Vigun08g059300.1

Transcript Overview
NameVigun08g059300.1
Unique NameVigun08g059300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length896
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:7647289..7648367 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR377Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL091Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuL479Pisum sativum Cameor genome v1aPisum sativum
psvuL620Pisum sativum Cameor genome v1aPisum sativum
pvvuL058Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL425Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL772Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL338Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0476Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL422Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0599Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuL1102Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0116Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0317Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0363Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0746Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0751Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1010Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL532Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR600Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR609Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vssvuL380Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL561Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR397Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR400Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL308Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL392Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
carvuL325Cicer arietinum
carvuL388Cicer arietinum
ccavuL331Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL425Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvvaR693Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR695Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR716Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL228Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvuL056Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL678Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR467Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g059300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g059300Vigun08g059300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g059300.1Vigun08g059300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g059300.1_Vu_IT97K-499-35_v1.1Vigun08g059300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g059300.1.v1.1.CDS.2Vigun08g059300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g059300.1.v1.1.CDS.1Vigun08g059300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g059300.1.v1.1.three_prime_UTR.1Vigun08g059300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g059300.1.v1.1.five_prime_UTR.1Vigun08g059300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun08g059300.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 36..63

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g059300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059300.1; organism=Vigna unguiculata; type=mRNA; length=896bp
CATTGTCACGTCTTGGACTGATGAATTGGTCATTGTGGCACTTGGGACAA
CTTGGTTAGTACCAAGTTAATGTTAATTTATTGCAGTAGTGGGACTAACC
CAACTGTTTGATTCAAAATTTCATTCCGAAAAATGTTATTAGAGAAATTC
CGAAATTAATAATTCAAAAATCAAATTTACAAGGGTCAAAAATGGTCATT
TTTTTGAAAATTGATGGGGTGAAGTTATTGCCATTACTTGTTTATTCTGA
AAATTGGGCCGGTGTAACATATCCAAAACAGAAAGCCCGTACCATTAAAC
GCTGAAACTGAAACCACATTCTTTGCAGAAATCAAGAGTGAAGAAACGAT
AATGAGACCTGTTTCTCAGAAATGGGGCTACATTCGAATCATGGCCGGTA
CAATCCTTGGAGGCATCCTCGGATTCTACGTTATGCACCGTGTTGAATCT
AACTACAAGGAGAGAATGAACGAGAGGCTGAGAAACTATGAGGCTGAATT
GAGGAGGAAGAAGGACGAGAGATTGAACGAGTTTGAGGAATCCTCCAAGT
TTTGAAAAATTGTGGttttcttttcttactttttgatgttctctttttct
ttttatgtttGATTTATGAGAATAATTGGAAAAATTCTATCTTTGTATAC
TAGAACATCTTTAACGATGTATAGTTTCTCCCTTTTCATATGCTGTTGAA
AGGGCTTAAAAGCCTTACTATTAACCCAATTTCATAGAACTGAAACATGC
AGCTTGCGTCAAACCTAAGAAAGAGATTTGTATAGTAGAAGATAATGCAG
ATAAATGTATTATGTTTGAATTTAATGGTGATTAATTTATGTTGGAATAT
GTTTGATCATATGGCAATATGTAGCATGATTCTAATTCAAATCAAA
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protein sequence of Vigun08g059300.1_Vu_IT97K-499-35_v1.1

>Vigun08g059300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=68bp
MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAEL
RRKKDERLNEFEESSKF*
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mRNA from alignment at Vu08:7647289..7648367-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g059300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059300.1; organism=Vigna unguiculata; type=mRNA; length=1079bp; location=Sequence derived from: Vu08:7647289..7648367- (Vigna unguiculata
CATTGTCACGTCTTGGACTGATGAATTGGTCATTGTGGCACTTGGGACAA
CTTGGTTAGTACCAAGTTAATGTTAATTTATTGCAGTAGTGGGACTAACC
CAACTGTTTGATTCAAAATTTCATTCCGAAAAATGTTATTAGAGAAATTC
CGAAATTAATAATTCAAAAATCAAATTTACAAGGGTCAAAAATGGTCATT
TTTTTGAAAATTGATGGGGTGAAGTTATTGCCATTACTTGTTTATTCTGA
AAATTGGGCCGGTGTAACATATCCAAAACAGAAAGCCCGTACCATTAAAC
GCTGAAACTGAAACCACATTCTTTGCAGAAATCAAGAGTGAAGAAACGAT
AATGAGACCTGTTTCTCAGAAATGGGGCTACATTCGAATCATGGCCGGTA
CAATCCTTGGAGGCATCCTCGGATTCTACGTTATGCACCGTGTTGAATCT
AACTACAAGGTTAGCATACCATCACTCTCTTCTTTCTTCCCAGTTGCTTC
TTCTGCCTCTTCAATTTTATGGCTTTCTGAAGCTAACTAATGGAGGCTTG
AAAGAATATTTTGAAACCCTTTTCCCTTTTCTCTTTAAAGATTTTTTTCT
TTTTTCGTGTGTTTGATGTGGGTGTACTTGTGCTGTGTGCAGGAGAGAAT
GAACGAGAGGCTGAGAAACTATGAGGCTGAATTGAGGAGGAAGAAGGACG
AGAGATTGAACGAGTTTGAGGAATCCTCCAAGTTTTGAAAAATTGTGGTT
TTCTTTTCTTACTTTTTGATGTTCTCTTTTTCTTTTTATGTTTGATTTAT
GAGAATAATTGGAAAAATTCTATCTTTGTATACTAGAACATCTTTAACGA
TGTATAGTTTCTCCCTTTTCATATGCTGTTGAAAGGGCTTAAAAGCCTTA
CTATTAACCCAATTTCATAGAACTGAAACATGCAGCTTGCGTCAAACCTA
AGAAAGAGATTTGTATAGTAGAAGATAATGCAGATAAATGTATTATGTTT
GAATTTAATGGTGATTAATTTATGTTGGAATATGTTTGATCATATGGCAA
TATGTAGCATGATTCTAATTCAAATCAAA
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Coding sequence (CDS) from alignment at Vu08:7647289..7648367-

>Vigun08g059300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059300.1; organism=Vigna unguiculata; type=CDS; length=204bp; location=Sequence derived from: Vu08:7647289..7648367- (Vigna unguiculata
ATGAGACCTGTTTCTCAGAAATGGGGCTACATTCGAATCATGGCCGGTAC
AATCCTTGGAGGCATCCTCGGATTCTACGTTATGCACCGTGTTGAATCTA
ACTACAAGGAGAGAATGAACGAGAGGCTGAGAAACTATGAGGCTGAATTG
AGGAGGAAGAAGGACGAGAGATTGAACGAGTTTGAGGAATCCTCCAAGTT
TTGA
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