Vigun08g149900.1

Transcript Overview
NameVigun08g149900.1
Unique NameVigun08g149900.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length249
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:32242375..32242623 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL043Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuL332Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL196Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL205Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL059Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL732Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL704Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL135Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL140Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0208Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0217Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0821Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL548Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0155Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1075Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0195Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0428Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0636Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0857Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1203Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL484Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL486Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL703Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vrvvuL271Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL447Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL275Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL377Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL575Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR378Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR388Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR396Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL128Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL132Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL516Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL412Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL413Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL598Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL140Cicer arietinum
carvuL142Cicer arietinum
carvuL148Cicer arietinum
carvuL229Cicer arietinum
carvuL516Cicer arietinum
ccavuL061Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL423Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL550Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR676Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR682Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR683Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR673Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR731Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL287Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL378Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL380Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL301Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL398Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL400Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL057Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL618Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR437Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr01.1467Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014640161.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Cc_v2.0_12118.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014648688.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.008G191701.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cc_v2.0_00402.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
evm.model.Chr01.2060Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan03g257500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg33952.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigan.03G088500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.03G061600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
PvulFLAVERTChr08.1001481Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Ca_15295.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Cr_14317.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Cr_03808.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-KK1_033733Cajanus cajan Asha genome v1.0Cajanus cajan
Va07G014120.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_29462Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
XM_058927630.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_16109Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_027331654.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigst.04G264300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.04G363700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Phvul.001G233300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_029800Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_00623Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_18863Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_13312Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_04G02954.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-TanjilR_23853Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_21318Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun01g218500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun01g218500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun08g149900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g149900Vigun08g149900_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g149900.1Vigun08g149900.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g149900.1_Vu_IT97K-499-35_v1.1Vigun08g149900.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g149900.1.v1.1.CDS.1Vigun08g149900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
The following BLAST results are available for this feature:
BLAST of Vigun08g149900.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 57..75
e-value: 1.8E-12
score: 46.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g149900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g149900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g149900.1; organism=Vigna unguiculata; type=mRNA; length=249bp
ATGGCTTCTTCTGTATCCACCACACCCACTCTCTACTTCGACGACAAGTG
GAAGCTGTCCAAGAAAGAAGGATCCACCAGAAGCAGGTCCTCCACCACCA
CCCCTTTCATCAAGAATTCCTCCTCGCAGAGAAGGTGCGCGTTTGCGAGC
AAGTGTGCCAGGCTCGTCAAGGAGCAGAGGGCGCGCTTCTACATCATGAG
GCGCTGCGTCACAATGCTCATATGCTGGCGTGACTACAGCGATTCCTGA
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protein sequence of Vigun08g149900.1_Vu_IT97K-499-35_v1.1

>Vigun08g149900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g149900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g149900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=83bp
MASSVSTTPTLYFDDKWKLSKKEGSTRSRSSTTTPFIKNSSSQRRCAFAS
KCARLVKEQRARFYIMRRCVTMLICWRDYSDS*
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mRNA from alignment at Vu08:32242375..32242623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g149900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g149900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g149900.1; organism=Vigna unguiculata; type=mRNA; length=249bp; location=Sequence derived from: Vu08:32242375..32242623+ (Vigna unguiculata
ATGGCTTCTTCTGTATCCACCACACCCACTCTCTACTTCGACGACAAGTG
GAAGCTGTCCAAGAAAGAAGGATCCACCAGAAGCAGGTCCTCCACCACCA
CCCCTTTCATCAAGAATTCCTCCTCGCAGAGAAGGTGCGCGTTTGCGAGC
AAGTGTGCCAGGCTCGTCAAGGAGCAGAGGGCGCGCTTCTACATCATGAG
GCGCTGCGTCACAATGCTCATATGCTGGCGTGACTACAGCGATTCCTGA
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Coding sequence (CDS) from alignment at Vu08:32242375..32242623+

>Vigun08g149900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g149900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g149900.1; organism=Vigna unguiculata; type=CDS; length=249bp; location=Sequence derived from: Vu08:32242375..32242623+ (Vigna unguiculata
ATGGCTTCTTCTGTATCCACCACACCCACTCTCTACTTCGACGACAAGTG
GAAGCTGTCCAAGAAAGAAGGATCCACCAGAAGCAGGTCCTCCACCACCA
CCCCTTTCATCAAGAATTCCTCCTCGCAGAGAAGGTGCGCGTTTGCGAGC
AAGTGTGCCAGGCTCGTCAAGGAGCAGAGGGCGCGCTTCTACATCATGAG
GCGCTGCGTCACAATGCTCATATGCTGGCGTGACTACAGCGATTCCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL