Vigun09g137900.1

Transcript Overview
NameVigun09g137900.1
Unique NameVigun09g137900.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length929
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu09supercontigVu09:29965710..29966638 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL370Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL493Pisum sativum Cameor genome v1aPisum sativum
crvuL218Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL555Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL714Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL805Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuL0633Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL443Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0793Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0204Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0369Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0645Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0763Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1212Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL554Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL718Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR638Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR673Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL108Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL100Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL333Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL309Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL467Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL407Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL599Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR457Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR463Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL411Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL478Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL615Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL151Cicer arietinum
carvuL419Cicer arietinum
ccavuL347Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL442Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR732Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR750Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR770Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR771Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR853Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL302Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL265Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL317Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vuvunR519Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Cr_03948.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Cc_v2.0_05412.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat5g070680.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.2g138080.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Va04G046190.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg54218.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_14053.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-TanjilR_32204Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigst.02G125800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-TanjilR_00484Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cc_v2.0_11830.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Tiffany.R1.2g110840.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_004503000.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_10757Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_12827Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.1g221800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
XM_058925420.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.model.Chr09.2283Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.009G039700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_12975.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat02G0193700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058888673.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_Contig4G00008.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-KK1_005372Cajanus cajan Asha genome v1.0Cajanus cajan
Psat05G0221500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
LR48_mrnaVigan04g116600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Tiffany.R1.1g175920.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigan.02G171500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun09g137900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun09g137900Vigun09g137900_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g137900.1Vigun09g137900.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun09g137900.1_Vu_IT97K-499-35_v1.1Vigun09g137900.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g137900.1.v1.1.five_prime_UTR.1Vigun09g137900.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g137900.1.v1.1.CDS.1Vigun09g137900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g137900.1.v1.1.three_prime_UTR.1Vigun09g137900.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun09g137900.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.60.30coord: 56..100
e-value: 3.1E-5
score: 25.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun09g137900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g137900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g137900.1; organism=Vigna unguiculata; type=mRNA; length=929bp
TGTTAGCACCTGAAGTTGCATAGAACAGATAGAGAAACAGCAAAATCAAT
GACGAAGATTGAGATGAAATAAATAGTGAAAGAAAGGTGCAGAGTAATTC
GTGTAGTTCAACCACCACTCTCACCCCTCAATTTTCTTAACCTATATTAA
AAACTCGATCCAACTTTTTCTCCATCGTAACTAAGATTCAGTTCAAACCC
ATTTCAATTTTCTGTTCTCCGATTCCTCAGGCGAGCTTTATAAGCTCGCC
TCTCCCAGATCATGCCCGGAATCTTCAAAACCTTCCACTTCTCCGCCGTC
TTCATCGCCGTCTTCGCCCTCTGCGTTCTCCCGCCTGCGACAGCCGATGA
CGGCCACTCGACGGTTCTCCGGCTGCCGTCCCAGGTCGCCGGTGACGAAG
GGCAGAAAGTATGCGGCGGGGTGGCGCCGTCGTCGTGCCCCGTTAAGTGT
TTTCGGACGGACCCGGTTTGCGGCGTGGACGGTGTGACGTACTGGTGCGG
GTGCAGCGAAGCCGCGTGCGCCGGCGCACAGGTTGCGAAAATGGGGTTCT
GTGAAGTGGGGAATGGCGGTTCCGTCCCTCTGTCTGGTCAGGCATTGCTT
TTGGTGCATATTGTGTGGCTCATCGTACTAGGTTTCTCCGTCTTCTTTGG
TCTTTTTTGAAAGAGGATGTAACAGTAACAGTAGTATACGTACGCATAGC
AGATAGAGTTACGTATTATTGTACGACTATGTCTATACGATGCTTATGGC
TATTCTTGTTTTCTAAGGAATGTTTTAGTTCGTCGGAGAACATCATAGAA
TTCAGATTTTTAGACACTTTGGTCCTTGTAATATTCTCTCTGGAAATGCA
GCGTTACATTGTTGTCACTATTGATGAATTTCCCTTACAATATTTTGTGT
TTTTTGGAATGAGAATATTTCTTGTTTAT
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protein sequence of Vigun09g137900.1_Vu_IT97K-499-35_v1.1

