Vigun08g059600.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Vigun08g059600.1 vs. DB:Swiss
Match: RL27_VIBPA (50S ribosomal protein L27 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=rpmA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 4.669e-32 Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 121 WASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFERNKLTGRKWVHVEPK 375
A KK GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH GN VG+GKDHTLFAL EG VKFE RK+V +E +
Sbjct: 1 MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGNNVGIGKDHTLFALTEGKVKFEVKGPKNRKFVSIEAE 85
BLAST of Vigun08g059600.1 vs. DB:Swiss
Match: RL27_VIBCB (50S ribosomal protein L27 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=338187 GN=rpmA PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 4.669e-32 Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 121 WASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFERNKLTGRKWVHVEPK 375
A KK GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH GN VG+GKDHTLFAL EG VKFE RK+V +E +
Sbjct: 1 MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGNNVGIGKDHTLFALTEGKVKFEVKGPKNRKFVSIEAE 85
BLAST of Vigun08g059600.1 vs. DB:Swiss
Match: RL27_VIBVY (50S ribosomal protein L27 OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=rpmA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 6.135e-32 Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 121 WASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFERNKLTGRKWVHVEPK 375
A KK GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH GN VGLGKDHTLFAL +G VKFE RK+V +E +
Sbjct: 1 MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTQFHAGNNVGLGKDHTLFALTDGKVKFEVKGPKNRKFVSIEAE 85
BLAST of Vigun08g059600.1 vs. DB:Swiss
Match: RL27_VIBVU (50S ribosomal protein L27 OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=rpmA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 6.135e-32 Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 121 WASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFERNKLTGRKWVHVEPK 375
A KK GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH GN VGLGKDHTLFAL +G VKFE RK+V +E +
Sbjct: 1 MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTQFHAGNNVGLGKDHTLFALTDGKVKFEVKGPKNRKFVSIEAE 85
BLAST of Vigun08g059600.1 vs. DB:Swiss
Match: RL27_BARHE (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 6.587e-32 Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 124 ASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFERNKLTGRKWVHVEP 372
A KK GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPG+ VG+GKDHTLFAL +G+V F+R K R +V V P
Sbjct: 2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFALSKGMVSFQR-KANNRSYVSVIP 83
BLAST of Vigun08g059600.1 vs. DB:Swiss
Match: RL27_BART1 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.088e-31 Identity = 57/83 (68.67%), Postives = 65/83 (78.31%), Query Frame = 1 Query: 124 ASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFERNKLTGRKWVHVEP 372
A KK GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPG+ VG+GKDHTLFAL EG V F+R K R +V V P
Sbjct: 2 AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFALSEGKVSFQR-KAGNRSYVSVIP 83
BLAST of Vigun08g059600.1 vs. DB:Swiss
Match: RL27_VIBCM (50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain M66-2) OX=579112 GN=rpmA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.463e-31 Identity = 55/86 (63.95%), Postives = 64/86 (74.42%), Query Frame = 1 Query: 121 WASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFERNKLTGRKWVHVEPKE 378
A KK GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G VG+GKDHTLFAL +G VKFE RK+V +E E
Sbjct: 1 MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86
BLAST of Vigun08g059600.1 vs. DB:Swiss
Match: RL27_VIBCH (50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=rpmA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.463e-31 Identity = 55/86 (63.95%), Postives = 64/86 (74.42%), Query Frame = 1 Query: 121 WASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFERNKLTGRKWVHVEPKE 378
A KK GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G VG+GKDHTLFAL +G VKFE RK+V +E E
Sbjct: 1 MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86
BLAST of Vigun08g059600.1 vs. DB:Swiss
Match: RL27_VIBC3 (50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=rpmA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.463e-31 Identity = 55/86 (63.95%), Postives = 64/86 (74.42%), Query Frame = 1 Query: 121 WASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFERNKLTGRKWVHVEPKE 378
A KK GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G VG+GKDHTLFAL +G VKFE RK+V +E E
Sbjct: 1 MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86
BLAST of Vigun08g059600.1 vs. DB:Swiss
Match: RL27_PSEU2 (50S ribosomal protein L27 OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=rpmA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.124e-31 Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 121 WASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFERNKLTGRKWVHVEPK 375
A KK GST+NGRDS+ K LGVK +GG+ +IPGNIIVRQRGT+FH G VG+GKDHTLFA EG++KF+ GR++V + PK
Sbjct: 1 MAHKKAGGSTRNGRDSEAKRLGVKMYGGQAIIPGNIIVRQRGTQFHAGYGVGMGKDHTLFAKVEGVIKFQVKGAFGRRYVSIVPK 85 The following BLAST results are available for this feature:
BLAST of Vigun08g059600.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g059600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059600.1; organism=Vigna unguiculata; type=mRNA; length=441bpback to top protein sequence of Vigun08g059600.1_Vu_IT97K-499-35_v1.1 >Vigun08g059600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=147bpback to top mRNA from alignment at Vu08:7864099..7864755- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun08g059600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059600.1; organism=Vigna unguiculata; type=mRNA; length=657bp; location=Sequence derived from: Vu08:7864099..7864755- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu08:7864099..7864755- >Vigun08g059600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g059600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g059600.1; organism=Vigna unguiculata; type=CDS; length=441bp; location=Sequence derived from: Vu08:7864099..7864755- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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