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Transcript Overview
| Name | Vigun08g107300.1 |
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| Unique Name | Vigun08g107300.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1238 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun08g107300.1 | Vigun08g107300.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun08g107300.1_Vu_IT97K-499-35_v1.1 | Vigun08g107300.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun08g107300.1.v1.1.CDS.6 | Vigun08g107300.1.v1.1.CDS.6_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g107300.1.v1.1.CDS.5 | Vigun08g107300.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g107300.1.v1.1.CDS.4 | Vigun08g107300.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g107300.1.v1.1.CDS.3 | Vigun08g107300.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g107300.1.v1.1.CDS.2 | Vigun08g107300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g107300.1.v1.1.CDS.1 | Vigun08g107300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun08g107300.1.v1.1.three_prime_UTR.1 | Vigun08g107300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun08g107300.1.v1.1.five_prime_UTR.1 | Vigun08g107300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | COILS | Coil | Coil | coord: 17..37 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 41..56 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 31..68 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g107300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g107300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g107300.1; organism=Vigna unguiculata; type=mRNA; length=1238bp
AAAAAAAAACAGAAAGAAAGCCTATGAATTGCATTGGGAGCAGCACAATC
CTGACGCTGCTGTTGTTTGTTTCTGTTCTTCTTTCCTTCGTCCTCGAAAA
CACAACCGACAACCTCGTCCGcaaaattaacattgaaattcaaaattgct
aaaattaagaaaacaaaaAGTCACGTGTCTTCCACGCCGCCACCAATAAC
TCTCTTCTCTCTCCTCTCGCCACCGTCGTCAACGCACAAACACCAACCCG
TTCCCCTTTCCGAACCGGAATGGAGGTTGGGGTCTCCGATCCGAACCCGA
ACCCGGTTCGGGTGAAGCGGAAAACCCTTGAGGCCATGCTGGAACAGTGT
CAGAGAGCCCTTGAACTCATCAATGCTTCCGATGGACAACAGCaagaaca
agaagaggaggaagaagaagaagaCTCTGACGAATCGCATCCTTCCACGC
CCCCCGATCCAGAAACCGATCAGTTGTGTGACCTAATCAAATCTAGAGTT
GAATGTCCTGACTTCCTTGAAAAGTTGGAGCATGCACAAGCATCAGTTTC
TCTCAGTGTAGTTGAAGAAGGTGGTTCTTGGGATTTTGTTAACGAAAATG
ATCTTTGGGAAGGTGAAGAGGCGAACTCAGACCAAGAAGATTATGTCCTT
GTTAAACAAGAAGATATAGTGGAAGGAATAGCATGCTTCATGGCTGCATA
TTTGTTGTCCCTCAAGCAAACCAAGGATTTAACCCCAAATCAACTCCAGG
ATGCTCTTAGCAAGACATTTTCCGTGCAAAAGAAAAAGGGAAAGCTTCGA
AAGGCATGGGATGGGAGCAAAGTTGTTTATAATGTTGCATCATGGGGAGC
TACAGCCATTGGGATATATCAAAATCCTGTTGTTGCAAGGATTGCCACTA
AAGCATTTTGGACTTCTTGCCAAGTTATATCAAAGCTACTGTGATCTGCC
GATGCAGCTTGAAGAAAAGTTGAACTGTAGTAAATTGACTGTTGTGTATT
TGCTTGTGCTGCAATTAAGCTTGGTTTGGTACACTCCCTCTGCACCGAAG
TTCAATTGATCTTAATGTAGTTTGATCATGTAAATATCTTTATTCAAATG
