|
|
Transcript Overview
| Name | Vigun08g030800.1 |
|---|
| Unique Name | Vigun08g030800.1_Vu_IT97K-499-35_v1.1 |
|---|
| Type | mRNA |
|---|
| Organism | Vigna unguiculata (cowpea) |
|---|
| Sequence length | 885 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g030800.1 | Vigun08g030800.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun08g030800.1_Vu_IT97K-499-35_v1.1 | Vigun08g030800.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g030800.1.v1.1.CDS.1 | Vigun08g030800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 27..46 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 192..222 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 98..141 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 110..129 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 201..222 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g030800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g030800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g030800.1; organism=Vigna unguiculata; type=mRNA; length=885bp
ATGCATACGCTGAGCCCTTTTGTTTGTGGCACTTTCCATAACGAATACGA
TGATGATGATTCGTGTCTTGCAAGTCCTCTCTCTAGCCCCAGAAAATATA
AGAGAAAAGATAGCAAAAACAACCCTTATTCTAGTCGTGGTCTTGACAAG
TTTTCTGAGCTTTTGGCTGATCTTGATGAGAAGAGGCAGAAGATTTATTC
ACAGACGAACCCTCATGACATCTCTTTCGTTCGCTTTGTGTATTCCAACA
CCGATGATATTGTTCCTGTGGTGGTCAAGGTCAAGAAAAACAACAAGGAT
CACAAACACCAGAGCCAAGAACTCAAAGGGGTGAGATCAAGAACAACAAC
GTTGACTCAAACCTCCGAGTCAATGGTAACTGATACTGaagaaagaaata
atcaaccgaagatagaaaaaaatcaaggaaagaaCTTTTCTTGGGATATG
GGGAAGCCTTCTTTCTATTTGCCAGTGGTTATGGTGTTGATTTTGTTGCT
GTTGGTTGTGTTTGGAAGATCTGCTACAACTGTTTATACGTGTGTTTTGT
GGTATGTGATTTCCACTGTGAAGAGTGGTTCACCATCATCAAACACAAGG
AGTTCAACGAAGAAGAAGAAGGATGGTGTTGGAGAATTGAGTGAAAAGAA
GAATAATGTGATGAACAATGAAAGGGTGAAGAAGAAGGAGTATGTGAGAG
GGTGGAGTGAGAAGAAGATGGTGGTGAATGAAGGGATTAAGAAGAAAGAT
TATGTGAGAGGGTGGAGTGAAAAAAAGATGGTAACTGGTTGTTTACTTTC
TCCAAAAAGTGGTGCTGATTCTGAGGCTTTGAAGAACAAGGTTCAACAAG
CACACATTCACATAAGCAAAGCTGGTGAAGAATGA back to topprotein sequence of Vigun08g030800.1_Vu_IT97K-499-35_v1.1 >Vigun08g030800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g030800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g030800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=295bp
MHTLSPFVCGTFHNEYDDDDSCLASPLSSPRKYKRKDSKNNPYSSRGLDK
FSELLADLDEKRQKIYSQTNPHDISFVRFVYSNTDDIVPVVVKVKKNNKD
HKHQSQELKGVRSRTTTLTQTSESMVTDTEERNNQPKIEKNQGKNFSWDM
GKPSFYLPVVMVLILLLLVVFGRSATTVYTCVLWYVISTVKSGSPSSNTR
SSTKKKKDGVGELSEKKNNVMNNERVKKKEYVRGWSEKKMVVNEGIKKKD