>Vigun09g137900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g137900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g137900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=133bp
MPGIFKTFHFSAVFIAVFALCVLPPATADDGHSTVLRLPSQVAGDEGQKV
CGGVAPSSCPVKCFRTDPVCGVDGVTYWCGCSEAACAGAQVAKMGFCEVG
NGGSVPLSGQALLLVHIVWLIVLGFSVFFGLF*
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mRNA from alignment at Vu09:29965710..29966638+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g137900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g137900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g137900.1; organism=Vigna unguiculata; type=mRNA; length=929bp; location=Sequence derived from: Vu09:29965710..29966638+ (Vigna unguiculata
TGTTAGCACCTGAAGTTGCATAGAACAGATAGAGAAACAGCAAAATCAAT
GACGAAGATTGAGATGAAATAAATAGTGAAAGAAAGGTGCAGAGTAATTC
GTGTAGTTCAACCACCACTCTCACCCCTCAATTTTCTTAACCTATATTAA
AAACTCGATCCAACTTTTTCTCCATCGTAACTAAGATTCAGTTCAAACCC
ATTTCAATTTTCTGTTCTCCGATTCCTCAGGCGAGCTTTATAAGCTCGCC
TCTCCCAGATCATGCCCGGAATCTTCAAAACCTTCCACTTCTCCGCCGTC
TTCATCGCCGTCTTCGCCCTCTGCGTTCTCCCGCCTGCGACAGCCGATGA
CGGCCACTCGACGGTTCTCCGGCTGCCGTCCCAGGTCGCCGGTGACGAAG
GGCAGAAAGTATGCGGCGGGGTGGCGCCGTCGTCGTGCCCCGTTAAGTGT
TTTCGGACGGACCCGGTTTGCGGCGTGGACGGTGTGACGTACTGGTGCGG
GTGCAGCGAAGCCGCGTGCGCCGGCGCACAGGTTGCGAAAATGGGGTTCT
GTGAAGTGGGGAATGGCGGTTCCGTCCCTCTGTCTGGTCAGGCATTGCTT
TTGGTGCATATTGTGTGGCTCATCGTACTAGGTTTCTCCGTCTTCTTTGG
TCTTTTTTGAAAGAGGATGTAACAGTAACAGTAGTATACGTACGCATAGC
AGATAGAGTTACGTATTATTGTACGACTATGTCTATACGATGCTTATGGC
TATTCTTGTTTTCTAAGGAATGTTTTAGTTCGTCGGAGAACATCATAGAA
TTCAGATTTTTAGACACTTTGGTCCTTGTAATATTCTCTCTGGAAATGCA
GCGTTACATTGTTGTCACTATTGATGAATTTCCCTTACAATATTTTGTGT
TTTTTGGAATGAGAATATTTCTTGTTTAT
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Coding sequence (CDS) from alignment at Vu09:29965710..29966638+

>Vigun09g137900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g137900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g137900.1; organism=Vigna unguiculata; type=CDS; length=399bp; location=Sequence derived from: Vu09:29965710..29966638+ (Vigna unguiculata
ATGCCCGGAATCTTCAAAACCTTCCACTTCTCCGCCGTCTTCATCGCCGT
CTTCGCCCTCTGCGTTCTCCCGCCTGCGACAGCCGATGACGGCCACTCGA
CGGTTCTCCGGCTGCCGTCCCAGGTCGCCGGTGACGAAGGGCAGAAAGTA
TGCGGCGGGGTGGCGCCGTCGTCGTGCCCCGTTAAGTGTTTTCGGACGGA
CCCGGTTTGCGGCGTGGACGGTGTGACGTACTGGTGCGGGTGCAGCGAAG
CCGCGTGCGCCGGCGCACAGGTTGCGAAAATGGGGTTCTGTGAAGTGGGG
AATGGCGGTTCCGTCCCTCTGTCTGGTCAGGCATTGCTTTTGGTGCATAT
TGTGTGGCTCATCGTACTAGGTTTCTCCGTCTTCTTTGGTCTTTTTTGA
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