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Transcript Overview
| Name | Vigun08g166000.1 |
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| Unique Name | Vigun08g166000.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1748 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g166000.1 | Vigun08g166000.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun08g166000.1_Vu_IT97K-499-35_v1.1 | Vigun08g166000.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g166000.1.v1.1.five_prime_UTR.1 | Vigun08g166000.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g166000.1.v1.1.CDS.1 | Vigun08g166000.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g166000.1.v1.1.CDS.2 | Vigun08g166000.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g166000.1.v1.1.three_prime_UTR.1 | Vigun08g166000.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g166000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g166000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g166000.1; organism=Vigna unguiculata; type=mRNA; length=1748bp
TCTGTTAAATACAGAACTTGACGAACACATGAAGCCCCACAAACCAACAC
CTAGCTAGGTTTCTGCCATGGCTTACTCCAGATTTCTTGATGTGTTTTCA
TGGATTCAAAACACTCCACCAATCACAGAATGGAAAACAGGTTCCATGTC
TATGAGCATATGTTCCACAAACTCATCTCAACCATCACTTAATCTTGTCA
TAGCAAAACACCACCACCAATCCTCAAGTCTCTCTTTAGCCATTGTAGCA
GATTTCAGCATCCCTATATCTCTTTGGACCTCTAAACCATTCAAACCTAA
CACCAAAACCATGAGGTTAACAGATGGTGAAACCATTTCAAATCTCCTTG
TTAATTTCATACAAGATGTCCTTAACTATGGCTCCAACAAGAAGAATGTT
TCCTACATCAAGTTTCCCAAACTTGATTATATTTCTAACATCCAAGACAT
TTTCAACCTTGCTTTCCTCACCCTCTTGTTCCTAGTTTGCATATACGAAG
CTCCTTCTGATCTTCGTTCTAGTTGTCTCAGCAGCTTGAAAGAACAACTT
GCGGGGTGTCGGTCAAGGCAAGCATCGAAGTTACTGATGAAACTCCTGGG
GTCCAACTTGGAAGAACAATGGATGCGTTCCGTGAACCTTGCCATCACAA
ATTGGATTGTGGAGCTCCAAGAAGCACATCACAATGGCCACATCACCCTC
AGAACTCCATCACCTCTATTTTCTTACGCGTTCTCAACAGCTGGGTTATG
GAAAGTTCAATTATACTGCCCCGTCATAAACATGGATGTTGTGAATGCAA
ACAACCATCCACCTGATGAGAGGCTTCAATTCTCTCTCAAATATCAACAA
CTTGAAGGTGTTTTCCAGTTCAATTACAAAGTCATAATCAAAGACAAATG
GGTCGAAATCATGGTGAACATCGACAACATAAGATGCGATGTTTTGAAAC
TGGTAGATGACAGTCTGATGAGAGAACGAGGAGCAGGTGCAGCTGAAAAA
CATTTTCCTTCAAGAATCTCGTTGCAACTTACTCCGACACTTCAACACCA
AGTGTTGAGCGTATCAGTTGGGAAATCCTCGGAGAATCCGGTGATAGAGT
TTGGAGTGGAGAAAGGAATAGAAGCATCGTTCGATCCACCGAACCCTTAC
ATGGGACTCAGCGTATCAGCGGGAGAATCGACAACTGTGAGCTTAAAGCC
ATGGAAATTCGAAGAATCTGTTTATGGGTACAGTGCAAATTTGAACTGGT
TTCTTCATGATAGCACTGATGGGAAAGAAGTGTTCTCGTCAAAACCTTCG
AAGGTTGCGATGTTTAACCCAAAGGCATGGTTCAGAGACAGGTACTCGAG
TGCTTATCGCCCTTTCACGAGGCAAGGAGGAGTTATTTTCGCGCGTGATG
AGTATGGAGAAAGTGTGTGTTGGAAAGTGGATAAAGGTGTTGTGGGGAAG
ACGATGGAGTGGGAGGTTAGGGGTTGGATATGGTTGACGTATTGGCCTAA
