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Transcript Overview
Name | Vigun08g190200.1 |
Unique Name | Vigun08g190200.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 1841 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g190200.1 | Vigun08g190200.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun08g190200.1_Vu_IT97K-499-35_v1.1 | Vigun08g190200.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g190200.1.v1.1.five_prime_UTR.1 | Vigun08g190200.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g190200.1.v1.1.CDS.1 | Vigun08g190200.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun08g190200.1.v1.1.CDS.2 | Vigun08g190200.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun08g190200.1.v1.1.CDS.3 | Vigun08g190200.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun08g190200.1.v1.1.CDS.4 | Vigun08g190200.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun08g190200.1.v1.1.CDS.5 | Vigun08g190200.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun08g190200.1.v1.1.CDS.6 | Vigun08g190200.1.v1.1.CDS.6_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun08g190200.1.v1.1.CDS.7 | Vigun08g190200.1.v1.1.CDS.7_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g190200.1.v1.1.three_prime_UTR.1 | Vigun08g190200.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
BLAST of Vigun08g190200.1 vs. DB:Swiss
Match: JASON_ARATH (Protein JASON OS=Arabidopsis thaliana OX=3702 GN=JASON PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 2.313e-51 Identity = 161/463 (34.77%), Postives = 218/463 (47.08%), Query Frame = 1
Query: 55 KVMGCFFACFRIRDTPRTHTPQLISTTNRSNGVVISRNNSTSLLTEEERD-------------DSVRIDGVGFQGELQGLKDEAKFLKACGTIAGTPIEIRKASEKLKTXXXXXXXXXXXRFRSWLPNTSLEKLKPDVQPFDPPTPIKLCREWGNSMDSSEHTSNSCISKAQD---TQNDSVDYIEKSCAGNPHREDSSERNAALVSPLLPSNTQRKNKSVRFERETDLASYGSSSNDWHMKENKSPNNRSANKQSPYPTPLKLFDEMQTPGTVYPTSLEELRTGKARVRSQFVYPTNNSGDNVFRCNIL----EAGDFSPK---------------EDSSD--LS----------NLVDQSQNGTPTPEQGLKKISNG------------YDNEEKSILSSVNHWYGNGIPNSTTKYKEDQKVKWHATPFEERLDKALSE----NFISKRKL-VRGKPVEFD 1251
+ M CF CFR RD T S+ S S+N+ ++L EE+ DS+ ID +GL+DEA+FLKACGTI TPIEIRKAS+KL S S + L + TP+K C E G +SE T++SC+ +D + S D E G + + +R A P+ T KNKSVRFE + D ++ +SS + ++ + SP PTPLKL DEMQTPGT+YP ++E G+ R+RSQFV+ +N +N + E D+ + E+SSD LS N ++++ G+ I+ G +NE+ I S W GNGIPNSTTKYKEDQKV WHATPFE RL+KALSE + +RKL V + VE D
