Vigun08g189800.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun08g189800.1 vs. DB:Swiss
Match: TM56B_XENLA (Transmembrane protein 56-B OS=Xenopus laevis OX=8355 GN=tmem56-b PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.853e-20 Identity = 73/236 (30.93%), Postives = 117/236 (49.58%), Query Frame = 1
Query: 133 MFYDLTQLFSTVHFKSYSSLTRIQRVEWNNRSISTIHAIFVTTMSLYFVFCSNLYSDDQFSELVTFRSSSWSTFALGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAYSMLSGEGQL--YTYMVLISETTTPGINLRWYLDAAGMKK-SKAYIINGVVIFIAWMVARILLFVYMFYHVYLHFDQVEQMQSFG---QXXXXXXXXXXXXMNLVWFSKIIKGLKKTLAKRQ 822
+F+ + ST + L+ Q++EWN+R++S+ HA+ V LY L DD + + + V+ GY I+DL +I +++ +G +V HHL +L A Y + GEG L + LI+E +TP +N RW+ + G K S ++NGV++ I++ + RI + + V+ F E G Q II + L IMN++W KI KG K L R
Sbjct: 22 LFHVGSSWLSTRLTGGFHKLSARQKIEWNSRTVSSFHALVVGCFCLYI-----LVYDDAVNADPVWGDPFMVKLNVAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVL--GEGMLPYFGNFRLIAEFSTPFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIVRIAVIPIYYGRVFSTFG-TEAFHRLGLGAQCAWIISSVSLDIMNVMWMIKIAKGCYKVLYHRD 249
BLAST of Vigun08g189800.1 vs. DB:Swiss
Match: TMM56_MOUSE (Transmembrane protein 56 OS=Mus musculus OX=10090 GN=Tmem56 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.408e-19 Identity = 63/231 (27.27%), Postives = 119/231 (51.52%), Query Frame = 1
Query: 133 MFYDLTQLFSTVHFKSYSSLTRIQRVEWNNRSISTIHAIFVTTMSLYFVFCSNLYSDDQFSELVTFRSSSWSTFALGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAYSMLSGEGQLYTYMVLISETTTPGINLRWYLDAAGMKK-SKAYIINGVVIFIAWMVARILLFVYMFYHVYLHFDQVEQMQSFG---QXXXXXXXXXXXXMNLVWFSKIIKGLKKTLA 813
+F+ ++ FS Y+SL+ +++EWN+R +ST H++ V LY F D + ++ + + GY I+DL +I + + +G ++IHH L A + + +G L++E ++P +N RW+ +A K SKA +ING+++ + + + RI+ M++ +Y + E FG Q + I+ ++L +MN++W KI KG K ++
Sbjct: 35 LFHFVSYWFSARVSSGYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLFFFDEATITDPL-----WGDPTYVNINIATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAELSSPFVNQRWFFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLYSVYGT-EPYIRFGFVIQSVWIVTCVILDVMNIMWMIKITKGCIKVIS 259
BLAST of Vigun08g189800.1 vs. DB:Swiss
Match: TMM56_HUMAN (Transmembrane protein 56 OS=Homo sapiens OX=9606 GN=TMEM56 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.128e-17 Identity = 66/235 (28.09%), Postives = 123/235 (52.34%), Query Frame = 1
Query: 133 MFYDLTQLFSTVHFKSYSSLTRIQRVEWNNRSISTIHAIFVTTMSLY-FVFCSNLYSDDQFSELVTFRSSSWSTFALGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAYSMLSGEGQLYTYMVLISETTTPGINLRWYLDAAGMKK-SKAYIINGVVIFIAWMVARI--LLFVYMFYHVYLHFDQVEQMQSFGQXXXXXXXXXXXXMNLVWFSKIIKGLKKTLAK-RQ 822
+FY ++ FS ++SL+ +++EWN+R +ST H++ V LY F+F D+ + S + + ++ GY I+DL +I ++ +G +++HH SL A + +G L++E ++P +N RW+ +A K SKA +ING+++ + + + RI +L Y F + + ++ Q+ +I +VL +MN++W KI KG K ++ RQ
Sbjct: 22 LFYFVSYWFSAKVSPGFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLF------DEATKADPLWGGPSLANVNIAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELSSPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRIASMLPHYGFMYSVYGTEPYIRLGVLIQLSWVISCVVLDVMNVMWMIKISKGCIKVISHIRQ 250
BLAST of Vigun08g189800.1 vs. DB:Swiss
Match: TM56B_DANRE (Transmembrane protein 56-B OS=Danio rerio OX=7955 GN=tmem56b PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 7.212e-17 Identity = 59/231 (25.54%), Postives = 113/231 (48.92%), Query Frame = 1
