Vigun08g040600.1

Transcript Overview
NameVigun08g040600.1
Unique NameVigun08g040600.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length713
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:4052130..4052842 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR372Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL093Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL097Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL061Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL427Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caivuL0583Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvuL0118Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0320Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0360Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0749Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0750Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL529Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL704Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vrvvuL383Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL448Vigna radiata cv. VC1973A genome v6.0Vigna radiata
avjvuL470Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL599Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL324Cicer arietinum
carvuL394Cicer arietinum
carvuL404Cicer arietinum
ccavuL327Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL433Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR660Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR669Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR677Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvuL227Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL238Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL242Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL253Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL302Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR463Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.03G250900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_03G01749.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.001G038500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cc_v2.0_11422.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014648823.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigst.03G157000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
LR48_mrnaVigan07g254500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Va07G065360.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g040600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g040600Vigun08g040600_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g040600.1Vigun08g040600.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g040600.1_Vu_IT97K-499-35_v1.1Vigun08g040600.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g040600.1.v1.1.five_prime_UTR.1Vigun08g040600.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g040600.1.v1.1.CDS.1Vigun08g040600.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g040600.1.v1.1.three_prime_UTR.1Vigun08g040600.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun08g040600.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g040600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g040600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g040600.1; organism=Vigna unguiculata; type=mRNA; length=713bp
GAGAGGAAGAAGGAAAGCTGGCAGCATGGTCTGTTTTAATTTCTTTTCTT
TTTGTGATAACCATTATCAATTAAACTTTTTTTCTCGAAAGATGAAAAGC
AAAAGCATATGTTTCTGCATCAGAGGGCGCCACAGGAAGAGAAAGGAAAG
CAAAGTGGAAGAGTTGGAGAAACATGTGAAGCCTAATTACAAGGTGAAAA
CCAAAGCAAGAGGTTTTGTTGGTGATGGTGGTGACAGCAATGTTGTTGAT
GGAGGCAGCATGGTTGGTAGCAATGAAGCTGTGATGAGTGTAGCTCATAT
GTTATTGATGAGTGGCAATGAAGATGGATGTGGGAATGGGCATCTGGGGG
AATCTGGGGCAGATGCTGCTGCTGCTGACTGATATGTCATACTCTGATGT
TTCTGTCAAACACTAAACTTTCATCTACTTTCTTAAATGTTTCTTTTTCG
TCTTCTTCTTTAACTGTGATGATTATATTTTAATGATACTTGTTGTGAAG
TTTCAATTTTGATAGGGAAGTATGACAAAAGCTAGTTTGAAGTTATCATT
CTTCTCATGCAAAGTTAACTGTGATGCTTGATTGCTACCTAAGGATTTGT
TTTGTTATGTCTGGAGTAAGACTTTTGAATCAGGGATCGTCCCTTATAAA
TGAGGAAAAGTGTGCAAAATCCTACCATGATACACTGGAATGATTGCATA
ACAATAATATTTA
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protein sequence of Vigun08g040600.1_Vu_IT97K-499-35_v1.1

>Vigun08g040600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g040600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g040600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=119bp
MVCFNFFSFCDNHYQLNFFSRKMKSKSICFCIRGRHRKRKESKVEELEKH
VKPNYKVKTKARGFVGDGGDSNVVDGGSMVGSNEAVMSVAHMLLMSGNED
GCGNGHLGESGADAAAAD*
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mRNA from alignment at Vu08:4052130..4052842+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g040600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g040600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g040600.1; organism=Vigna unguiculata; type=mRNA; length=713bp; location=Sequence derived from: Vu08:4052130..4052842+ (Vigna unguiculata
GAGAGGAAGAAGGAAAGCTGGCAGCATGGTCTGTTTTAATTTCTTTTCTT
TTTGTGATAACCATTATCAATTAAACTTTTTTTCTCGAAAGATGAAAAGC
AAAAGCATATGTTTCTGCATCAGAGGGCGCCACAGGAAGAGAAAGGAAAG
CAAAGTGGAAGAGTTGGAGAAACATGTGAAGCCTAATTACAAGGTGAAAA
CCAAAGCAAGAGGTTTTGTTGGTGATGGTGGTGACAGCAATGTTGTTGAT
GGAGGCAGCATGGTTGGTAGCAATGAAGCTGTGATGAGTGTAGCTCATAT
GTTATTGATGAGTGGCAATGAAGATGGATGTGGGAATGGGCATCTGGGGG
AATCTGGGGCAGATGCTGCTGCTGCTGACTGATATGTCATACTCTGATGT
TTCTGTCAAACACTAAACTTTCATCTACTTTCTTAAATGTTTCTTTTTCG
TCTTCTTCTTTAACTGTGATGATTATATTTTAATGATACTTGTTGTGAAG
TTTCAATTTTGATAGGGAAGTATGACAAAAGCTAGTTTGAAGTTATCATT
CTTCTCATGCAAAGTTAACTGTGATGCTTGATTGCTACCTAAGGATTTGT
TTTGTTATGTCTGGAGTAAGACTTTTGAATCAGGGATCGTCCCTTATAAA
TGAGGAAAAGTGTGCAAAATCCTACCATGATACACTGGAATGATTGCATA
ACAATAATATTTA
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Coding sequence (CDS) from alignment at Vu08:4052130..4052842+

>Vigun08g040600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g040600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g040600.1; organism=Vigna unguiculata; type=CDS; length=357bp; location=Sequence derived from: Vu08:4052130..4052842+ (Vigna unguiculata
ATGGTCTGTTTTAATTTCTTTTCTTTTTGTGATAACCATTATCAATTAAA
CTTTTTTTCTCGAAAGATGAAAAGCAAAAGCATATGTTTCTGCATCAGAG
GGCGCCACAGGAAGAGAAAGGAAAGCAAAGTGGAAGAGTTGGAGAAACAT
GTGAAGCCTAATTACAAGGTGAAAACCAAAGCAAGAGGTTTTGTTGGTGA
TGGTGGTGACAGCAATGTTGTTGATGGAGGCAGCATGGTTGGTAGCAATG
AAGCTGTGATGAGTGTAGCTCATATGTTATTGATGAGTGGCAATGAAGAT
GGATGTGGGAATGGGCATCTGGGGGAATCTGGGGCAGATGCTGCTGCTGC
TGACTGA
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