Sbjct: 27 RAMACFLDCFRARDNRSTSNLVSHSSLANSRKAQDSQNDLSALFLSEEKSASSPCLDKERFDLDSIHID--------KGLRDEARFLKACGTIPETPIEIRKASQKLSPQHSGSSHFHSWISSSSSMGSRLA---------ESSTPMKACEEVGRPSFTSEQTASSCVIDVRDNARISSASSDGTEVESVGTAIKGEL-DRTAR------PTFTAGKNKSVRFECDLDQSNSSNSSENGSSRKPEMGGKICFTVSSPNPTPLKLSDEMQTPGTIYPANMESGGRGRPRIRSQFVHSVSNIMENASLYKVYKDSHEGLDYEEQIEAETPSSETYGEKVEESSDEKLSKFEASFSPWLNQINENIAALNERTPGVGVITPGDRPIIGLVAAQWIENEQTEI--SPKMWDGNGIPNSTTKYKEDQKVSWHATPFEVRLEKALSEEGGQSLFPQRKLEVMMEEVEGD 463
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 189..268 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 318..348 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 231..260 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 107..173 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 118..132 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 321..346 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g190200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g190200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g190200.1; organism=Vigna unguiculata; type=mRNA; length=1841bp ttaattaattaaATTTCCCTCGCTTGTGAGGCACTTCAAAATTCAAATTC GAGACCTGCGCAAGCGCTCACAGTTCACGCCCTTTCTCACACTCCGTTTC GATTTTGAACTGAATTCGAAGTTAGGGTTTCTGAATTTCCATGACATGCT GAGGAGCGTATTCTGGTTCATGATCCGTTTCTTCTTCCGATCCTTCACCA AAGTAATGGGTTGCTTCTTCGCCTGCTTCCGGATCAGAGACACTCCCCGT ACGCACACACCACAATTGATTTCAACCACCAATCGTTCCAACGGTGTTGT GATATCTCGGAATAACTCGACTTCTTTATTAACTGAAGAAGAGAGAGATG ATTCTGTTCGGATCGATGGGGTGGGGTTTCAGGGAGAATTGCAGGGGCTT AAGGACGAGGCTAAGTTTCTTAAAGCTTGTGGAACCATAGCAGGAACACC TATTGAAATTCGTAAAGCATCTGAGAAATTGAAAACATCACCATCTCCTG ATCAAGATTCTGACCCCTCAAGATTTCGTTCTTGGCTTCCCAACACGTCT TTGGAGAAACTGAAGCCAGATGTCCAACCATTTGATCCACCAACTCCCAT AAAACTTTGCCGTGAGTGGGGAAATAGCATGGATTCATCTGAGCACACAT CAAACAGTTGCATCTCCAAAGCACAAGATACTCAAAATGACTCTGTTGAC TATATAGAAAAAAGTTGTGCAGGGAACCCTCATAGGGAAGATAGTTCTGA AAGGAATGCAGCTTTAGTTTCACCTCTGCTACCCTCAAATACTCAGAGAA AGAACAAGTCTGTTCGTTTTGAAAGAGAAACTGACTTGGCATCCTATGGA AGCTCATCAAACGATTGGCATATGAAAGAAAACAAATCACCGAACAATCG AAGTGCAAATAAACAATCTCCTTATCCTACCCCGTTGAAGTTATTCGATG AGATGCAAACACCAGGAACTGTGTATCCTACATCATTAGAAGAGTTACGT ACTGGTAAGGCTCGGGTTCGGTCCCAGTTTGTCTATCCAACTAACAATTC AGGTGATAATGTCTTCCGATGCAACATACTAGAGGCTGGGGATTTTAGTC CCAAAGAAGATTCAAGTGATCTGAGTAATTTGGTTGACCAATCTCAAAAT GGAACTCCTACCCCAGAACAAGGGTTGAAGAAAATTTCAAATGGATATGA