Vigun08g049500.3
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun08g049500.3 vs. DB:Swiss
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=PUB6 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 2.502e-21 Identity = 96/319 (30.09%), Postives = 160/319 (50.16%), Query Frame = 1 Query: 394 MTRRREAAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDES--KNXXXXXXXXXXXXXXXGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLV--LFLVNSIGDMEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGVAXXXXXXXXXXXXXAQKRASRILEILRVDKG-------------KQISGSYGLGAAVSAPICGSSSAKP 1299 + ++ + VR+L K++ E R + G + + L+ + N+ AL NL + N+ NK ++ G + + K+I S A +L LS L+ KP+IGSS ++SF V L L D + +Q K DAL ALYNLS Y N+ +L ++++ L ++ S G+ E++LA+L NL S+REG++ + Q I L VL+ D+ E QE+A L+++ S Q +++ GV SL+ +S+ GS + ++ ++L + R + K +S + A VSAP S KP Sbjct: 438 LAKKCKVVENVRILLKDNEEARILMGANGFVEAFLQFLESAVHDNNAAAQETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISC-----SQSQGPATALYLNLSCLEKAKPVIGSSQAVSFFVNLL--LQD-TKTQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQVLASTGNHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGDTVE-QEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQRHRDQPSPNKEEAPRKTVSAPMAIPAPVSAP---ESEVKP 744
BLAST of Vigun08g049500.3 vs. DB:Swiss
Match: PUB7_ARATH (U-box domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=PUB7 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.811e-20 Identity = 86/284 (30.28%), Postives = 154/284 (54.23%), Query Frame = 1 Query: 394 MTRRREAAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDES--KNXXXXXXXXXXXXXXXGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLV---LFLVNSIGDMEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGVAXXXXXXXXXXXXXAQKRASRILEILRVDKGKQ 1230 + ++ + K+RLL K+D E R + G + L+ L + N+ + AL NL + N+ NK ++ G + + K+I S + S+ A +L LS LD K +IGSS ++ FLV+ LQ + +Q K DAL ALYNLS Y N+ +L ++++ L+ S G+ E++LA+L NL S++EG+ + Q I L VL+ D+ E QE+A L+++ + Q +++ GV SL+ +S+ G+ ++++ ++L + R ++ ++ Sbjct: 438 LEKKCKVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLTSGVIRLLEKMISSAESHGSAT-----ALYLNLSCLDEAKSVIGSSQAVPFLVQLLQK---EIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENLWIEKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTE-QEQAVSCLLILCNGRESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQR 712
BLAST of Vigun08g049500.3 vs. DB:Swiss
Match: PUB12_ORYSJ (U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.579e-18 Identity = 89/273 (32.60%), Postives = 143/273 (52.38%), Query Frame = 1 Query: 403 RREAAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDESKNXXXXXXXXXXXXXXXGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLVL----FLVNSIGDMEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGVAXXXXXXXXXXXXXAQKRASRILEIL 1209 +R AA ++RLLAK ++ R +A GAIP LV +L S + L++ ++ NKA+IV ++ K+++++++ E A LS +D NK IG++ +I L+ L S + K+DA A++NL IY N ++ +V+ FLV+ G M + AL++LS L EG K + A + IP LV+V+ T SP +E A+ IL ++ A AGV +L ELS G+ A+++AS ILE++ Sbjct: 340 QRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSI---HENNKASIVDSHAIPKIVEVLKT---GSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCD----GSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGM--IDEALSLLSILAGNPEG-KIVIARSEPIPPLVEVIK-TGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILELM 598
BLAST of Vigun08g049500.3 vs. DB:Swiss
