Vigun08g137400.1

Transcript Overview
NameVigun08g137400.1
Unique NameVigun08g137400.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length718
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:30955746..30959136 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL347Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL532Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL533Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL558Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL706Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL137Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL408Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0050Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL0291Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0193Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0195Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0428Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0636Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0856Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1203Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL190Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL703Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vrvvuL082Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL447Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL377Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL576Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR390Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR396Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL130Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL378Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
carvuL140Cicer arietinum
carvuL390Cicer arietinum
vuvvaR734Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL287Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL440Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL301Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL460Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL482Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL618Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR446Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
jg34182.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
XM_058888751.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.model.Chr08.1456Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_035188Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_15678Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_012713008.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_24075Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
PvulFLAVERTChr08.1543Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014647302.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan07g083300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.03G103500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-TanjilR_18822Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigst.03G072200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g137400.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g137400Vigun08g137400_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g137400.1Vigun08g137400.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g137400.1_Vu_IT97K-499-35_v1.1Vigun08g137400.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g137400.1.v1.1.CDS.2Vigun08g137400.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g137400.1.v1.1.CDS.1Vigun08g137400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g137400.1.v1.1.three_prime_UTR.1Vigun08g137400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g137400.1.v1.1.five_prime_UTR.1Vigun08g137400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
[Close]
BLAST of Vigun08g137400.1 vs. DB:Swiss
Match: QCR8_SOLTU (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 9.228e-39
Identity = 59/72 (81.94%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 MGKQIVPVKSVIYALSPFQQKIMTGLWKDLPTKIHHKVSENWINATLLLGPLVGTYAYVQNYLEKEKLHHRY 216
            MGKQ V +K+V+YA+SPFQQKIM GLWKDLP KIHHKVSENWI+ATLLLGPLVGTY+YVQ++LEKEKL HRY
Sbjct:    1 MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQHFLEKEKLEHRY 72
The following BLAST results are available for this feature:
BLAST of Vigun08g137400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
QCR8_SOLTU9.228e-3981.94Cytochrome b-c1 complex subunit 8 OS=Solanum tuber... [more]
back to top
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020101Cytochrome b-c1 complex subunit 8, plantsPFAMPF10890Cyt_b-c1_8coord: 1..72
e-value: 2.1E-34
score: 117.7
IPR036642Cytochrome b-c1 complex subunit 8 superfamilySUPERFAMILY81508Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 11..64

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g137400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g137400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g137400.1; organism=Vigna unguiculata; type=mRNA; length=718bp
TTTTCTAGATGTGTGGAGAGTTTGAGGCGGAAAATAGTGGTACGCAGTCT
TATTGGACTGGACTGGTAAAGAGAAGATCCAATCCAATTACAAACCCAAC
ACGAGAGTGAACTCAATCTAAAAATTAGGTTCACATTTTGTTTCTTTCAT
TTCGTTTCAGATTCACATTCATTGATCTGTGTAGCGTGGTTGTGCGGTAG
TTGAGAAGATGGGGAAACAGATTGTGCCGGTGAAATCAGTGATCTACGCT
CTCTCCCCTTTCCAGCAGAAGATAATGACGGGTCTCTGGAAGGACTTGCC
CACCAAGATTCATCACAAGGTCTCCGAGAATTGGATCAACGCCACTCTCT
TGCTCGGTCCCCTCGTCGGCACCTACGCGTATGTTCAGAACTACCTGGAA
AAGGAGAAGCTTCATCACAGGTACTGAGCTCTTGCAAGAGCTGATTGGAT
AAGCTTCAAGTTTGTTGCCTTGCACTTGTTTACGCACCTAATAATGTGAC
ACAAACTTGCTCTTACCCTTGTTTTGAGATGTCTCGAGTTTTGAGCCTAA
CTTTCAGTGTTTATTGATGTTCTATTTCATTTTCCTATTCTATACTACTT
TATATTTTAGAAGACAATTTACGTGTTTTGTCAATAATGGCAGAATTAGT
TTGTGTTGTATTTTTTTTTTAATTCAAACAAGCATTCTGATGCTTTCTAA
ATTTTTATGCTTATTATG
back to top

protein sequence of Vigun08g137400.1_Vu_IT97K-499-35_v1.1

>Vigun08g137400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g137400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g137400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=73bp
MGKQIVPVKSVIYALSPFQQKIMTGLWKDLPTKIHHKVSENWINATLLLG
PLVGTYAYVQNYLEKEKLHHRY*
back to top