CAATGAGGAGAAATCAATTTTGTCCTCTGTCAATCATTGGTATGGCAATG GCATCCCGAATTCAACAACTAAGTACAAGGAGGACCAGAAAGTAAAATGG CACGCAACCCCGTTTGAAGAGAGGCTGGATAAGGCACTGTCTGAGAATTT TATATCTAAAAGGAAGCTTGTACGTGGGAAACCGGTGGAATTTGATGACA TTGAAGAAAATGATAGTGCATCGTCTCAGCAGCTATAGCCAAAAATGATG TTTTATGTGGTGTCATTTTGGTAACTGTAAATGTCCATCTCATCTCATTG TAGTCTCTTCTTATGCGGGAAGTAATTCAATATTCTGGAAACTAATTACT AATAAGCATCATTCAGTATGTTTATTATAAAAATTTTGCATTACCGTATC TCAGTCTGCGACAATAGTCTCATTCCCCCATATATTTTTAAAACATAAGT TGAAAGATCGAAAGAGCAATTGTCAAGTCTTTGAGCAGCCATCCTATTTT TGCCCTTTCTAATTTCTTTCACAAATCGTGGTGGTGCATCAGTCATCACC TAATTTCAGATTGAGTTACTAGTTTTTTTTTTTTTTGGACTAACATTTCA ACTACAAAGACTATTGTAGTTTTTAGCACTTTATATTTATG back to topprotein sequence of Vigun08g190200.1_Vu_IT97K-499-35_v1.1 >Vigun08g190200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g190200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g190200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=431bp MLRSVFWFMIRFFFRSFTKVMGCFFACFRIRDTPRTHTPQLISTTNRSNG VVISRNNSTSLLTEEERDDSVRIDGVGFQGELQGLKDEAKFLKACGTIAG TPIEIRKASEKLKTSPSPDQDSDPSRFRSWLPNTSLEKLKPDVQPFDPPT PIKLCREWGNSMDSSEHTSNSCISKAQDTQNDSVDYIEKSCAGNPHREDS SERNAALVSPLLPSNTQRKNKSVRFERETDLASYGSSSNDWHMKENKSPN NRSANKQSPYPTPLKLFDEMQTPGTVYPTSLEELRTGKARVRSQFVYPTN NSGDNVFRCNILEAGDFSPKEDSSDLSNLVDQSQNGTPTPEQGLKKISNG YDNEEKSILSSVNHWYGNGIPNSTTKYKEDQKVKWHATPFEERLDKALSE NFISKRKLVRGKPVEFDDIEENDSASSQQL* back to topmRNA from alignment at Vu08:35800757..35804245+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g190200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g190200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g190200.1; organism=Vigna unguiculata; type=mRNA; length=3489bp; location=Sequence derived from: Vu08:35800757..35804245+ (Vigna unguiculata TTAATTAATTAAATTTCCCTCGCTTGTGAGGCACTTCAAAATTCAAATTC
GAGACCTGCGCAAGCGCTCACAGTTCACGCCCTTTCTCACACTCCGTTTC
GATTTTGAACTGAATTCGAAGTTAGGGTTTCTGAATTTCCATGACATGCT
GAGGAGCGTATTCTGGTTCATGATCCGTTTCTTCTTCCGATCCTTCACCA
AAGTAATGGGTTGCTTCTTCGCCTGCTTCCGGATCAGAGACACTCCCCGT
ACGCACACACCACAATTGATTTCAACCACCAATCGTTCCAACGTAAAATT
TCACATTTCGCATTTGTCTTTCTTCTTTTCACGTATTATTTTAATTACTT
TTTGTTTGTGTGCTTGTAATACTTAGAATTCTTCTGTCTGTGCACCAGGG
TGTTGTGATATCTCGGAATAACTCGACTTCTTTATTAACTGAAGGTGTTT
TTCGTTTCTTTCTTTCTGCTTTTACGTTTTCTTTTTTGTCTTTTATTGTT
CTCACTGATTCTGTGCTCTAACTTTTTAGAAGAGAGAGATGATTCTGTTC
GGATCGATGGGGTGGGGTTTCAGGGAGAATTGCAGGGGCTTAAGGACGAG
