Vigun08g048200.2

Transcript Overview
NameVigun08g048200.2
Unique NameVigun08g048200.2_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1410
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:5365695..5367282 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR371Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL096Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuL490Pisum sativum Cameor genome v1aPisum sativum
psvuL632Pisum sativum Cameor genome v1aPisum sativum
pvvuL061Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL426Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL784Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL331Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0468Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0469Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0489Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL414Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0798Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL0928Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0120Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0315Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0361Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0751Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL528Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL704Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR587Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR620Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL307Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL285Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuL415Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuL427Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL382Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL440Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL401Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL577Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR397Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR408Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL300Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL385Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL468Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL599Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL318Cicer arietinum
carvuL401Cicer arietinum
ccavuL328Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL425Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR667Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR677Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR677Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR708Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL235Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL252Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL302Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL056Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL690Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR461Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g048200Vigun08g048200_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g048200.2Vigun08g048200.2_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g048200.2_Vu_IT97K-499-35_v1.1Vigun08g048200.2_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g048200.2.v1.1.five_prime_UTR.1Vigun08g048200.2.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR
Vigun08g048200.2.v1.1.five_prime_UTR.2Vigun08g048200.2.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g048200.2.v1.1.CDS.1Vigun08g048200.2.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g048200.2.v1.1.three_prime_UTR.1Vigun08g048200.2.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun08g048200.2 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012876Protein of unknown function DUF1677, plantPFAMPF07911DUF1677coord: 15..104
e-value: 2.4E-34
score: 117.6

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g048200.2_Vu_IT97K-499-35_v1.1 ID=Vigun08g048200.2_Vu_IT97K-499-35_v1.1; Name=Vigun08g048200.2; organism=Vigna unguiculata; type=mRNA; length=1410bp
AGAAATCTCTTCAAACCAGAAGTAACAGCACAGTACACCGAGTAAAACCc
aaccataacaaataacaaataaacaacaattttaaaaacaaacaaTTGCG
ACATTAGCAGTAAATGGTAATTTCCAATCCCACCGAACCCTCCAATGATT
GGGAAATTTTTTCCCTTTTCGATATAAATAAATTGCAAAGCAACACAAAG
ATCTGCATCTCGGCATCTATATCTATCCACACATCCACACCCTTCTGCCT
CAATCCTCGTCACACACAAAACACAACACTCTCACATGTTGTGGACCAAA
CCCAGATCCATCACTCACAAAACCAGTAATTATTGATTTTGTGTTCGTGT
TGGATTCGGTTTCACCAATTTGTCCAAGAGAGCCCGTGAAGGGTCTGTGA
TGTACCATAAGCTGTTCGAGCTTTTGTTTTTGTTTTTCGGCGGCGAGAAG
GTTGAAGAGACCCAGTGGGAGAAGGAGCGATAAACCACATCAATATTCTT
CTAGATCTTTCCATTGTTTCTATTCATCTTCCACTTCTGATTATTCGGGT
GTTGAAAGAGACGAAGTCGATGACGGCGGTGGAGATGGTGGCGGAACCGG
CGGAGGCGGCTGTGACGGCTGTGAAGTGCTGCTGCTGCGCGTTGGTGGAG
GAGTGCACGCAGGCGTACATTGGGCGCGTGAAGGAGAGGTACGGTGGGCG
TTGGATTTGTGGGCTGTGTTCGGAGGCAGTGAAAGAAGAGAGGGAGAGAG
AGAAAATCATGATTACAACAGACGAAGCTCTGAAACGTCACATGAGGTTC
TGCCAACAGTTCAGGTCATCTACTCCTCCCGACAGCACCAACGAGGATTT
CATCCTCGCCGTCAAACAGATTCTGTTCCGAACTTTGGATTCTCCGAGGA
AAGACCGTTTCAGTTGTCGACCACTTGGGAGATCTCAAAGTTGCTTCTCA
ACCATGCAAGGAACGCAGGAGGCCCAGAGGGAATGATCACTCCTCTTATC
TTACACCAGCAATAAAAGGACTCACGAATCACATATTCATTCAAGCAAAA
CTTAGATACATGACTGTTATTCGATTATGTGAGAGTTGAAGTTTTATTTC
CTTAATTCAAAAGGGTACAACTTCAGTGTTGATAAGAGAATAATATTTTA
AGGAACTGTATCTAAGTTTTTGTTGTATAAATAAAAATTGAGAGATTTGG
TGGTTAATGAGGTGTACAACCCCAgttgtgtgtgtgtgtttttttttttt
gttctgttgtgagttgggttatggtttaggttataaggtgtttggttgtg
tttttgtttgATATTTGGGATTGAGAGGATGATTGTTGATAGGTGTCTTC
TTTCCTTGACTTCAATCTAAATGTCACTTTTGGTTACTGGTAATGAAAAT
TCAGTTTCTC
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protein sequence of Vigun08g048200.2_Vu_IT97K-499-35_v1.1