CAAGCACAAGACATTCTACCATGAAACCAAAAGATTCGAGTTTCGAGAAA
CACTGTACCTCAATATTTGAATTGTAATATTTTCAGTACTTAATTTGATA
AAATATGATACAAATAGAATTAAGCATGAATTTAGGTTCATTACTTTTTT
TTTTTTACTTTTCATatacacagattactactaaatttaacgttttaaaa
tatattaaaaatatatttaaaatattaacacactatacttttattatt back to topprotein sequence of Vigun08g166000.1_Vu_IT97K-499-35_v1.1 >Vigun08g166000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g166000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g166000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=501bp
MAYSRFLDVFSWIQNTPPITEWKTGSMSMSICSTNSSQPSLNLVIAKHHH
QSSSLSLAIVADFSIPISLWTSKPFKPNTKTMRLTDGETISNLLVNFIQD
VLNYGSNKKNVSYIKFPKLDYISNIQDIFNLAFLTLLFLVCIYEAPSDLR
SSCLSSLKEQLAGCRSRQASKLLMKLLGSNLEEQWMRSVNLAITNWIVEL
QEAHHNGHITLRTPSPLFSYAFSTAGLWKVQLYCPVINMDVVNANNHPPD
ERLQFSLKYQQLEGVFQFNYKVIIKDKWVEIMVNIDNIRCDVLKLVDDSL
MRERGAGAAEKHFPSRISLQLTPTLQHQVLSVSVGKSSENPVIEFGVEKG
IEASFDPPNPYMGLSVSAGESTTVSLKPWKFEESVYGYSANLNWFLHDST
DGKEVFSSKPSKVAMFNPKAWFRDRYSSAYRPFTRQGGVIFARDEYGESV
CWKVDKGVVGKTMEWEVRGWIWLTYWPNKHKTFYHETKRFEFRETLYLNI
* back to topmRNA from alignment at Vu08:33807714..33809542+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g166000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g166000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g166000.1; organism=Vigna unguiculata; type=mRNA; length=1829bp; location=Sequence derived from: Vu08:33807714..33809542+ (Vigna unguiculata
TCTGTTAAATACAGAACTTGACGAACACATGAAGCCCCACAAACCAACAC
CTAGCTAGGTTTCTGCCATGGCTTACTCCAGATTTCTTGATGTGTTTTCA
TGGATTCAAAACACTCCACCAATCACAGAATGGAAAACAGGTTCCATGTC
TATGAGCATATGTTCCACAAACTCATCTCAACCATCACTTAATCTTGTCA
TAGCAAAACACCACCACCAATCCTCAAGTCTCTCTTTAGCCATTGTAGCA
GATTTCAGCATCCCTATATCTCTTTGGACCTCTAAACCATTCAAACCTAA
CACCAAAACCATGAGGTTAACAGATGGTGAAACCATTTCAAATCTCCTTG
TTAATTTCATACAAGATGTCCTTAACTATGGCTCCAACAAGAAGAATGTT
TCCTACATCAAGTTTCCCAAACTTGATTATATTTCTAACATCCAAGACAT
TTTCAACCTTGCTTTCCTCACCCTCTTGTTCCTAGTTTGCATATACGAAG
CTCCTTCTGATCTTCGTTCTAGTTGTCTCAGCAGCTTGAAAGAACAACTT
GCGGGGTGTCGGTCAAGGCAAGCATCGAAGTTACTGATGAAACTCCTGGG
GTCCAACTTGGAAGAACAATGGATGCGTTCCGTGAACCTTGCCATCACAA
ATTGGATTGTGGAGCTCCAAGAAGCACATCACAATGGCCACATCACCCTC
AGAACTCCATCACCTCTATTTTCTTACGCGTTCTCAACAGCTGGGTTATG
GAAAGTTCAATTATACTGCCCCGTCATAAACATGGATGTTGTGAATGCAA
ACAACCATCCACCTGATGAGAGGCTTCAATTCTCTCTCAAATATCAACAA
CTTGAAGGTGTTTTCCAGTTCAATTACAAAGTCATAATCAAAGACAAATG
GGTCGAAATCATGGTGAACATCGACAACATAAGGTAATTAATTAAAACTA
ACCCTAATCCACCTGTTTATCAAGTTGAATAATCACTGAAATATTTACGT
TTTTCTGTGGAAAGATGCGATGTTTTGAAACTGGTAGATGACAGTCTGAT
GAGAGAACGAGGAGCAGGTGCAGCTGAAAAACATTTTCCTTCAAGAATCT
CGTTGCAACTTACTCCGACACTTCAACACCAAGTGTTGAGCGTATCAGTT
GGGAAATCCTCGGAGAATCCGGTGATAGAGTTTGGAGTGGAGAAAGGAAT