GTATTTTCGTTGTGTTATTAATATTGTTATTGGTATTTCACTATTACTGC
AGCTGAAATTGTTTTCGTAATGATTTTTGTCAGGTTGTGTTTGATTGTTA
CAATTTTTGTTTGAACAAGTTATGGCATCGAGTAAAATAAGATTCATATT
TTATCTTGTGAATTCGCTTCAAGCTGGGTGAAATGAATCAGCAAACTGTG
ACATGGTTTAGGTTTTTGAGTTGTTCTGGCGCAGATGTGAAATGTAAATT
TTAAGAACCATCTTGAATGTAGTATACAAACAAAATGTGAAGAACAGGTG
ATTTAATGAACCTGTTTTGTAAAAGGGCTGGAAACAATTGGAAAAGAAGC
ACTGTTTGGACCATTAGTTTTTATTCAATTTGGCTTGTTAAAAGTTAGTC
ATCCATCACCCTTTCTATCATCTGCTGTGTATTTATGTTATACATTTTTT
GTACCTAATCCCTAAACTGTATATGGGAACCATGGGGTATATCAAACTTC
AAATACTTCCAATTCTCTTTTACAACTTGTTTATTATTTTGTTCTTCTTA
CATTTCTGCTTTTGTCAATTGAATTTTGATTGTCTCATTACTTAAACTCT
TTCTACAGGCTAAGTTTCTTAAAGCTTGTGGAACCATAGCAGGAACACCT
ATTGAAATTCGTAAAGCATCTGAGAAATTGAAAACATCACCATCTCCTGA
TCAAGATTCTGACCCCTCAAGATTTCGTTCTTGGCTTCCCAACACGTCTT
TGGAGAAACTGAAGCCAGATGTCCAACCATTTGATCCACCAACTCCCATA
AAACTTTGCCGTGAGTGGGGAAATAGCATGGATTCATCTGAGCACACATC
AAACAGGTTATTGGTGACTTTGGATTTTTTTTGTTAATACTGATATTGAA
TAATAATGAATTTGAAAGTGATACTTGAGTCAATTTGCATAGAAGGTGAA
GCTTTGTACTCAATTTTTATTGTAATCAGCTTTATATACATTCTTAACTG
TTCGAGCTCTTGATAGAGAAACTGCATTAGTAACTAATAAAAAATCAGGC
AGTCTGTTGTGTTTTTATGAGAAATGTCCTTCAAATGGTTCCTTCACTCT
TCCTTTTATATTTTGGATTTTAAATAATTAATAATTGTCGGGATGTTTTG
GTTGGAACTTGGAATTTTGTCCACTGACAATTACACAGGAGGGAGAACTA
GAACCTGATCATATGTTAGTTTCATTTCTCTTGCAGTTGCATCTCCAAAG
CACAAGATACTCAAAATGACTCTGTTGACTATATAGAAAAAAGTTGTGCA
GGGAACCCTCATAGGGAAGATAGTTCTGAAAGGAATGCAGCTTTAGTTTC
ACCTCTGCTACCCTCAAATACTCAGAGAAAGAACAAGTCTGTTCGTTTTG
AAAGAGAAACTGACTTGGCATCCTATGGAAGCTCATCAAACGATTGGCAT
ATGAAAGAAAACAAATCACCGAACAATCGAAGTGCAAATAAACAATCTCC
TTATCCTACCCCGTTGAAGTTATTCGATGAGATGCAAACACCAGGAACTG
TGTATCCTACATCATTAGAAGAGTTACGTACTGGTAAGGCTCGGGTTCGG
TCCCAGTTTGTCTATCCAACTAACAATTCAGGTGATAATGTCTTCCGATG
CAACATACTAGAGGCTGGGGATTTTAGTCCCAAAGAAGATTCAAGTGATC
TGAGTAATTTGGTTGACCAATCTCAAAATGGAACTCCTACCCCAGAACAA
GGGTTGAAGAAAATTTCAAATGGATATGACAATGAGGAGAAATCAATTTT
GTCCTCTGTCAATCATTGGTATGGCAATGGCATCCCGAATTCAACAACTA
AGTACAAGGAGGTATGTCTTGCAATCATTATTTGGTTTTTAGATCTGTAT
ATCCATCTAATGCTCTTTGACTGATTGTCCACAGGACCAGAAAGTAAAAT
GGCACGCAACCCCGTTTGAAGAGAGGCTGGATAAGGCACTGTCTGAGAAT
TTTATATCTAAAAGGTATATCAACTTAACAATTGATTGTATTCTGTTTAC
CTGTTAACAAGGATTAAAGGACCAAAAGAAGGGAAAATCTTTGAACTCAT
AAAATTTCTGTGAACCGCATGACAAGAGTCACAATTTCATTAAGGGCATG
TTAGGTGGAATCCTTAGTAATGGTTTATTTTTGTTGACCATCGAAATTCC
ACTCGAGTTTAACACATTTCTAATGGTTGAAGGATGTTTGGGCATGCCTT
GTTGCCACTAATCCACTGTGTTTTAATCAATTATTTGTTCCATTTTGATT