mRNA from alignment at Vu08:30955746..30959136-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g137400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g137400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g137400.1; organism=Vigna unguiculata; type=mRNA; length=3391bp; location=Sequence derived from: Vu08:30955746..30959136- (Vigna unguiculata
TTTTCTAGATGTGTGGAGAGTTTGAGGCGGAAAATAGTGGTACGCAGTCT
TATTGGACTGGACTGGTAAAGAGAAGATCCAATCCAATTACAAACCCAAC
ACGAGAGTGAACTCAATCTAAAAATTAGGTTCACATTTTGTTTCTTTCAT
TTCGTTTCAGATTCACATTCATTGATCTGTGTAGCGTGGTTGTGCGGTAG
TTGAGAAGATGGGGAAACAGATTGTGCCGGTGAAATCAGTGATCTACGCT
CTCTCCCCTTTCCAGCAGAAGATAATGACGGGTCTCTGGAAGGACTTGCC
CACCAAGATTCATCACAAGGTCTCCGAGAATTGGATCAACGCCACTCTCT
TGCTCGGTCCCCTCGTCGGCACCTACGCGTAACTCCCTCACTCTCTCTCT
GTTAGGGTTTCCTTTTTTTTACGCCATGATTATGTATTATTTGTTTATCG
TTGTGAATTCAATCGAGTGATGGTGAACGGTTAAACTTGTTGGTTTTGGA
CCGGAATTACTCGGTCCCCTTGTCGGTACCCGCAGTAATTCTCTCTACCT
CTCTATCTGTGTTAGGATTTCCTTTTTTCTATGTTTTACACCATGGCTAT
GTATTACTTGTTCATCGTTGTGAATTCGGTCGAATGACGATGAACAGTCA
AACGTTGGTTTGGACCGGAATGGGTCTGGAACCTTGCTGGAAGAAGGTGA
TATGTTCTTATTTGTCAGGGAAAAAGGAACGAATCTGTTTCGACAAACAC
TGAATTTGTTGGTGATGTGCTTAGGGTTGGTGGTATTGAAATTGGGAGGA
GAGGAATAGTATAAGCACATAACCTAAAGATTTTGTGACTCAAATTTAAT
TAACCTCAATTTATAATCTAATCATGGTTATAATAGTATCCGTCATGAAT
ATAAGACAAGTAAAACTAGAAGTCACGGCCAACACATCCACTAAACACGC
AATCAAGGCTTTGTAGTGCTTTCTGAGGGTTAAAGATTGTCAATGTCTAG
TACTCCTTGGCCTTGGTCCGTACATGTTAGTTGATAACATTCAGCCACCC
ACCCACAATTCAGTCACTTGGATGCAGGGCAGAGAGCCTTGAGGAAGCCC
TATTCACCACCAGCAACTTAGTCTGATTGTTTCTGCTTTGGAAACTCCAT
TTGGGTAAACATGGTTTTACGAGTTAGTGATATACACTCAGGCTCAGTGA
ATTCAATGGGGCTGAGTAGGGTATCTATCTGTTGGATAAATATATGCAGG
TCATACCTGTCTCCATATCCTTGCATGTATATGTTATATGTTATGCAGGT
ATCCATATAAAAATATAATATTTACGGATACATGTGAATATTTACAAAAT
AAACATTAAATTATTTAACATATTTTAACCATAAATTTAAATAAAATATA
ATACTTAACATTCATAAATTTCAAACAAAATCCAAATAGTCCATTTAAAT
AGGGTTGAATGACAACTTAAAAAAAATGGCAACTTTTTAAAACCAATTGA
AAAAAAAAACTCATTCAAAATCTATGTATTAATATTTCAATCATGATTTG
TTTTTTGATTTGACTTAGAGTATGGTAAGTACGGGTATTCACGGGTATAT
ATACTATGATATCCTTATCTGCCTCGTTAGTATACGGGTATTAAAAAACC
CATCTGTTATCCGGGTATCCATTCACCATTTCATACCCATTCTGGATTTT
ATCAACAGATACCCACGAGTATGGATTTTTTTTGACATCCCTACTCAGGT
TGAGGATTGAAAGAGACAATTATTGACTTGAGCAGAACAAATACTCTTGC
CTGGATCACCAGCTAAGTCCCCGACAGGACTCCGTGACAAATGTGGTATG
GGAGGAGAGATAGCCCGAAGACTAGGCACCCTTGAAAGGGAGGGGGCATA
AAACTCATTCTGGTCCTTAATACAAGAAATCATTCAGAAGATATTGATGG