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 5.441e-17 Identity = 85/289 (29.41%), Postives = 149/289 (51.56%), Query Frame = 1 Query: 391 SMTRRREAAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDESKNXXXXXXXXXXXXXXXGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLVLFLVNSIGDME-VTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGVAXXXXXXXXXXXXXAQKRASRILEILRVDKGKQISGSYGLG 1254 S+ +R+A ++RLLAK +++ R + GAI LV +L + + + L++ ND NK AI G++E ++ ++E+ S E A LS ++ NK IG S +I LV L + + K+DA AL+NLSI+ N A ++++ V +L++ + + ++A+A+L+NL + EGR AI + IP+LV+V+ S +E A+ L+ ++ S +++ G L+ LS G+ A+++A +L R Q G+ G G Sbjct: 554 SLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSI---NDNNKKAIADAGAIEPLIHVLENGS---SEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLL----GNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQ-EGGIPLLVEVVEL-GSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFR----NQRHGNAGRG 826
BLAST of Vigun08g049500.3 vs. DB:Swiss
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.766e-15 Identity = 76/243 (31.28%), Postives = 124/243 (51.03%), Query Frame = 1 Query: 403 RREAAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDESKNXXXXXXXXXXXXXXXGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLVLFLVNSIGDM--EVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEA 1125 +R AA ++RLLAK + + R +A GAIP LV +L + + + L++ + NK AIV G++ ++++++ E A LS +D NK IG+ +I LV L ++ + + K+DA AL+NL IY N + ++ L + + + + ALAIL+ L S EG KAI D++P LV+ + T SP +E A+ +L+ H GD Q ++EA Sbjct: 369 QRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSIC---ENNKGAIVSAGAIPGIVQVLKKG---SMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLL----NEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEG-KAIIGSSDAVPSLVEFIR-TGSPRNRENAAAVLV---HLCSGDPQHLVEA 596
BLAST of Vigun08g049500.3 vs. DB:Swiss
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.026e-15 Identity = 84/281 (29.89%), Postives = 152/281 (54.09%), Query Frame = 1 Query: 400 RRREAAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDESKNXXXXXXXXXXXXXXXGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLVLFLVNSIGDM--EVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGVAXXXXXXXXXXXXXAQKRASRILEILRVDKGKQIS 1236 ++R AA ++RLLAK +++ R +A GAIP LV +L + L++ N+ NK AIV G++ +++++++ E A LS +D NK IG++ +I L+ SL ++ + + K+DA A++NL IY N + ++ +V L + D + + ALAIL+ L + +EG+ AI A +SIP+LV+++ T SP +E A+ IL + + E G +L EL+ G+ A+++A+ +LE+++ +G ++ Sbjct: 361 QQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSI---NEGNKGAIVDAGAITDIVEVLKNG---SMEARENAAATLFSLSVIDENKVAIGAAGAIQALI----SLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAI-AEAESIPVLVEIIR-TGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQQTEGVAVT 629
BLAST of Vigun08g049500.3 vs. DB:Swiss
Match: PUB45_ARATH (U-box domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=PUB45 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.837e-15 Identity = 80/268 (29.85%), Postives = 146/268 (54.48%), Query Frame = 1 Query: 421 KVRLLAKEDLEVRGTLAMLGAIPPLVAMLDES--KNXXXXXXXXXXXXXXXGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLVLFLVN-SIGDME-VTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGVAXXXXXXXXXXXXXAQKRASRILEILR 1212 ++R+L K+D E R + G + L+ L + +N+ AL NL + N+ NK ++ G + + +++ +P S + A +L LS L+ KP+IGSS ++ F+V L + ++ Q K DAL +L++LS YP N+ +L DLV L + +I D + TE++LA+L NLV G+ + + + L +L+ T P QE+A +L+++ + S + +++ GV SL+ +S+ G+ ++RA ++L + R Sbjct: 445 QIRVLLKDDEEARILMGENGCVEALLQFLGSALNENNASAQKVGAMALFNLAVDNNRNKELMLASGIIPLLEEMLCNPHSHGS-----VTAIYLNLSCLEEAKPVIGSSLAVPFMVNLLWT---ETEVQCKVDALHSLFHLSTYPPNIPCLLSADLVNALQSLTISDEQRWTEKSLAVLLNLVLNEAGKDEMVSAPSLVSNLCTILD-TGEPNEQEQAVSLLLILCNHSEICSEMVLQEGVIPSLVSISVNGTQRGRERAQKLLTLFR 703
BLAST of Vigun08g049500.3 vs. DB:Swiss