YVRGWSEKKMVTGCLLSPKSGADSEALKNKVQQAHIHISKAGEE* back to topmRNA from alignment at Vu08:2824552..2825436- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g030800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g030800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g030800.1; organism=Vigna unguiculata; type=mRNA; length=885bp; location=Sequence derived from: Vu08:2824552..2825436- (Vigna unguiculata
ATGCATACGCTGAGCCCTTTTGTTTGTGGCACTTTCCATAACGAATACGA
TGATGATGATTCGTGTCTTGCAAGTCCTCTCTCTAGCCCCAGAAAATATA
AGAGAAAAGATAGCAAAAACAACCCTTATTCTAGTCGTGGTCTTGACAAG
TTTTCTGAGCTTTTGGCTGATCTTGATGAGAAGAGGCAGAAGATTTATTC
ACAGACGAACCCTCATGACATCTCTTTCGTTCGCTTTGTGTATTCCAACA
CCGATGATATTGTTCCTGTGGTGGTCAAGGTCAAGAAAAACAACAAGGAT
CACAAACACCAGAGCCAAGAACTCAAAGGGGTGAGATCAAGAACAACAAC
GTTGACTCAAACCTCCGAGTCAATGGTAACTGATACTGAAGAAAGAAATA
ATCAACCGAAGATAGAAAAAAATCAAGGAAAGAACTTTTCTTGGGATATG
GGGAAGCCTTCTTTCTATTTGCCAGTGGTTATGGTGTTGATTTTGTTGCT
GTTGGTTGTGTTTGGAAGATCTGCTACAACTGTTTATACGTGTGTTTTGT
GGTATGTGATTTCCACTGTGAAGAGTGGTTCACCATCATCAAACACAAGG
AGTTCAACGAAGAAGAAGAAGGATGGTGTTGGAGAATTGAGTGAAAAGAA
GAATAATGTGATGAACAATGAAAGGGTGAAGAAGAAGGAGTATGTGAGAG
GGTGGAGTGAGAAGAAGATGGTGGTGAATGAAGGGATTAAGAAGAAAGAT
TATGTGAGAGGGTGGAGTGAAAAAAAGATGGTAACTGGTTGTTTACTTTC
TCCAAAAAGTGGTGCTGATTCTGAGGCTTTGAAGAACAAGGTTCAACAAG
CACACATTCACATAAGCAAAGCTGGTGAAGAATGA back to topCoding sequence (CDS) from alignment at Vu08:2824552..2825436- >Vigun08g030800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g030800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g030800.1; organism=Vigna unguiculata; type=CDS; length=885bp; location=Sequence derived from: Vu08:2824552..2825436- (Vigna unguiculata
ATGCATACGCTGAGCCCTTTTGTTTGTGGCACTTTCCATAACGAATACGA
TGATGATGATTCGTGTCTTGCAAGTCCTCTCTCTAGCCCCAGAAAATATA
AGAGAAAAGATAGCAAAAACAACCCTTATTCTAGTCGTGGTCTTGACAAG
TTTTCTGAGCTTTTGGCTGATCTTGATGAGAAGAGGCAGAAGATTTATTC
ACAGACGAACCCTCATGACATCTCTTTCGTTCGCTTTGTGTATTCCAACA
CCGATGATATTGTTCCTGTGGTGGTCAAGGTCAAGAAAAACAACAAGGAT
CACAAACACCAGAGCCAAGAACTCAAAGGGGTGAGATCAAGAACAACAAC
GTTGACTCAAACCTCCGAGTCAATGGTAACTGATACTGAAGAAAGAAATA
ATCAACCGAAGATAGAAAAAAATCAAGGAAAGAACTTTTCTTGGGATATG
GGGAAGCCTTCTTTCTATTTGCCAGTGGTTATGGTGTTGATTTTGTTGCT
GTTGGTTGTGTTTGGAAGATCTGCTACAACTGTTTATACGTGTGTTTTGT
GGTATGTGATTTCCACTGTGAAGAGTGGTTCACCATCATCAAACACAAGG
AGTTCAACGAAGAAGAAGAAGGATGGTGTTGGAGAATTGAGTGAAAAGAA
GAATAATGTGATGAACAATGAAAGGGTGAAGAAGAAGGAGTATGTGAGAG
GGTGGAGTGAGAAGAAGATGGTGGTGAATGAAGGGATTAAGAAGAAAGAT
TATGTGAGAGGGTGGAGTGAAAAAAAGATGGTAACTGGTTGTTTACTTTC
TCCAAAAAGTGGTGCTGATTCTGAGGCTTTGAAGAACAAGGTTCAACAAG
CACACATTCACATAAGCAAAGCTGGTGAAGAATGA back to top
|