TCCTTTATATAAGCTATCTTATGATTTCTAGTAGGAATGTAATATATTTT
CTCTCTATTTTTCCCATATTTATCAATTGGTGCATAGTGCTTTCAAACTG
AAATTTATTCACATCACTCGCAATAGGTCAATAACCAGCCAACTTATTTT
TATTGGTTGCTCAGTCCTGCCTCTTAAATGGCCGGGTGTGTAGATTTAAA
CCCCCTGTTTCAGTGATTAGATAAGCATGCTTGGCGTTGGTATAGTTTAA
ATCTGAGTCTTTGGGGAATAATTGAATTGAAGCTCCCGCACGGAAGTGTT
CCGTGCAATATTATGTGATCTTTTGAGGAAGATTGTAATCTTAACAACGT
TGGTGCTATATGTTACTATATTTTGCAATGCAGTTATGCAAAATATTTTG
TACATCACCTCCCATGAAAAGAAACTAAGAAAAAAAGGGTTTGGGTGGAA
TGAATAGGTTCATTCCAATTCATCCTATTTTAAAATTAATGTATGTCTTT
TTATTCCACTGCATTATATTCCCTTCCCTCAATCTGATGTTACCCTCAGC
AACCATTCTGCAATATCTTCCGATTAAAAGTTATGAGTAAACAAAATTTA
ACTTCATTTTTTATTTGGTATTGGACTTAAAATAGCCAGTAATTCTATGG
AGAGGTGGATTGGAAGATGAGAAAATTAATGGTGTATTAGTTGGTCTATA
ATATGGAAAATTACGCTAATCATATGTAAAATTTCGTGAAATACACTTTC
TGCTTACGTTAACTTCTCTAATAATAAGTGTTTAGTGTAATGTTTTTAAA
ACAATTGCGGAAAGTTAGTGTAATGTAATCGTGGTGACAGATAATGTTTT
TAAACAATTAAGGGATGTGAATGTATTGCTAGAATAAGCAAACAATGTAT
GTATGTAATTTGACAAAATTCAAAGAGTAGTTAGTATAATTTACTCTATA
ATATATCCTGTCATGAATCTCTAAGTGCATCTTATGGTGACAAGTTCAAC
CTCTTGATTCACCTCTCCATAAGCTGAGTAGATTTGATTGATCATCCATC
TCTCTGATGCTGGTTAAGTTGTATGTCTAATATGGTTTTGGATGGATGCA
GGTATGTTCAGAACTACCTGGAAAAGGAGAAGCTTCATCACAGGTACTGA
GCTCTTGCAAGAGCTGATTGGATAAGCTTCAAGTTTGTTGCCTTGCACTT
GTTTACGCACCTAATAATGTGACACAAACTTGCTCTTACCCTTGTTTTGA
GATGTCTCGAGTTTTGAGCCTAACTTTCAGTGTTTATTGATGTTCTATTT
CATTTTCCTATTCTATACTACTTTATATTTTAGAAGACAATTTACGTGTT
TTGTCAATAATGGCAGAATTAGTTTGTGTTGTATTTTTTTTTTAATTCAA
ACAAGCATTCTGATGCTTTCTAAATTTTTATGCTTATTATG
back to top

Coding sequence (CDS) from alignment at Vu08:30955746..30959136-

>Vigun08g137400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g137400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g137400.1; organism=Vigna unguiculata; type=CDS; length=219bp; location=Sequence derived from: Vu08:30955746..30959136- (Vigna unguiculata
ATGGGGAAACAGATTGTGCCGGTGAAATCAGTGATCTACGCTCTCTCCCC
TTTCCAGCAGAAGATAATGACGGGTCTCTGGAAGGACTTGCCCACCAAGA
TTCATCACAAGGTCTCCGAGAATTGGATCAACGCCACTCTCTTGCTCGGT
CCCCTCGTCGGCACCTACGCGTATGTTCAGAACTACCTGGAAAAGGAGAA
GCTTCATCACAGGTACTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR020101Cyt_b-c1_8-plants
IPR036642Cyt_bc1_su8_sf
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO:0070469respirasome
Vocabulary: Molecular Function
TermDefinition
GO:0008121ubiquinol-cytochrome-c reductase activity