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 4.918e-15 Identity = 82/269 (30.48%), Postives = 146/269 (54.28%), Query Frame = 1 Query: 412 AAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDESKNXXXXXXXXXXXXXXXGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIG-SSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLVLFLVNSIG-DMEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGVAXXXXXXXXXXXXXAQKRASRILEILR 1212 AA ++R L +E R + GAI PL+++L + + L++ ++ NKA IV+VG++E ++ ++ + G D + E A+ LS L N+ IG S+A+I LV L K + + K+DA AL+NLSI N A +++ V +LV + D+E+ ++A+A+L+NL + EGR+AI + IP+LV+ ++ S +E A+ +L+ + S +++ G L+ LS G+ A+++A ++L R Sbjct: 492 AAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVTALLNLSI---SELNKAMIVEVGAIEPLVHVLNT--GNDRA-KENSAASLFSLSVLQVNRERIGQSNAAIQALVNLL----GKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVDKAVALLANLSAVGEGRQAI-VREGGIPLLVETVDL-GSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFR 748
BLAST of Vigun08g049500.3 vs. DB:Swiss
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUB2 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.149e-14 Identity = 78/278 (28.06%), Postives = 139/278 (50.00%), Query Frame = 1 Query: 391 SMTRRREAAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDESKNXXXXXXXXXXXXXXXGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLVLFLVNSIGD-MEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGVAXXXXXXXXXXXXXAQKRASRILEILRVDK 1221 S+ +REA ++R+LA+ + R +A AIP LV++L + + + L++ ND NK+ I + G++ ++ ++++ G A LS ++ K IG + +I LV L S S K+DA AL+NLSI+ N V+E V +LV + + E+A+ +L+NL + REG+ AI + IP+LV+V+ S +E A+ L+ + S +I GV L+ L+ G+ +++A +L+ + + Sbjct: 434 SLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSI---NDNNKSLIAESGAIVPLIHVLKT--GYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGS----GSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAIGE-EGGIPVLVEVVE-LGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHR 700
BLAST of Vigun08g049500.3 vs. DB:Swiss
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.313e-13 Identity = 75/243 (30.86%), Postives = 127/243 (52.26%), Query Frame = 1 Query: 403 RREAAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDESKNXXXXXXXXXXXXXXXGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLVLFLVNSIGDME--VTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEA 1125 RR AA ++RLLAK++ R +A GAIP LV +L S ND ++ ++LNL I + + G+V ++ +++ E A LS +D NK IG++ +I LV L + S + K+DA AL+NL I+ N + LV L+ + + E + + +L+IL+ L S +G+ + A D++P+LVD + + SP +E ++ +L+ H ++Q +IEA Sbjct: 372 RRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTIS-NDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKG---SMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLLS----EGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGAA-DAVPVLVDFIR-SGSPRNKENSAAVLV---HLCSWNQQHLIEA 601 The following BLAST results are available for this feature:
BLAST of Vigun08g049500.3 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g049500.3_Vu_IT97K-499-35_v1.1 ID=Vigun08g049500.3_Vu_IT97K-499-35_v1.1; Name=Vigun08g049500.3; organism=Vigna unguiculata; type=mRNA; length=2684bpback to top protein sequence of Vigun08g049500.3_Vu_IT97K-499-35_v1.1 >Vigun08g049500.3_Vu_IT97K-499-35_v1.1 ID=Vigun08g049500.3_Vu_IT97K-499-35_v1.1; Name=Vigun08g049500.3_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=501bpback to top mRNA from alignment at Vu08:5550652..5554066- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun08g049500.3_Vu_IT97K-499-35_v1.1 ID=Vigun08g049500.3_Vu_IT97K-499-35_v1.1; Name=Vigun08g049500.3; organism=Vigna unguiculata; type=mRNA; length=3415bp; location=Sequence derived from: Vu08:5550652..5554066- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu08:5550652..5554066- >Vigun08g049500.3_Vu_IT97K-499-35_v1.1 ID=Vigun08g049500.3_Vu_IT97K-499-35_v1.1; Name=Vigun08g049500.3; organism=Vigna unguiculata; type=CDS; length=1503bp; location=Sequence derived from: Vu08:5550652..5554066- (Vigna unguiculataback to top |