Vigun08g064300.1

Transcript Overview
NameVigun08g064300.1
Unique NameVigun08g064300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1935
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:8970052..8975388 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR377Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL479Pisum sativum Cameor genome v1aPisum sativum
psvuL620Pisum sativum Cameor genome v1aPisum sativum
pvvuL058Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL425Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL542Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL772Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL338Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0491Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL422Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0601Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuL0592Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL0777Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0116Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0317Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0363Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0746Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0747Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1009Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL532Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL705Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR602Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR609Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL289Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL269Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL451Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL422Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL391Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL449Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL380Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL561Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR397Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR400Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL309Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL392Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL474Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL599Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL325Cicer arietinum
carvuL388Cicer arietinum
ccavuL331Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL425Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR658Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR677Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR681Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR693Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR695Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR716Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL228Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL243Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL302Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL056Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL678Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR467Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_004501186.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigst.02G069800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_014646768.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va07G059880.3Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_01837Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_02G00744.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.001G059300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_07922Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014647137.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.2g189440.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan07g233800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.02G090600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
LR48_mrnaVigan04g209800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_12530Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg35857.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.3g165280.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_003485Cajanus cajan Asha genome v1.0Cajanus cajan
XM_058924956.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
PvulFLAVERTChr09.1000651Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr01.1000433Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Cr_12110.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigst.03G138600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cc_v2.0_11237.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Tiffany.R1.2g153120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_09797.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Va04G062100.3Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.009G101200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_004917Cajanus cajan Asha genome v1.0Cajanus cajan
Cr_09696.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_004498517.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_32971Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg55523.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat06G0090400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Psat05G0089700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058929820.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_15043.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_10988Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr08.97.2.62113169Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.03G221200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun09g201000.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun08g064300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun09g201000.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g064300Vigun08g064300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g064300.1Vigun08g064300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g064300.1_Vu_IT97K-499-35_v1.1Vigun08g064300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g064300.1.v1.1.CDS.6Vigun08g064300.1.v1.1.CDS.6_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g064300.1.v1.1.CDS.5Vigun08g064300.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g064300.1.v1.1.CDS.4Vigun08g064300.