLNHVEAYLAKRDGVDKLLKISRYATKLILASSLLQSSDNPALNHRLKSFESSVGVSRKAFRLGKFVQDLNALRASHVHSNRHLLFTLLAYGGEGFYYFVEQFVWLAKSGLIDPKHARAFQKVSAWAELVGYIGSVALKLTDLNTIAEEESCLASSVEISRLRGVGCVEEDYRLRKLREKKIMKRLSVVQDLADAVMAVDDILDGNGPFSK-PVFMASAGLLSALISTHKNWVS 789
D ++ + +LAKRDG+DKL+K +Y KL + + P R K +E + G+SRKAFR G+ + NALR + + +LA GE Y+F + F+WL++ G ID K A+ +SA+ E GY + + + + L S + + E ++ ++R +M+ + + ++AD ++A+ +I PF + + +GL+SA ++NW S
Sbjct: 4 DTVDKLVVFLAKRDGIDKLVKTFQYVAKL---ACWHVEATRPEAADRFKKWEVASGLSRKAFRTGRSLTGFNALRRNPGATPMIRFLAVLANSGEMVYFFFDHFLWLSRIGSIDAKLAKKMSFISAFGESFGYTFFIIIDCIFIKQRLKSLKKLQHSTDEPK------EEIGAKISEIRGDIVMRLMGISANVADLLIALAEI--HPNPFCNHTITLGISGLVSAWAGWYRNWPS 227
BLAST of Vigun08g017500.4 vs. DB:Swiss
Match: PX11D_ARATH (Peroxisomal membrane protein 11D OS=Arabidopsis thaliana OX=3702 GN=PEX11D PE=1 SV=2) HSP 1 Score: 53.5286 bits (127), Expect = 3.288e-7 Identity = 65/243 (26.75%), Postives = 102/243 (41.98%), Query Frame = 1
Query: 85 RDLLNHVEAYLAKRDGVDKLLKISRYATKLILASSLLQSSDNPALNHRLKSFESSVGVSRKAFRLGKFVQDLNALRASHVHSNRHLLFTLLAYGGEGF---YYFVEQFVWLAKSGLIDPKHARAFQKVSAWAELVGYI-------GSVALKLTDLNTIAEEESCLASSVEISRLRGVGCVEEDYR--LRKLREKKIMKRLSVVQDLADAVMAVDDILDGNGPFSKPVFMASAGLLSALISTHK 777
R L V YL K + DKL + +Y +K + S P + + S ++RK FRL KFV DL+ L S V L LL + F++Q VWL +SG+ K AEL+G I SV L ++ + S + +E G +EDYR L+K E+ L++++ D V+A +L P + G ++++IS ++
Sbjct: 9 RAELALVVMYLNKAEARDKLCRAIQYGSKFL-------SGGQPGTAQNV---DKSTSLARKVFRLFKFVNDLHGL-ISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKER---------AELLGRISLFCWMGSSVCTTLVEVGEMGRLSSSM-KKIEKGLKNGNKYQDEDYRAKLKKSNERS----LALIKSAMDIVVAA-GLLQLAPTKITPRVTGAFGFITSIISCYQ 225 The following BLAST results are available for this feature:
BLAST of Vigun08g017500.4 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 8
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g017500.4_Vu_IT97K-499-35_v1.1 ID=Vigun08g017500.4_Vu_IT97K-499-35_v1.1; Name=Vigun08g017500.4; organism=Vigna unguiculata; type=mRNA; length=1916bpback to top protein sequence of Vigun08g017500.4_Vu_IT97K-499-35_v1.1 >Vigun08g017500.4_Vu_IT97K-499-35_v1.1 ID=Vigun08g017500.4_Vu_IT97K-499-35_v1.1; Name=Vigun08g017500.4_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=265bpback to top mRNA from alignment at Vu08:1470842..1475060- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun08g017500.4_Vu_IT97K-499-35_v1.1 ID=Vigun08g017500.4_Vu_IT97K-499-35_v1.1; Name=Vigun08g017500.4; organism=Vigna unguiculata; type=mRNA; length=4219bp; location=Sequence derived from: Vu08:1470842..1475060- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu08:1470842..1475060- >Vigun08g017500.4_Vu_IT97K-499-35_v1.1 ID=Vigun08g017500.4_Vu_IT97K-499-35_v1.1; Name=Vigun08g017500.4; organism=Vigna unguiculata; type=CDS; length=795bp; location=Sequence derived from: Vu08:1470842..1475060- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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