Transcript Overview
| Name | Vigun08g059300.1 |
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| Unique Name | Vigun08g059300.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 896 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g059300.1 | Vigun08g059300.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun08g059300.1_Vu_IT97K-499-35_v1.1 | Vigun08g059300.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g059300.1.v1.1.CDS.2 | Vigun08g059300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g059300.1.v1.1.CDS.1 | Vigun08g059300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g059300.1.v1.1.three_prime_UTR.1 | Vigun08g059300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g059300.1.v1.1.five_prime_UTR.1 | Vigun08g059300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 36..63 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g059300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059300.1; organism=Vigna unguiculata; type=mRNA; length=896bp
CATTGTCACGTCTTGGACTGATGAATTGGTCATTGTGGCACTTGGGACAA
CTTGGTTAGTACCAAGTTAATGTTAATTTATTGCAGTAGTGGGACTAACC
CAACTGTTTGATTCAAAATTTCATTCCGAAAAATGTTATTAGAGAAATTC
CGAAATTAATAATTCAAAAATCAAATTTACAAGGGTCAAAAATGGTCATT
TTTTTGAAAATTGATGGGGTGAAGTTATTGCCATTACTTGTTTATTCTGA
AAATTGGGCCGGTGTAACATATCCAAAACAGAAAGCCCGTACCATTAAAC
GCTGAAACTGAAACCACATTCTTTGCAGAAATCAAGAGTGAAGAAACGAT
AATGAGACCTGTTTCTCAGAAATGGGGCTACATTCGAATCATGGCCGGTA
CAATCCTTGGAGGCATCCTCGGATTCTACGTTATGCACCGTGTTGAATCT
AACTACAAGGAGAGAATGAACGAGAGGCTGAGAAACTATGAGGCTGAATT
GAGGAGGAAGAAGGACGAGAGATTGAACGAGTTTGAGGAATCCTCCAAGT
TTTGAAAAATTGTGGttttcttttcttactttttgatgttctctttttct
ttttatgtttGATTTATGAGAATAATTGGAAAAATTCTATCTTTGTATAC
TAGAACATCTTTAACGATGTATAGTTTCTCCCTTTTCATATGCTGTTGAA
AGGGCTTAAAAGCCTTACTATTAACCCAATTTCATAGAACTGAAACATGC
AGCTTGCGTCAAACCTAAGAAAGAGATTTGTATAGTAGAAGATAATGCAG
ATAAATGTATTATGTTTGAATTTAATGGTGATTAATTTATGTTGGAATAT
GTTTGATCATATGGCAATATGTAGCATGATTCTAATTCAAATCAAA back to topprotein sequence of Vigun08g059300.1_Vu_IT97K-499-35_v1.1 >Vigun08g059300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=68bp
MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAEL
RRKKDERLNEFEESSKF* back to topmRNA from alignment at Vu08:7647289..7648367- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g059300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059300.1; organism=Vigna unguiculata; type=mRNA; length=1079bp; location=Sequence derived from: Vu08:7647289..7648367- (Vigna unguiculata
CATTGTCACGTCTTGGACTGATGAATTGGTCATTGTGGCACTTGGGACAA
CTTGGTTAGTACCAAGTTAATGTTAATTTATTGCAGTAGTGGGACTAACC
CAACTGTTTGATTCAAAATTTCATTCCGAAAAATGTTATTAGAGAAATTC
CGAAATTAATAATTCAAAAATCAAATTTACAAGGGTCAAAAATGGTCATT
TTTTTGAAAATTGATGGGGTGAAGTTATTGCCATTACTTGTTTATTCTGA
AAATTGGGCCGGTGTAACATATCCAAAACAGAAAGCCCGTACCATTAAAC
GCTGAAACTGAAACCACATTCTTTGCAGAAATCAAGAGTGAAGAAACGAT
AATGAGACCTGTTTCTCAGAAATGGGGCTACATTCGAATCATGGCCGGTA
CAATCCTTGGAGGCATCCTCGGATTCTACGTTATGCACCGTGTTGAATCT
AACTACAAGGTTAGCATACCATCACTCTCTTCTTTCTTCCCAGTTGCTTC
TTCTGCCTCTTCAATTTTATGGCTTTCTGAAGCTAACTAATGGAGGCTTG
AAAGAATATTTTGAAACCCTTTTCCCTTTTCTCTTTAAAGATTTTTTTCT
TTTTTCGTGTGTTTGATGTGGGTGTACTTGTGCTGTGTGCAGGAGAGAAT
GAACGAGAGGCTGAGAAACTATGAGGCTGAATTGAGGAGGAAGAAGGACG
AGAGATTGAACGAGTTTGAGGAATCCTCCAAGTTTTGAAAAATTGTGGTT
TTCTTTTCTTACTTTTTGATGTTCTCTTTTTCTTTTTATGTTTGATTTAT
GAGAATAATTGGAAAAATTCTATCTTTGTATACTAGAACATCTTTAACGA
TGTATAGTTTCTCCCTTTTCATATGCTGTTGAAAGGGCTTAAAAGCCTTA
CTATTAACCCAATTTCATAGAACTGAAACATGCAGCTTGCGTCAAACCTA
AGAAAGAGATTTGTATAGTAGAAGATAATGCAGATAAATGTATTATGTTT
GAATTTAATGGTGATTAATTTATGTTGGAATATGTTTGATCATATGGCAA
TATGTAGCATGATTCTAATTCAAATCAAA back to topCoding sequence (CDS) from alignment at Vu08:7647289..7648367- >Vigun08g059300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059300.1; organism=Vigna unguiculata; type=CDS; length=204bp; location=Sequence derived from: Vu08:7647289..7648367- (Vigna unguiculata
ATGAGACCTGTTTCTCAGAAATGGGGCTACATTCGAATCATGGCCGGTAC
AATCCTTGGAGGCATCCTCGGATTCTACGTTATGCACCGTGTTGAATCTA
ACTACAAGGAGAGAATGAACGAGAGGCTGAGAAACTATGAGGCTGAATTG
AGGAGGAAGAAGGACGAGAGATTGAACGAGTTTGAGGAATCCTCCAAGTT
TTGA back to top
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