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g064300.1.v1.1.CDS.3Vigun08g064300.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g064300.1.v1.1.CDS.2Vigun08g064300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g064300.1.v1.1.CDS.1Vigun08g064300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g064300.1.v1.1.three_prime_UTR.1Vigun08g064300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g064300.1.v1.1.five_prime_UTR.2Vigun08g064300.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR
Vigun08g064300.1.v1.1.five_prime_UTR.1Vigun08g064300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
[Close]
BLAST of Vigun08g064300.1 vs. DB:Swiss
Match: HIP1_ORYSJ (Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=39947 GN=HIP1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 4.547e-35
Identity = 77/159 (48.43%), Postives = 101/159 (63.52%), Query Frame = 1 
Query:  976 GDSFWHYNMS--SIEGVLL-----ALERIEQGGELTREQITDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPICK 1431
            GD  W   +S  S EG  L     ALE I +G  +  E    I+  G++ +D HRDMRLDIDNMSYEELLALEER+G VST LSEE + + LK+  + S   +  + +  ++     CCICQEEYV GD++G L C H FHV C+++W+ +KN CPICK
Sbjct:  513 GDGVWGVPLSTRSREGRRLIEIRNALEMIHRGENVRFE---SIFYGGVDIHDRHRDMRLDIDNMSYEELLALEERIGNVSTGLSEEEVTKLLKQRKFSS---WRLEASVEEE----PCCICQEEYVDGDDLGTLDCGHDFHVGCVRQWLVVKNTCPICK 661
[Close]
BLAST of Vigun08g064300.1 vs. DB:Swiss
Match: MBR1_ARATH (E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.518e-32
Identity = 72/151 (47.68%), Postives = 96/151 (63.58%), Query Frame = 1 
Query: 1000 MSSIEGVLLALERIEQGGELTREQ---ITD--IYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIY--QSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPICK 1431
            +S I  VL A+ R    GE  R +   + D  IY+   + +D HR+MRLD+DNMSYEELLAL ER+G VST LSEE + +++K+  +   SP + +  +N         CCICQEEYV GD +G L C H FH DCI++W+ +KN CPICK
Sbjct:  557 ISEIRQVLHAMRR----GENLRVEDYMVFDPLIYQGMTDMHDRHREMRLDVDNMSYEELLALGERIGDVSTGLSEEVILKAMKQHKHTSSSPSSVELHQNIE------PCCICQEEYVEGDNLGTLKCGHEFHKDCIKQWVMIKNLCPICK 697
[Close]
BLAST of Vigun08g064300.1 vs. DB:Swiss
Match: MBR2_ARATH (E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.361e-31
Identity = 59/117 (50.43%), Postives = 76/117 (64.96%), Query Frame = 1 
Query: 1081 IYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPICK 1431
            IY+     +D HRDMRLD+DNMSYEELLAL ER+G VST LSEE + + +K+  +       T       +D   CC+CQEEY  GD++G L C H FH  C+++W+ LKN CPICK
Sbjct:  551 IYQGMAEMHDRHRDMRLDVDNMSYEELLALGERIGDVSTGLSEEVILKVMKQHKH-------TSSAAGSHQDMEPCCVCQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICK 660
[Close]
BLAST of Vigun08g064300.1 vs. DB:Swiss
Match: RHG1A_ARATH (Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.838e-31
Identity = 64/148 (43.24%), Postives = 88/148 (59.46%), Query Frame = 1 
Query: 1000 MSSIEGVLLALERIEQGGELTREQIT----DIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPICK 1431
            +S ++ VL  + R      L  E +      +  +G   +D +RDMRLD+DNMSYEELLALEER+G V T ++EE ++  LK+  Y+S        N    +D   CC+CQEEY  G+++G L C H FH  CI+EW+  KN CPICK
