Transcript Overview
| Name | Vigun08g061500.1 |
|---|
| Unique Name | Vigun08g061500.1_Vu_IT97K-499-35_v1.1 |
|---|
| Type | mRNA |
|---|
| Organism | Vigna unguiculata (cowpea) |
|---|
| Sequence length | 728 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g061500.1 | Vigun08g061500.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun08g061500.1_Vu_IT97K-499-35_v1.1 | Vigun08g061500.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g061500.1.v1.1.CDS.2 | Vigun08g061500.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g061500.1.v1.1.CDS.1 | Vigun08g061500.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g061500.1.v1.1.three_prime_UTR.1 | Vigun08g061500.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g061500.1.v1.1.five_prime_UTR.1 | Vigun08g061500.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR010666 | Zinc finger, GRF-type | PFAM | PF06839 | zf-GRF | coord: 20..62
e-value: 1.9E-8
score: 34.3 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g061500.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g061500.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g061500.1; organism=Vigna unguiculata; type=mRNA; length=728bp
ACGTTTTGATGGTGCAGTAATTTGGAATTGGATGGTAAGTTTTGCTGGCG
ACCAGAGAGAGCCGTCGAGAGCATACCACAACCACCATTGTGTGACGCTG
CAACAAACTGAAATCGCGAGCGAGAAGGAGGTTACGCGAATCGGGTTGCA
AATCACTTCCACTGGGTACGCGAAATTCAATTGAGGAATAGGGTTGTATT
GAAGGGAGGTTAGTGTGTTGATTTTGGCGGTGGAGAAAGTAAATTTGGGG
ATTAGGGTTTTCTTTTGTTCTTGTTTTCGAAATATGAAAGAGTTATGGAT
CGAAGTGTTCGACCTCGTCTTCTTCTTCTTCAAAGCGAGGATTTTCAAaa
attttgtggatgtggggaaaaattattgttattgaaagccaacaccgcga
agaacaatggtagatttttctggagatgtagaaactggacaactgaagga
aattgtagcttcttccaatgggctgatgaaggggaacctgTTTGGGATGA
ATTAACAGAGAAAAAAGATGAAGAAACTTTGTGTGATAAGGAGAAAATGG
TTGTGGATTTGCTTCAGAAGAATGTGAAGCTAAAGAAGAAATTGATGGAG
GAGAGAAAACTGGGTCAAATTAAGATGTGGCTTTTCTTAGTTTCATGGGC
ATTTACTATTGTGTTTTGTGTTTTATTCGTGATGAAAATCAATTGTAACA
TGTAGCAACTTAGCAGCTTGTTCTTGTA back to topprotein sequence of Vigun08g061500.1_Vu_IT97K-499-35_v1.1 >Vigun08g061500.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g061500.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g061500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=137bp
MDRSVRPRLLLLQSEDFQKFCGCGEKLLLLKANTAKNNGRFFWRCRNWTT
EGNCSFFQWADEGEPVWDELTEKKDEETLCDKEKMVVDLLQKNVKLKKKL
MEERKLGQIKMWLFLVSWAFTIVFCVLFVMKINCNM* back to topmRNA from alignment at Vu08:8253173..8253977- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g061500.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g061500.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g061500.1; organism=Vigna unguiculata; type=mRNA; length=805bp; location=Sequence derived from: Vu08:8253173..8253977- (Vigna unguiculata
ACGTTTTGATGGTGCAGTAATTTGGAATTGGATGGTAAGTTTTGCTGGCG
ACCAGAGAGAGCCGTCGAGAGCATACCACAACCACCATTGTGTGACGCTG
CAACAAACTGAAATCGCGAGCGAGAAGGAGGTTACGCGAATCGGGTTGCA
AATCACTTCCACTGGGTACGCGAAATTCAATTGAGGAATAGGGTTGTATT
GAAGGGAGGTTAGTGTGTTGATTTTGGCGGTGGAGAAAGTAAATTTGGGG
ATTAGGGTTTTCTTTTGTTCTTGTTTTCGAAATATGAAAGAGTTATGGAT
CGAAGTGTTCGACCTCGTCTTCTTCTTCTTCAAAGCGAGGATTTTCAAAA
ATTTTGTGGATGTGGGGAAAAATTATTGTTATTGAAAGCCAACACCGCGA
AGAACAATGGTAGATTTTTCTGGAGATGTAGAAACTGGACAGTAAGTATC
ACTGTTTATAGTGTTAAATTTGATGTTGTTATTTGTTGTGAATGAAATTT
GTTTTATTGGCATTGTAGACTGAAGGAAATTGTAGCTTCTTCCAATGGGC
TGATGAAGGGGAACCTGTTTGGGATGAATTAACAGAGAAAAAAGATGAAG
AAACTTTGTGTGATAAGGAGAAAATGGTTGTGGATTTGCTTCAGAAGAAT
GTGAAGCTAAAGAAGAAATTGATGGAGGAGAGAAAACTGGGTCAAATTAA
GATGTGGCTTTTCTTAGTTTCATGGGCATTTACTATTGTGTTTTGTGTTT
TATTCGTGATGAAAATCAATTGTAACATGTAGCAACTTAGCAGCTTGTTC
TTGTA back to topCoding sequence (CDS) from alignment at Vu08:8253173..8253977- >Vigun08g061500.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g061500.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g061500.1; organism=Vigna unguiculata; type=CDS; length=411bp; location=Sequence derived from: Vu08:8253173..8253977- (Vigna unguiculata
ATGGATCGAAGTGTTCGACCTCGTCTTCTTCTTCTTCAAAGCGAGGATTT
TCAAAAATTTTGTGGATGTGGGGAAAAATTATTGTTATTGAAAGCCAACA
CCGCGAAGAACAATGGTAGATTTTTCTGGAGATGTAGAAACTGGACAACT
GAAGGAAATTGTAGCTTCTTCCAATGGGCTGATGAAGGGGAACCTGTTTG
GGATGAATTAACAGAGAAAAAAGATGAAGAAACTTTGTGTGATAAGGAGA
AAATGGTTGTGGATTTGCTTCAGAAGAATGTGAAGCTAAAGAAGAAATTG
ATGGAGGAGAGAAAACTGGGTCAAATTAAGATGTGGCTTTTCTTAGTTTC
ATGGGCATTTACTATTGTGTTTTGTGTTTTATTCGTGATGAAAATCAATT
GTAACATGTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010666 | Znf_GRF |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
|