AGAAGCATCGTTCGATCCACCGAACCCTTACATGGGACTCAGCGTATCAG
CGGGAGAATCGACAACTGTGAGCTTAAAGCCATGGAAATTCGAAGAATCT
GTTTATGGGTACAGTGCAAATTTGAACTGGTTTCTTCATGATAGCACTGA
TGGGAAAGAAGTGTTCTCGTCAAAACCTTCGAAGGTTGCGATGTTTAACC
CAAAGGCATGGTTCAGAGACAGGTACTCGAGTGCTTATCGCCCTTTCACG
AGGCAAGGAGGAGTTATTTTCGCGCGTGATGAGTATGGAGAAAGTGTGTG
TTGGAAAGTGGATAAAGGTGTTGTGGGGAAGACGATGGAGTGGGAGGTTA
GGGGTTGGATATGGTTGACGTATTGGCCTAACAAGCACAAGACATTCTAC
CATGAAACCAAAAGATTCGAGTTTCGAGAAACACTGTACCTCAATATTTG
AATTGTAATATTTTCAGTACTTAATTTGATAAAATATGATACAAATAGAA
TTAAGCATGAATTTAGGTTCATTACTTTTTTTTTTTTACTTTTCATATAC
ACAGATTACTACTAAATTTAACGTTTTAAAATATATTAAAAATATATTTA
AAATATTAACACACTATACTTTTATTATT back to topCoding sequence (CDS) from alignment at Vu08:33807714..33809542+ >Vigun08g166000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g166000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g166000.1; organism=Vigna unguiculata; type=CDS; length=1503bp; location=Sequence derived from: Vu08:33807714..33809542+ (Vigna unguiculata
ATGGCTTACTCCAGATTTCTTGATGTGTTTTCATGGATTCAAAACACTCC
ACCAATCACAGAATGGAAAACAGGTTCCATGTCTATGAGCATATGTTCCA
CAAACTCATCTCAACCATCACTTAATCTTGTCATAGCAAAACACCACCAC
CAATCCTCAAGTCTCTCTTTAGCCATTGTAGCAGATTTCAGCATCCCTAT
ATCTCTTTGGACCTCTAAACCATTCAAACCTAACACCAAAACCATGAGGT
TAACAGATGGTGAAACCATTTCAAATCTCCTTGTTAATTTCATACAAGAT
GTCCTTAACTATGGCTCCAACAAGAAGAATGTTTCCTACATCAAGTTTCC
CAAACTTGATTATATTTCTAACATCCAAGACATTTTCAACCTTGCTTTCC
TCACCCTCTTGTTCCTAGTTTGCATATACGAAGCTCCTTCTGATCTTCGT
TCTAGTTGTCTCAGCAGCTTGAAAGAACAACTTGCGGGGTGTCGGTCAAG
GCAAGCATCGAAGTTACTGATGAAACTCCTGGGGTCCAACTTGGAAGAAC
AATGGATGCGTTCCGTGAACCTTGCCATCACAAATTGGATTGTGGAGCTC
CAAGAAGCACATCACAATGGCCACATCACCCTCAGAACTCCATCACCTCT
ATTTTCTTACGCGTTCTCAACAGCTGGGTTATGGAAAGTTCAATTATACT
GCCCCGTCATAAACATGGATGTTGTGAATGCAAACAACCATCCACCTGAT
GAGAGGCTTCAATTCTCTCTCAAATATCAACAACTTGAAGGTGTTTTCCA
GTTCAATTACAAAGTCATAATCAAAGACAAATGGGTCGAAATCATGGTGA
ACATCGACAACATAAGATGCGATGTTTTGAAACTGGTAGATGACAGTCTG
ATGAGAGAACGAGGAGCAGGTGCAGCTGAAAAACATTTTCCTTCAAGAAT
CTCGTTGCAACTTACTCCGACACTTCAACACCAAGTGTTGAGCGTATCAG
TTGGGAAATCCTCGGAGAATCCGGTGATAGAGTTTGGAGTGGAGAAAGGA
ATAGAAGCATCGTTCGATCCACCGAACCCTTACATGGGACTCAGCGTATC
AGCGGGAGAATCGACAACTGTGAGCTTAAAGCCATGGAAATTCGAAGAAT
CTGTTTATGGGTACAGTGCAAATTTGAACTGGTTTCTTCATGATAGCACT
GATGGGAAAGAAGTGTTCTCGTCAAAACCTTCGAAGGTTGCGATGTTTAA
CCCAAAGGCATGGTTCAGAGACAGGTACTCGAGTGCTTATCGCCCTTTCA
CGAGGCAAGGAGGAGTTATTTTCGCGCGTGATGAGTATGGAGAAAGTGTG
TGTTGGAAAGTGGATAAAGGTGTTGTGGGGAAGACGATGGAGTGGGAGGT
TAGGGGTTGGATATGGTTGACGTATTGGCCTAACAAGCACAAGACATTCT
ACCATGAAACCAAAAGATTCGAGTTTCGAGAAACACTGTACCTCAATATT
TGA back to top
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