Sbjct:  539 VSQMQNVLDVMRRDANNNNLRLEDVMLLNHSVLFDGATGHDRYRDMRLDVDNMSYEELLALEERIGDVCTGVNEETISNRLKQRKYKS--------NTKSPQDAEPCCVCQEEYTEGEDMGTLECGHEFHSQCIKEWLKQKNLCPICK 678
[Close]
BLAST of Vigun08g064300.1 vs. DB:Swiss
Match: ZFP1_ORYSJ (Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.620e-28
Identity = 53/111 (47.75%), Postives = 78/111 (70.27%), Query Frame = 1 
Query: 1099 NFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPICK 1431
            N  D HRDMRLDID+M+YEELLALEE++G V+T L++  + E LK S++    +  ++++     ++  C ICQEEY + + +G L C HR+H DCI++W+ +KN CPICK
Sbjct:  402 NVVDEHRDMRLDIDSMTYEELLALEEQIGDVNTGLAKSYIVEKLKTSLFVPGSSCMSNKSSESSMENDACIICQEEYQVKECIGTLDCGHRYHEDCIKQWLMVKNLCPICK 512
[Close]
BLAST of Vigun08g064300.1 vs. DB:Swiss
Match: BB_ARATH (E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.219e-13
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query: 1129 LDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPIC 1428
            +D D M+YEEL+ L E +GT S  LS+E L E+L    Y+    +      ++ +   +C ICQ +Y IG+   +LPC H +H +CI +W+ +   CP+C
Sbjct:  145 IDPDTMTYEELVELGEAVGTESRGLSQE-LIETLPTKKYKFGSIF------SRKRAGERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVC 237
[Close]
BLAST of Vigun08g064300.1 vs. DB:Swiss
Match: BBR_ARATH (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query: 1129 LDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPIC 1428
            +D D +SYEELLAL + +GT S  LS + +A         S P+    E  NQ+  +  C IC+ +Y   +++  LPC H +H +CI  W+ +   CP+C
Sbjct:  238 MDPDELSYEELLALGDIVGTESRGLSADTIA---------SLPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVC 328
[Close]
BLAST of Vigun08g064300.1 vs. DB:Swiss
Match: RMR4_ARATH (Receptor homology region, transmembrane domain- and RING domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=RMR4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.878e-11
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1 
Query: 1228 LKRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGL-KNWCPICK 1431
            + +S+    PT   +  C++    I CCIC E Y  GD++  LPC+H+FHV C+  W+G  K++CP+CK
Sbjct:  208 MPKSMIIRMPTTIFNGICDEATTSILCCICLENYEKGDKLRILPCHHKFHVACVDLWLGQRKSFCPVCK 276
[Close]
BLAST of Vigun08g064300.1 vs. DB:Swiss
Match: AIP2_ARATH (E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana OX=3702 GN=AIP2 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.663e-10
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1 
Query: 1231 KRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPICK 1431
            K  + + P    T+E   +   + +CCIC+E  VIGD++ +LPC H FH  C++ W+   N CPIC+
Sbjct:  205 KEVVEKLPVIIFTEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 271
[Close]
BLAST of Vigun08g064300.1 vs. DB:Swiss
Match: RN165_MOUSE (E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.593e-10
Identity = 35/99 (35.35%), Postives = 50/99 (50.51%), Query Frame = 1 
Query: 1147 SYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTYDT----DENCNQDKDDIKCCICQEEYVIGDEVGDLPCNHRFHVDCIQEWMGLKNWCPICK 1431
            SYEELL LE+R+G V+    +  +        Y+     D+    DE    D D+ KC IC      G++V  LPC H FH  C+ +W+ +   CPIC+
Sbjct:  239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDE-KCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 336