TCCCGAGTGCTATTCAAATTCTTATTCACAACTTGGCCCTGAACACATGA
AACATATCCTTGCTTTCTCCAGCTGTACCTAACTCAGATTCCGGCCATAA
TTCAAGTTTGATTGAAATAATAAAGTCGTTCATTTTTT back to topprotein sequence of Vigun08g107300.1_Vu_IT97K-499-35_v1.1 >Vigun08g107300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g107300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g107300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=225bp
MEVGVSDPNPNPVRVKRKTLEAMLEQCQRALELINASDGQQQEQEEEEEE
EDSDESHPSTPPDPETDQLCDLIKSRVECPDFLEKLEHAQASVSLSVVEE
GGSWDFVNENDLWEGEEANSDQEDYVLVKQEDIVEGIACFMAAYLLSLKQ
TKDLTPNQLQDALSKTFSVQKKKGKLRKAWDGSKVVYNVASWGATAIGIY
QNPVVARIATKAFWTSCQVISKLL* back to topmRNA from alignment at Vu08:26675491..26678842- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g107300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g107300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g107300.1; organism=Vigna unguiculata; type=mRNA; length=3352bp; location=Sequence derived from: Vu08:26675491..26678842- (Vigna unguiculata
AAAAAAAAACAGAAAGAAAGCCTATGAATTGCATTGGGAGCAGCACAATC
CTGACGCTGCTGTTGTTTGTTTCTGTTCTTCTTTCCTTCGTCCTCGAAAA
CACAACCGACAACCTCGTCCGCAAAATTAACATTGAAATTCAAAATTGCT
AAAATTAAGAAAACAAAAAGTCACGTGTCTTCCACGCCGCCACCAATAAC
TCTCTTCTCTCTCCTCTCGCCACCGTCGTCAACGCACAAACACCAACCCG
TTCCCCTTTCCGAACCGGAATGGAGGTTGGGGTCTCCGATCCGAACCCGA
ACCCGGTTCGGGTGAAGCGGAAAACCCTTGAGGCCATGCTGGAACAGTGT
CAGAGAGCCCTTGAACTCATCAATGCTTCCGATGGACAACAGCAAGAACA
AGAAGAGGAGGAAGAAGAAGAAGACTCTGACGAATCGCATCCTTCCACGC
CCCCCGATCCAGAAACCGATCAGGCAATTACTCTCTTTTTTCTCTTCCAA
CTTAGATACTTGAAATTTCTATCCGTTAGGGTAAGCGTTTTTGGGATTTT
CTATGTTATTTGTTCGCATTGTGCGTTTCGAGCGAGGAAAACTTGCCTTT
TTATGTATGATTTATGTGATGAATAACAAAAGGCTTCTCAGTCCCGTGTT
AGAGAAAAAATGAGGGCTTCTTTGATAAACGATTACTTTGAATTTTTGAA
GTGATAAAGCTTCTTTTTCTTTTTTTTTTCTTTGTAAAACTTAGATGCAC
TTTTTAGATACCTTTTATGCCGTTTCGTATCAAGATTGAAGATTTACCCT
AATAATCAGCGTAATAAAAGTTTGCATTGAAGGTCGACATTGGTCAATAA
GCGAAATTCCAATTCTGGTTGAAGAACAGTGTAAAACGACTGTCTAATAG
CGTGTTTTGATTACCGTTTTAAAGGCAAAAAAAAAAATGTTCGTTGGTAT
TTTCCAAAGCGCAAAAAGGATTGGCAAGATAAGTGTTGGATCGAAGCTAA
TGTGGGGTTTAAGTTGGTGTCAACTGTTTCCAAACACACAACTGTCCTAT
TTTGTTGTGCTAATGCAAACAACCATTTACAACAAAGGTGTTTTTGTGTC
TGTTTGACGGTAGCCTTTTTATGTGGAACAAGTACTTCTTCTAGATGTAA
TTATTGTTAGTGCTGTGCTTGTATATTGTAGTTGATGCTATGTGTATTAT
GCATTGACGATTTGTTAAGAAGGATATTTGATATTTTGTTTGAGATTTAA
CTTGATAGCTTGGAATGTTGTGTGCTCCATGCAGTTGTGTGACCTAATCA
AATCTAGAGTTGAATGTCCTGACTTCCTTGAAAAGTTGGAGCATGCACAA
GCATCAGTTTCTCTCAGTGTAGTTGGTACCGACTCGTGCAAATGTTCTTT
TTTTGTTTGGGTCTTTACTTTTAGAATGCTAATGAAAAAAGCTTGGTTTT
GACAGAAGAAGGTGGTTCTTGGGATTTTGTTAACGAAAATGATCTTTGGG
AAGGTGAAGAGGCGAACTCAGACCAAGAAGATTATGTCCTTGTTAAACAA
GAAGATATAGTGGAAGGAATAGCATGCTTCATGGCTGCATATTTGTTGTC
CCTCAAGCAAACCAAGGTTTGTTATCAGTGTAGTCTTTTGTTATCTCAGA
CTCTCTACCGTACCCATCAATTTAGGGCCTAGGTATAAGTTACTCTTAAT