Query: 136 FYDLTQLFSTVHFKSYSSLTRIQRVEWNNRSISTIHAIFVTTMSLYFVFCSNLYSDDQFSELVTFRSSSWSTFALGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAYSMLSGEGQLYTYMVLISETTTPGINLRWYLDAAGMKKSKAYII-NGVVIFIAWMVARILLFVYMFYHVY--LHFDQVEQMQSFGQXXXXXXXXXXXXMNLVWFSKIIKGLKKTLAKR 819
F ++ + S+ + Y L + +WN+R +ST+HA+ V LY L+ DD +E + + + ++ GY DL ++ + ++G +V HHL +L A Y + G + LISE +TP +N RW+ +A ++ ++ NG+ + + + + RI + + V+ ++ E++ QV II + L I+N++W KI +G K + +
Sbjct: 20 FSCVSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHALIVGLFCLYI-----LWYDDAVNEDPVWGDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPYFANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPPYWAKVFGIIYSPTFEKLGLAIQVAWIISCVCLDILNIIWMYKIARGCYKVITGK 245
BLAST of Vigun08g189800.1 vs. DB:Swiss
Match: TM56A_XENLA (Transmembrane protein 56-A OS=Xenopus laevis OX=8355 GN=tmem56-a PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.783e-15 Identity = 65/254 (25.59%), Postives = 116/254 (45.67%), Query Frame = 1
Query: 76 LADPLIPYTSIIGGIFACKMFYD-LTQLFSTVHFKSYSSLTRIQRVEWNNRSISTIHAIFVTTMSLYFVFCSNLYSDDQFSELVTFRSSSWSTFALGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAYSMLSGEGQLYTYMVLISETTTPGINLRWYLDAAGMKKSK-AYIINGVVIFIAWMVARILLFVYMFYHVYLHFDQVEQMQSFG---QXXXXXXXXXXXXMNLVWFSKIIKGLKKTLAKRQ 822
+ D LI Y + G ++ + ++ T + +Y L+ ++ EW++R +ST HA+ V + LY L DD + + W + ++ GY + DL ++ F+ + V HHL + Y + G + LISE +TP +N RW+ D G +S ++NG+ + + + + RI + + V+ F E G QV I+ +VL I+N+ W KI +G K + +
Sbjct: 1 MDDVLISYCVVTGSFLGFQLLFSAISPRLFTKYSSTYRQLSFGKQCEWDSRFVSTNHALIVGSACLYI-----LAYDDAVNADPIWGDPFWVKMNVAITCGYLVQDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNGLAMALVFFIVRIAVIPSYYSQVFATFG-TEGYIRLGIGPQVAWIVSCVVLDILNVFWMYKIARGFYKVVKAKP 248
BLAST of Vigun08g189800.1 vs. DB:Swiss
Match: TMM56_XENTR (Transmembrane protein 56 OS=Xenopus tropicalis OX=8364 GN=tmem56 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 4.179e-14 Identity = 62/249 (24.90%), Postives = 112/249 (44.98%), Query Frame = 1
Query: 91 IPYTSIIGGIFACKMFYDLTQLFSTVHFKS-YSSLTRIQRVEWNNRSISTIHAIFVTTMSLYFVFCSNLYSDDQFSELVTFRSSSWSTFALGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAYSMLSGEGQLYTYMVLISETTTPGINLRWYLDAAGMKKSK-AYIINGVVIFIAWMVARILLFVYMFYHVYLHFDQVEQMQSFG---QXXXXXXXXXXXXMNLVWFSKIIKGLKKTLAKRQ 822
I Y + G ++ + + + + S Y L+ ++ EW++R +ST HA+ V + LY L D+ + + W + ++ GY + DL ++ F+ + V HHL + Y + G + LISE +TP +N RW+ D G +S ++NG+ + + + + RI + + V+ F E G QV I+ +VL I+N+ W KI +G K + +
Sbjct: 7 ISYCVVTGSFLGFQLLFSIISPRTFTKYSSTYRQLSFGKQCEWDSRCVSTTHALVVGSGCLYI-----LAYDEAVNADPIWGDPFWVKMNVAITCGYLVHDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNGLAMALVFFIVRIAVIPSYYSQVFATFG-TEGYIRLGIGPQVAWIVSCVVLDILNVFWMYKIARGFYKVVKAKP 249
BLAST of Vigun08g189800.1 vs. DB:Swiss
Match: TM56B_DICDI (Transmembrane protein 56 homolog B OS=Dictyostelium discoideum OX=44689 GN=tmem56b PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.638e-12 Identity = 48/152 (31.58%), Postives = 87/152 (57.24%), Query Frame = 1
Query: 202 QRVEWNNRSISTIHAIFVTTMSLYFVFCSNLYSDDQFSELVTFRSSS-WSTFALGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAYSMLSGEGQLYTYMV--LISETTTPGINLRWYLDAAGMKKSKAYIINGVVIFIAWMVARI 648
+R+EW NR IST++AI + +S+Y C LY ++ + RS+S S F YFI D + ++ L + ++HH ++L++ ++ L G+G + ++ +E TTP INLR++L +K Y+ING++IF+ +++ R+
Sbjct: 45 KRIEWPNRIISTVNAIVTSALSIY---C--LYYNEWIVN--SLRSTSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHHTIALLS--FTFLGGKGLAHHLLLSYTFTEITTPLINLRFFLLDLNLKNHPLYVINGLLIFVGFVLFRV 187