The following BLAST results are available for this feature:
BLAST of Vigun08g064300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
HIP1_ORYSJ4.547e-3548.43Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... [more]
MBR1_ARATH1.518e-3247.68E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis th... [more]
MBR2_ARATH1.361e-3150.43E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis th... [more]
RHG1A_ARATH1.838e-3143.24Probable E3 ubiquitin-protein ligase RHG1A OS=Arab... [more]
ZFP1_ORYSJ3.620e-2847.75Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... [more]
BB_ARATH1.219e-1337.00E3 ubiquitin-protein ligase BIG BROTHER OS=Arabido... [more]
BBR_ARATH1.700e-1136.00E3 ubiquitin ligase BIG BROTHER-related OS=Arabido... [more]
RMR4_ARATH3.878e-1140.58Receptor homology region, transmembrane domain- an... [more]
AIP2_ARATH4.663e-1038.81E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis th... [more]
RN165_MOUSE5.593e-1035.35E3 ubiquitin-protein ligase RNF165 OS=Mus musculus... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 436..476
e-value: 2.2E-6
score: 37.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 435..477
e-value: 5.7E-11
score: 42.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 436..477
score: 11.619
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 397..481
e-value: 1.6E-17
score: 64.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..311
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 213..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..119
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 429..480

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g064300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g064300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g064300.1; organism=Vigna unguiculata; type=mRNA; length=1935bp
AGATAGTGATTAAAGAAATGTTGTCTGCCTCAGCATTGGATCATTCACAC
ACGTTTTGCACTTTtccctctctctttctttctctctctaaatgctttct
ttctctctcAGACTCTGAAACTCTTTTCTCTATTTTATTTTAAGGCCAGA
GAGGAAGAACATCACCACCAACAGCAGCAGCAGAAAAAGATTTGGCGGTA
ATAAGAAATTGATGGATGAGTATTCTGGTAGAAGAGGTGTGGATGGGGTG
GCAGTCCCTAGAAAGGGGATGAACCATGTATTTAGAGATACTGCTAATAC
TAGAGAACGAACAGGTCAAGTTTGCAGCAAATTGGGTTGCAGTAGTAGAG
CCAATATTCCCAAAGTTGCTCAAGCCAGATCTTCTGAAAAGGGTAAATCT
GTGAGGCCTGTATTCCAGTCTTCTTCAAGTAGCAAGGATGAAATTGGAAG
TTCCTCTAGATCTACTAGTAACCCAGCAAAACGAACTACGGAACCTCAGA
AAGTATTTCCCTCTCAGTTTGAGGCAGATTCACCTGAGAGTAGTAGTGTA
CAGGATGAACCAGAATCTTCAGAGCTCATCCCTCCATCAGAGGAAATTCA
GAGAGGGGCTAAATCCAGGGGGCCAAGTTCAGAGTCTAGTAATGCAAGAC
TGATGGAAGTAGGAAGCTCCAGTACAGTATCAAATACTAGATCTCAAAGG
AATTTAAATCAAAGACCTGGATTGCGTGGACAAGAAATCAAAAGCACTGG
TCCAGTGATACATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGAT
GCAACACTATATCTTATGTTATCCCATCTAGTTGTTCATCATCAGATTCA
AGTCATAATAGAAGGAAGGATACAACAAAAAAGAGAGACGGTGAAGGGGA
AAGTAGTTCCACTGTCAGAGGGAAGAATGTCATTGGATCTTCATCGGAAG
GACGGAGTTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGA
ACAAGAAATACATTTTCTCACCGGAATACCAGTTTGGCACCAGTAAGAAC
TCAAAGATCACTTAGTGGTCATGTCAGGGCAAGGATTTCTAGCCAAGGAA
ATGAAAACCCTTTGGCAACCAGCAATAGCAGTGAGGATTTACCTCTGTCT
CCTCCTGCAGAAGATGACATAACTGATTCTCTAAATGGGGACAGCTTTTG
GCATTACAATATGTCCAGTATTGAAGGGGTATTGTTGGCCCTTGAGAGGA