TGTGTCACTCTTAACTGCTATAATCTGAAAAATCTGAAAGTCTAAATCTG
TTGACTTAAAAGCACCTTCTGAGTTCTTGTATATGCCTATGTAACAGACA
CTGCATATGCTTCTCAGTTAGGATGCAAATTCCAGAAACAGAAAAAAGTA
CTTGTATGTTACCTGAAAGGTTGTGGGGATTGTTCCTCAACCATTTGTAA
AGTTGTCTTGTATGTTTACTGCAATGCTGTTTAAGCGAACATGACTATTT
GGTGCATTAAAATGTTTTTCCTTCCATGGTTTATAGTGAAGTTTAAGTTT
CTAAAGCTTATTTTCTATAGGAAGATGTCCAATTTATATCTGGCGAAGTT
TGAATATCAGAAAATAGTTTGCAAATGAGTATTGCATTAATATTGTTTTC
CTTTTGTCTCTGGCTTTGATGTTCAATATCTGTTTTTATGGAAATTTTTT
CTTTCAAAACTATTACATTGAGCACTATAGTATGATAAAGTTCAACCTAT
TTCTTTTTGTCCCCGTATTTTAAATTTGGTCGGATTTACGATTTACAGTT
CAAATATTTAGTTCGGTGATTCATAATTTAAATTGCAATTTGAGCACTTC
AATTATCTCTGATTGAGTATTTTGCCTTTTGCAGGATTTAACCCCAAATC
AACTCCAGGATGGTGAGTTTGGTTGCTTCCTCCATAATATATGGTCTTAT
TTCTTGTTTTGTCCACAACTCCATACGCTTGAGTGGAAAATGGGGAAGAA
AGTAGAAGCATCTCCTTGGCTACCTTACTCATTCTAGATAAAGTTTTGTA
CTCTACTTTAGCCAAGTATTACCTAGATAAAGGAATGGGAAAGAATTTAT
CATTTATGACTTTTTTGACGTGTTTTTATAGCTCTTAGCAAGACATTTTC
CGTGCAAAAGAAAAAGGGAAAGCTTCGAAAGGCATGGGATGGGAGCAAAG
TTGTTTATAATGTTGCATCATGGGGAGCTACAGCCATTGGGTAATGGCTT
TTTACCAAACACCCTGCTCTTCTCAGTAAATGTTAAGGAACTCATTAATG
TCCAACCTAGTTGATGTACCATGTAACATGTTTATCTATGCAGTTGGTTA
CTTCCTGTTAGTATAACTTCATTGATAACTTATGTGGGACACTGATTCTG
GGTTTAAACTGTTGTCAATTTGTTTTTATATTTAGTAAAGTGCAGAAAAA
TTAGTGTGACTCTTTTACCCTCTTCTGAGATCATTGTTTAATTTTTATTG
ATATCTTTCACTTTTTCTCTTGACAGGATATATCAAAATCCTGTTGTTGC
AAGGATTGCCACTAAAGCATTTTGGACTTCTTGCCAAGTTATATCAAAGC
TACTGTGATCTGCCGATGCAGCTTGAAGAAAAGTTGAACTGTAGTAAATT
GACTGTTGTGTATTTGCTTGTGCTGCAATTAAGCTTGGTTTGGTACACTC
CCTCTGCACCGAAGTTCAATTGATCTTAATGTAGTTTGATCATGTAAATA
TCTTTATTCAAATGTCCCGAGTGCTATTCAAATTCTTATTCACAACTTGG
CCCTGAACACATGAAACATATCCTTGCTTTCTCCAGCTGTACCTAACTCA
GATTCCGGCCATAATTCAAGTTTGATTGAAATAATAAAGTCGTTCATTTT
TT back to topCoding sequence (CDS) from alignment at Vu08:26675491..26678842- >Vigun08g107300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g107300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g107300.1; organism=Vigna unguiculata; type=CDS; length=675bp; location=Sequence derived from: Vu08:26675491..26678842- (Vigna unguiculata
ATGGAGGTTGGGGTCTCCGATCCGAACCCGAACCCGGTTCGGGTGAAGCG
GAAAACCCTTGAGGCCATGCTGGAACAGTGTCAGAGAGCCCTTGAACTCA
TCAATGCTTCCGATGGACAACAGCAAGAACAAGAAGAGGAGGAAGAAGAA
GAAGACTCTGACGAATCGCATCCTTCCACGCCCCCCGATCCAGAAACCGA
TCAGTTGTGTGACCTAATCAAATCTAGAGTTGAATGTCCTGACTTCCTTG
AAAAGTTGGAGCATGCACAAGCATCAGTTTCTCTCAGTGTAGTTGAAGAA
GGTGGTTCTTGGGATTTTGTTAACGAAAATGATCTTTGGGAAGGTGAAGA
GGCGAACTCAGACCAAGAAGATTATGTCCTTGTTAAACAAGAAGATATAG
TGGAAGGAATAGCATGCTTCATGGCTGCATATTTGTTGTCCCTCAAGCAA
ACCAAGGATTTAACCCCAAATCAACTCCAGGATGCTCTTAGCAAGACATT
TTCCGTGCAAAAGAAAAAGGGAAAGCTTCGAAAGGCATGGGATGGGAGCA
AAGTTGTTTATAATGTTGCATCATGGGGAGCTACAGCCATTGGGATATAT
CAAAATCCTGTTGTTGCAAGGATTGCCACTAAAGCATTTTGGACTTCTTG
CCAAGTTATATCAAAGCTACTGTGA back to top
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