BLAST of Vigun08g189800.1 vs. DB:Swiss
Match: TM56C_DICDI (Transmembrane protein 56 homolog C OS=Dictyostelium discoideum OX=44689 GN=tmem56c PE=3 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 5.259e-8 Identity = 51/184 (27.72%), Postives = 95/184 (51.63%), Query Frame = 1
Query: 175 KSYSSLTRIQRVEWNNRSISTIHAIFVTTMSLYFVFCSNLYSDDQFSELVTFRSSSWSTFALGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAYSMLSGEGQLYTYMV---LISETTTPGINLRWYLDAAGMKKSKAYIINGVVIFIAWMVARILLFVYMFYHVYLHFDQVEQMQSF 717
K+Y++LT +++EW+ R +S IHA V L F S + S ++ ++ F++ S L +S GYFI DL +I + P L G +IH ++ L + Y L + +V LI+E +T +N++ ++ KSK Y + I ++V+R + + + + +YL + +++ F
Sbjct: 53 KAYTTLTEKKKLEWDQRVVSMIHAFLV----LPFCIISAVES-FKYGDIFYFQNDSL-LMVLSISSGYFIWDL-IICYKDPKLVGTPMIIHAIMGLSSNIYVALPHGRPCFVPIVAILLITEISTIPLNMKGFIQVVN-SKSKYYNWSLGAFVITFLVSRCI--IGLPFDIYLVYGCIQRWDVF 226
BLAST of Vigun08g189800.1 vs. DB:Swiss
Match: TM56A_DICDI (Transmembrane protein 56 homolog A OS=Dictyostelium discoideum OX=44689 GN=tmem56a PE=3 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 5.428e-7 Identity = 48/228 (21.05%), Postives = 105/228 (46.05%), Query Frame = 1
Query: 145 LTQLFSTVHFKSYSSLTRIQRVEWNNRSISTIHAIFVTTMSLYFVFCSNLYSDDQFSELVTFRSSSWSTFALGVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLS--LVAVAYSMLSGEGQLYTYMVLISETTTPGINLRWYLDAAGMKKSKAYIINGVVIFIAWMVARILLFVYMFYHVYLHFDQVEQMQSFGQXXXXXXXXXXXXMNLVWFSKIIKGLKKTLAKRQ 822
+ L T+ + L+ ++EW N+ ++TI +I ++S Y ++ + ++ + + + S F L YF+ D + ++ L + +IHHL+ L V + + L L+ E T P I+++W+L ++ Y ING ++ ++ R + +Y+ + ++ S ++ +++I+NL W +IKG+ K L++ +
Sbjct: 28 IPSLLQTIFNNNEKQLSYSSKIEWTNKIVATISSIVSFSLSCYCIYNKKSWVTNEMTS-----TCALSDFILKFISFYFLFDALHLIIYYKQLFDWPIIIHHLVVGILSYVYIGLYYKKVHLTLLYFLLFEITNPFIHMKWFLKDLKLENHILYSINGFMMAFFFIFIRDIYVPIKVVKIYI--NGYTELNSIANTIIFFCFPIITILNLFWTYLVIKGILKHLSRTK 248 The following BLAST results are available for this feature:
BLAST of Vigun08g189800.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 9
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g189800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g189800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g189800.1; organism=Vigna unguiculata; type=mRNA; length=1466bpback to top protein sequence of Vigun08g189800.1_Vu_IT97K-499-35_v1.1 >Vigun08g189800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g189800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g189800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=275bpback to top mRNA from alignment at Vu08:35770686..35775760- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun08g189800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g189800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g189800.1; organism=Vigna unguiculata; type=mRNA; length=5075bp; location=Sequence derived from: Vu08:35770686..35775760- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu08:35770686..35775760- >Vigun08g189800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g189800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g189800.1; organism=Vigna unguiculata; type=CDS; length=825bp; location=Sequence derived from: Vu08:35770686..35775760- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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