TTGAACAAGGTGGAGAGCTAACCCGCGAGCAAATTACCGACATCTACGAG
AATGGATTAAACTTTTATGATCACCATAGAGACATGCGGTTGGATATTGA
TAACATGTCCTATGAGGAACTCTTAGCTCTGGAAGAGAGGATGGGAACTG
TTAGCACAGCTCTATCGGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGT
ATATATCAGTCTCCGCCTACATATGACACAGATGAGAATTGCAATCAGGA
CAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGAG
ATGAAGTTGGGGACCTGCCATGCAATCATAGGTTTCATGTGGATTGTATA
CAGGAGTGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGC
TGCACTGTCTAATAAttcatcttcatctcattgattgcattgttcctttt
acttttcattttGTACAAAATACAGTTTCAGATTTCCTCTCTTTTTCCTA
TTCATCATATTTACATAGCCAATGTCTTCATCCGTACACTAATAAGCTAA
GCCACTGGGTTGATGGACTTTGAAACTTCTTTATATGTTGCGGATGAAAA
TTCTCTCTTCTAATCTTCATCTTTATTTAAGGTTACCTAAACATGTTTTT
AATCTTTCCAGAGAGTGGATTTTTCTCCCTTTTTT
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protein sequence of Vigun08g064300.1_Vu_IT97K-499-35_v1.1

>Vigun08g064300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g064300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g064300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=491bp
MDEYSGRRGVDGVAVPRKGMNHVFRDTANTRERTGQVCSKLGCSSRANIP
KVAQARSSEKGKSVRPVFQSSSSSKDEIGSSSRSTSNPAKRTTEPQKVFP
SQFEADSPESSSVQDEPESSELIPPSEEIQRGAKSRGPSSESSNARLMEV
GSSSTVSNTRSQRNLNQRPGLRGQEIKSTGPVIHAVSSRYGLRNIRCNTI
SYVIPSSCSSSDSSHNRRKDTTKKRDGEGESSSTVRGKNVIGSSSEGRSS
GSRNGISISDSRRTRNTFSHRNTSLAPVRTQRSLSGHVRARISSQGNENP
LATSNSSEDLPLSPPAEDDITDSLNGDSFWHYNMSSIEGVLLALERIEQG
GELTREQITDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTA
LSEEALAESLKRSIYQSPPTYDTDENCNQDKDDIKCCICQEEYVIGDEVG
DLPCNHRFHVDCIQEWMGLKNWCPICKLSAALSNNSSSSH*
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mRNA from alignment at Vu08:8970052..8975388-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g064300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g064300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g064300.1; organism=Vigna unguiculata; type=mRNA; length=5337bp; location=Sequence derived from: Vu08:8970052..8975388- (Vigna unguiculata
AGATAGTGATTAAAGAAATGTTGTCTGCCTCAGCATTGGATCATTCACAC
ACGTTTTGCACTTTTCCCTCTCTCTTTCTTTCTCTCTCTAAATGCTTTCT
TTCTCTCTCAGACTCTGAAACTCTTTTCTCTATTTTATTTTAAGGCCAGA
GAGGAAGAACATCACCACCAACAGCAGCAGCAGAAAAAGGTGAAAATTTT
CTATTGAATTCACTTGAAAATTCTCCTTTTTTTTTCAACCCCATCTTTCC
TTTTCCTTAATCCTTTCTTCTTTTTGGACGAAGAAATTCGGGTAATCATA
ATGGACCGGAATTGAAACTGTATGTACTATTTGATTTTGTTTTTGTGGGG
GTGATCATCGAGATGCTCAGAAATTGAGAACATGGGTTCATTGGAATTTT
GATTCAATCTAAAAAAAAAAACTTCTGTTTTTTCATTGTTGTTGTTGAAC
AAATTAATTGGAAATTTTATTGAAAAGGGTTTGCTTGTTTTATTTTATTC
TTTTGATTTTTTTTTCTTTTGGTTCACTGTTGGTTTGTTGTGTTAGAGCT
AATTTTGAGCGCTGAAATATCGGGAATATGGGTATTTTGTTTTTTATTAA
TTTATTTTAATTTATTTCTTGGTGATTATTATGCGGTGTGGTGAAACTGT
GTTCTTTATTAATGAAGCGACACCCTCTTTTTGGGGATGAAATTATGGGT
GATTTAGTTACAATTAAAAACCAAAACAACTAATATTTTGTTGTTGTTGA
GGACTTTCATCTCAAGACTGAGTTTGTTAGTTGATTCTTCTGTGATCAAT
TGTTAAATGAAGTTACTTTGCAGTTTACTTCACGTTGTTTTCTGTTGATC
ATCTTCTAATATGTATTGTTTCCTCTTTTTCTTTTCCCTGTTTTGAATTG
TTCATTTTAGCTGAATATTATTTTTAATGATTCAGATTTTGGGGTTCATT
GAGAGTACTAGTACCCTAATTGAATAGCTTTAACGTGTGTTAATATGGGT
ATGGTTTGATTCTCTAATCAAGCTTTGTCTAGAATTTGGATTCTCGAGTT
TGTAGTGTTGTCTCTATGTTGCGCCTGTTTTTAGTGTTGTGTCTGTGTTG
TGCCTTCGTAATACAGACATTGATTTTGATGTTTTAAAATATATTAAAAA
TTGTTTAATATACCAACTTTAGTGTATTTTGAAGGCTCTACAGAGGAATA