GGGAATTTGCTGTTTTTATTTTGAAATAGCAGTATTATGTTATCTTTTAC
TCGTTAATTCTTTAAATACGTATTTGTAAATGTCCTTCTAATTTGTTATT
TGATTTACAGGAAGCTTGTACGTGGGAAACCGGTGGAATTTGATGACATT
GAAGAAAATGATAGTGCATCGTCTCAGCAGCTATAGCCAAAAATGATGTT
TTATGTGGTGTCATTTTGGTAACTGTAAATGTCCATCTCATCTCATTGTA
GTCTCTTCTTATGCGGGAAGTAATTCAATATTCTGGAAACTAATTACTAA
TAAGCATCATTCAGTATGTTTATTATAAAAATTTTGCATTACCGTATCTC
AGTCTGCGACAATAGTCTCATTCCCCCATATATTTTTAAAACATAAGTTG
AAAGATCGAAAGAGCAATTGTCAAGTCTTTGAGCAGCCATCCTATTTTTG
CCCTTTCTAATTTCTTTCACAAATCGTGGTGGTGCATCAGTCATCACCTA
ATTTCAGATTGAGTTACTAGTTTTTTTTTTTTTTGGACTAACATTTCAAC
TACAAAGACTATTGTAGTTTTTAGCACTTTATATTTATG back to topCoding sequence (CDS) from alignment at Vu08:35800757..35804245+ >Vigun08g190200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g190200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g190200.1; organism=Vigna unguiculata; type=CDS; length=1293bp; location=Sequence derived from: Vu08:35800757..35804245+ (Vigna unguiculata ATGCTGAGGAGCGTATTCTGGTTCATGATCCGTTTCTTCTTCCGATCCTT CACCAAAGTAATGGGTTGCTTCTTCGCCTGCTTCCGGATCAGAGACACTC CCCGTACGCACACACCACAATTGATTTCAACCACCAATCGTTCCAACGGT GTTGTGATATCTCGGAATAACTCGACTTCTTTATTAACTGAAGAAGAGAG AGATGATTCTGTTCGGATCGATGGGGTGGGGTTTCAGGGAGAATTGCAGG GGCTTAAGGACGAGGCTAAGTTTCTTAAAGCTTGTGGAACCATAGCAGGA ACACCTATTGAAATTCGTAAAGCATCTGAGAAATTGAAAACATCACCATC TCCTGATCAAGATTCTGACCCCTCAAGATTTCGTTCTTGGCTTCCCAACA CGTCTTTGGAGAAACTGAAGCCAGATGTCCAACCATTTGATCCACCAACT CCCATAAAACTTTGCCGTGAGTGGGGAAATAGCATGGATTCATCTGAGCA CACATCAAACAGTTGCATCTCCAAAGCACAAGATACTCAAAATGACTCTG TTGACTATATAGAAAAAAGTTGTGCAGGGAACCCTCATAGGGAAGATAGT TCTGAAAGGAATGCAGCTTTAGTTTCACCTCTGCTACCCTCAAATACTCA GAGAAAGAACAAGTCTGTTCGTTTTGAAAGAGAAACTGACTTGGCATCCT ATGGAAGCTCATCAAACGATTGGCATATGAAAGAAAACAAATCACCGAAC AATCGAAGTGCAAATAAACAATCTCCTTATCCTACCCCGTTGAAGTTATT CGATGAGATGCAAACACCAGGAACTGTGTATCCTACATCATTAGAAGAGT TACGTACTGGTAAGGCTCGGGTTCGGTCCCAGTTTGTCTATCCAACTAAC AATTCAGGTGATAATGTCTTCCGATGCAACATACTAGAGGCTGGGGATTT TAGTCCCAAAGAAGATTCAAGTGATCTGAGTAATTTGGTTGACCAATCTC AAAATGGAACTCCTACCCCAGAACAAGGGTTGAAGAAAATTTCAAATGGA TATGACAATGAGGAGAAATCAATTTTGTCCTCTGTCAATCATTGGTATGG CAATGGCATCCCGAATTCAACAACTAAGTACAAGGAGGACCAGAAAGTAA AATGGCACGCAACCCCGTTTGAAGAGAGGCTGGATAAGGCACTGTCTGAG AATTTTATATCTAAAAGGAAGCTTGTACGTGGGAAACCGGTGGAATTTGA TGACATTGAAGAAAATGATAGTGCATCGTCTCAGCAGCTATAG back to top
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