>Vigun08g048200.2_Vu_IT97K-499-35_v1.1 ID=Vigun08g048200.2_Vu_IT97K-499-35_v1.1; Name=Vigun08g048200.2_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=139bp
MTAVEMVAEPAEAAVTAVKCCCCALVEECTQAYIGRVKERYGGRWICGLC
SEAVKEEREREKIMITTDEALKRHMRFCQQFRSSTPPDSTNEDFILAVKQ
ILFRTLDSPRKDRFSCRPLGRSQSCFSTMQGTQEAQRE*
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mRNA from alignment at Vu08:5365695..5367282+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g048200.2_Vu_IT97K-499-35_v1.1 ID=Vigun08g048200.2_Vu_IT97K-499-35_v1.1; Name=Vigun08g048200.2; organism=Vigna unguiculata; type=mRNA; length=1588bp; location=Sequence derived from: Vu08:5365695..5367282+ (Vigna unguiculata
AGAAATCTCTTCAAACCAGAAGTAACAGCACAGTACACCGAGTAAAACCC
AACCATAACAAATAACAAATAAACAACAATTTTAAAAACAAACAATTGCG
ACATTAGCAGTAAATGGTAATTTCCAATCCCACCGAACCCTCCAATGATT
GGGAAATTTTTTCCCTTTTCGATATAAATAAATTGCAAAGCAACACAAAG
ATCTGCATCTCGGCATCTATATCTATCCACACATCCACACCCTTCTGCCT
CAATCCTCGTCACACACAAAACACAACACTCTCACATGTTGTGGACCAAA
CCCAGATCCATCACTCACAAAACCAGTAATTATTGATTTTGTGTTCGTGT
TGGATTCGGTTTCACCAATTTGTCCAAGAGAGCCCGTGAAGGGTCTGTGA
TGTACCATAAGCTGTTCGAGCTTTTGTTTTTGTTTTTCGGCGGCGAGAAG
GTTGAAGAGACCCAGTGGGAGAAGGAGCGATAAACCACATCAATATTCTT
CTAGATCTTTCCATTGTTTCTATTCATCTTCCACTTCTGATTATTCGGGT
ACGAGAATAACTTAAAAAATCAAGATCTTGAAACAGATTTCTTCGACCTT
TGTTATCAAATCCACAAATTAAGCAAATACCATGCAAAATTCTCCTACCT
TCTTATTAGCATCACCATAGAAATTTTTGGTGTAATTCTTATTTGATTTG
ACGGGTTTGTAGCTATGGCTGCGAAGGTGTTGAAAGAGACGAAGTCGATG
ACGGCGGTGGAGATGGTGGCGGAACCGGCGGAGGCGGCTGTGACGGCTGT
GAAGTGCTGCTGCTGCGCGTTGGTGGAGGAGTGCACGCAGGCGTACATTG
GGCGCGTGAAGGAGAGGTACGGTGGGCGTTGGATTTGTGGGCTGTGTTCG
GAGGCAGTGAAAGAAGAGAGGGAGAGAGAGAAAATCATGATTACAACAGA
CGAAGCTCTGAAACGTCACATGAGGTTCTGCCAACAGTTCAGGTCATCTA
CTCCTCCCGACAGCACCAACGAGGATTTCATCCTCGCCGTCAAACAGATT
CTGTTCCGAACTTTGGATTCTCCGAGGAAAGACCGTTTCAGTTGTCGACC
ACTTGGGAGATCTCAAAGTTGCTTCTCAACCATGCAAGGAACGCAGGAGG
CCCAGAGGGAATGATCACTCCTCTTATCTTACACCAGCAATAAAAGGACT
CACGAATCACATATTCATTCAAGCAAAACTTAGATACATGACTGTTATTC
GATTATGTGAGAGTTGAAGTTTTATTTCCTTAATTCAAAAGGGTACAACT
TCAGTGTTGATAAGAGAATAATATTTTAAGGAACTGTATCTAAGTTTTTG
TTGTATAAATAAAAATTGAGAGATTTGGTGGTTAATGAGGTGTACAACCC
CAGTTGTGTGTGTGTGTTTTTTTTTTTTGTTCTGTTGTGAGTTGGGTTAT
GGTTTAGGTTATAAGGTGTTTGGTTGTGTTTTTGTTTGATATTTGGGATT
GAGAGGATGATTGTTGATAGGTGTCTTCTTTCCTTGACTTCAATCTAAAT
GTCACTTTTGGTTACTGGTAATGAAAATTCAGTTTCTC
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Coding sequence (CDS) from alignment at Vu08:5365695..5367282+

>Vigun08g048200.2_Vu_IT97K-499-35_v1.1 ID=Vigun08g048200.2_Vu_IT97K-499-35_v1.1; Name=Vigun08g048200.2; organism=Vigna unguiculata; type=CDS; length=417bp; location=Sequence derived from: Vu08:5365695..5367282+ (Vigna unguiculata
ATGACGGCGGTGGAGATGGTGGCGGAACCGGCGGAGGCGGCTGTGACGGC
TGTGAAGTGCTGCTGCTGCGCGTTGGTGGAGGAGTGCACGCAGGCGTACA
TTGGGCGCGTGAAGGAGAGGTACGGTGGGCGTTGGATTTGTGGGCTGTGT
TCGGAGGCAGTGAAAGAAGAGAGGGAGAGAGAGAAAATCATGATTACAAC
AGACGAAGCTCTGAAACGTCACATGAGGTTCTGCCAACAGTTCAGGTCAT
CTACTCCTCCCGACAGCACCAACGAGGATTTCATCCTCGCCGTCAAACAG
ATTCTGTTCCGAACTTTGGATTCTCCGAGGAAAGACCGTTTCAGTTGTCG
ACCACTTGGGAGATCTCAAAGTTGCTTCTCAACCATGCAAGGAACGCAGG
AGGCCCAGAGGGAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012876DUF1677_pln