ACACCAAAATACTTGCAAAGTTTGTCTTTTATGTCTTTTATGTCTTTTAT
GTTCCCAGTTCTACTCTTTAGTAGAACCAAAACTAATCATATTTTTAACC
TTATTTGCTGTTGTTAAATATTATGTTTAATCTGTTTCGTTCTTCGGTGT
TTATTTGACAGTACCAATTTGAGATTGAACAGTATCCTATTCTCTCAGGA
TCTCCCTGTCTTTTGTATTCTATATAAAACAAAGTATTGGTATTTTTTCC
TTGGTGATTAGAAAACCTGTATTGATACATAAGCACACTATCATGGTTGA
AGATAGTAGTACAAAGCCATTGCAGTAACTCTTCCAGTAGTCAAATTAGA
CATACCGTTGTAAGTTTGTGGTTGAAGCTCTAAAACATGTTTTCATGGTT
TGTAACAGTCTGCTTGGAATATCCAATAATTTAATTTAGCTTCTTGCTAG
AAGTATTGACTGTATGGCAAATTCTTGTTGCTGATTTTCTTAAATGTTGA
TCATTTGAGTGTAGAGCGTTTTAATTATCAGGCGGATTACGTTCATGTAT
TCTGTTGTACTTGCTTTTCTCATTTTTTAACACCCCAAATCTAATTTGAC
TGCTTTATATTCTTTTTATAAGAATTATTCAATAAATGTGATTTGTTGTG
GCTCAAATTCCCAAAGGAAGTGTCTGATTGAGCATGCAAAATCTTACTTA
ATTGGCTTATCTTTGTCAAGCAATATATTTTATAAAGGAATGCCAGTAAG
GTGAAACAGGCATGGATTTTGGATAGACTTATAACTAAATAGAATAATGC
AACAATTGGCCCTTTGCTTGAAATTGTTTGTCAAAGGATTCTTACATGCT
ATCTGTGATGGGTTTATTTCAATTTACCAGAAGGAACTGTTCCTTATCCA
TTCTATGAACATTTAACAATGACATTTCTTTTATTATGGTCGCTGATTTA
ATGCCTATTGTTCAAGTTTTTCTTTCAAACTATGTTATTATTGCTTTGTC
CATGGTCATGATATTATTTAGTCTGTTGGCCCTGTTGGTGTTCAATTATC
TGATAACTACTATGTCACGTCAATTGTTGCAGATTTGGCGGTAATAAGAA
ATTGATGGATGAGTATTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCC
CTAGAAAGGGGATGAACCATGTATTTAGAGATACTGCTAATACTAGAGAA
CGAACAGGTCAAGTTTGCAGCAAATTGGGTTGCAGTAGTAGAGCCAATAT
TCCCAAAGTTGCTCAAGCCAGATCTTCTGAAAAGGGTAAATCTGTGAGGC
CTGTATTCCAGTCTTCTTCAAGTAGCAAGGATGAAATTGGAAGTTCCTCT
AGATCTACTAGTAACCCAGCAAAACGAACTACGGAACCTCAGAAAGTATT
TCCCTCTCAGTTTGAGGCAGATTCACCTGAGAGTAGTAGTGTACAGGATG
AACCAGAATCTTCAGAGCTCATCCCTCCATCAGAGGAAATTCAGAGAGGG
GCTAAATCCAGGGGGCCAAGTTCAGAGTCTAGTAATGCAAGACTGATGGA
AGTAGGAAGCTCCAGTACAGTATCAAATACTAGATCTCAAAGGAATTTAA
ATCAAAGACCTGGATTGCGTGGACAAGAAATCAAAAGCACTGGTCCAGTG
ATACATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACAC
TATATCTTATGTTATCCCATCTAGTTGTTCATCATCAGATTCAAGTCATA
ATAGAAGGAAGGATACAACAAAAAAGAGAGACGGTGAAGGGGAAAGTAGT
TCCACTGTCAGAGGGAAGAATGTCATTGGATCTTCATCGGAAGGACGGAG
TTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAA
ATACATTTTCTCACCGGAATACCAGTTTGGCACCAGTAAGAACTCAAAGA
TCACTTAGTGGTCATGTCAGGGCAAGGATTTCTAGCCAAGGAAATGAAAA
CCCTTTGGCAACCAGTGAGTTCCCTCATTTTGGTGATGTTAATCCTCACG
GCATTTCATGTCAGATTTCTATGGAGACTCCTTTAACTTGCTCAAGCTCT
TGTGATTCACCAGGCAATAGCAGTGAGGATTTACCTCTGTCTCCTCCTGC
AGAAGATGACATAACTGATTCTCTAAATGGGGACAGCTTTTGGCATTACA
ATATGTCCAGTATTGAAGGGGTAATTTTTTGGTTTGAACATGTGAGCACA
TATTCTAGTATTCCATGATGACATCAAAACTAAAGTACTATATTTTATTG
TATGTAGGTATTGTTGGCCCTTGAGAGGATTGAACAAGGTGGAGAGCTAA
CCCGCGAGGTAATTCTTGACTAAAAGTTAACTCAACTTAGCTTCCCAGTT
ATCTAACAACTTTCATCTTCTGTCCTTGCAGCAAATTACCGACATCTACG
AGAATGGATTAAACTTTTATGATCACCATAGAGACATGCGGTTGGATATT
GATAACATGTCCTATGAGGTATTTTAATGTCATGTTTCTTATTTCCTTTT
GTTGCATCAAACTTAGAATGATGGTTTGTGCTTTGTTGGCTGTACGGTAC
AACAGTTTTGGATAAAAATTTCTCAAGAATAATGCGTGTTCCTAAAAGTA
ATATTGGTGCTTAAAACCTTGGTCTAATTGATTATTATAGGTAGAATGTT
AAGGTGGAAGGTTGGAAATGTAACTTTGTTGAGGGAGGTGGCTTTTAGAA
GAGAGTGTTATCCTTAGGGATGTAGCACCCTTGGGATTAAAAATCTCGAA
GTTTTATTTTTTTTAGTTTATCCATTGTCAATTCTTATCTCCAAAAGTTT
CTGATTGATGACAGGAACTCTTAGCTCTGGAAGAGAGGATGGGAACTGTT
AGCACAGCTCTATCGGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTAT
ATATCAGTCTCCGCCTACATATGACACAGATGAGAATTGCAATCAGGACA
AGGATGACATCAAATGCTGCATTTGCCAGGTATTTTTATAATATGTATCT
CGATGCTCACATGGAAAACAACTCATCATCATGGTCTTAATGCATCTGTG
TTACTGGGATTCAACTTGACAAATTTGAATTGATATCCAGATATATGGTT
TCTAGCAGAACCAAACAGTCTGTTGATGAAGGGCTAGTCATGTTCTGTAT
CAAACTTAATTATACTAAAAAATTTGAAGTAACTATGGTCATGTCTCCTC
TAACATTTCCATAAATGGAAAGACTAGCCACTAATGCTTTCAGACTCATA
AACCTTAAAATTATCACATGTGTCATTCCTGCATACCAAATCCGTTATTT
GAATGTCAAATAACCTAACTGTGTATACTTATCTACATCTCTTACCTTTT
ATATTTTTTAAAATAAAATCATATTAGGTATATCACTATGAACTTTGACA
TCTCAGTTATGCTGACATATACATTTTATATTTTTCACATACATAGTTTT
CAATCAAAAAACAAAGGGGACAATCAAAAGTTATCCACTTTGGAGATACC
AATAACATTTTCCTTTACATCTAGCTTCTACACTAAAGCCTTAGACCTTC
CTGTCTAGGAGAGGATAAGCATTAAGAATTTTGTTTCCATTTCTCAAAAG
AGGAACATGTAGATGTTTGGTGCAATGTATGGAAATTAAACTCTTTCATT
TTATTGATTTGGATACATTTACTTAATATGCAGGAGGAATATGTTATTGG
AGATGAAGTTGGGGACCTGCCATGCAATCATAGGTTTCATGTGGATTGTA
TACAGGAGTGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCT
GCTGCACTGTCTAATAATTCATCTTCATCTCATTGATTGCATTGTTCCTT
TTACTTTTCATTTTGTACAAAATACAGTTTCAGATTTCCTCTCTTTTTCC
TATTCATCATATTTACATAGCCAATGTCTTCATCCGTACACTAATAAGCT
AAGCCACTGGGTTGATGGACTTTGAAACTTCTTTATATGTTGCGGATGAA
AATTCTCTCTTCTAATCTTCATCTTTATTTAAGGTTACCTAAACATGTTT
TTAATCTTTCCAGAGAGTGGATTTTTCTCCCTTTTTT
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Coding sequence (CDS) from alignment at Vu08:8970052..8975388-

>Vigun08g064300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g064300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g064300.1; organism=Vigna unguiculata; type=CDS; length=1473bp; location=Sequence derived from: Vu08:8970052..8975388- (Vigna unguiculata
ATGGATGAGTATTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCCCTAG
AAAGGGGATGAACCATGTATTTAGAGATACTGCTAATACTAGAGAACGAA
CAGGTCAAGTTTGCAGCAAATTGGGTTGCAGTAGTAGAGCCAATATTCCC
AAAGTTGCTCAAGCCAGATCTTCTGAAAAGGGTAAATCTGTGAGGCCTGT
ATTCCAGTCTTCTTCAAGTAGCAAGGATGAAATTGGAAGTTCCTCTAGAT
CTACTAGTAACCCAGCAAAACGAACTACGGAACCTCAGAAAGTATTTCCC
TCTCAGTTTGAGGCAGATTCACCTGAGAGTAGTAGTGTACAGGATGAACC
AGAATCTTCAGAGCTCATCCCTCCATCAGAGGAAATTCAGAGAGGGGCTA
AATCCAGGGGGCCAAGTTCAGAGTCTAGTAATGCAAGACTGATGGAAGTA
GGAAGCTCCAGTACAGTATCAAATACTAGATCTCAAAGGAATTTAAATCA
AAGACCTGGATTGCGTGGACAAGAAATCAAAAGCACTGGTCCAGTGATAC
ATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACACTATA
TCTTATGTTATCCCATCTAGTTGTTCATCATCAGATTCAAGTCATAATAG
AAGGAAGGATACAACAAAAAAGAGAGACGGTGAAGGGGAAAGTAGTTCCA
CTGTCAGAGGGAAGAATGTCATTGGATCTTCATCGGAAGGACGGAGTTCT
GGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATAC
ATTTTCTCACCGGAATACCAGTTTGGCACCAGTAAGAACTCAAAGATCAC
TTAGTGGTCATGTCAGGGCAAGGATTTCTAGCCAAGGAAATGAAAACCCT
TTGGCAACCAGCAATAGCAGTGAGGATTTACCTCTGTCTCCTCCTGCAGA
AGATGACATAACTGATTCTCTAAATGGGGACAGCTTTTGGCATTACAATA
TGTCCAGTATTGAAGGGGTATTGTTGGCCCTTGAGAGGATTGAACAAGGT
GGAGAGCTAACCCGCGAGCAAATTACCGACATCTACGAGAATGGATTAAA
CTTTTATGATCACCATAGAGACATGCGGTTGGATATTGATAACATGTCCT
ATGAGGAACTCTTAGCTCTGGAAGAGAGGATGGGAACTGTTAGCACAGCT
CTATCGGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTC
TCCGCCTACATATGACACAGATGAGAATTGCAATCAGGACAAGGATGACA
TCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGAGATGAAGTTGGG
GACCTGCCATGCAATCATAGGTTTCATGTGGATTGTATACAGGAGTGGAT
GGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCTGCACTGTCTA
ATAATTCATCTTCATCTCATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD