Transcript Overview
Name Vigun09g164100.1 Unique Name Vigun09g164100.1_Vu_IT97K-499-35_v1.1 Type mRNA Organism Vigna unguiculata (cowpea) Sequence length 3736
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun09g164100.1 Vigun09g164100.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun09g164100.1_Vu_IT97K-499-35_v1.1 Vigun09g164100.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g164100.1.v1.1.CDS.4 Vigun09g164100.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun09g164100.1.v1.1.CDS.3 Vigun09g164100.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun09g164100.1.v1.1.CDS.2 Vigun09g164100.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun09g164100.1.v1.1.CDS.1 Vigun09g164100.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g164100.1.v1.1.three_prime_UTR.1 Vigun09g164100.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g164100.1.v1.1.five_prime_UTR.1 Vigun09g164100.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
Homology
BLAST of Vigun09g164100.1 vs. DB:Swiss
Match:
NRG2_ARATH (Nitrate regulatory gene2 protein OS=Arabidopsis thaliana OX=3702 GN=NRG2 PE=1 SV=1)
HSP 1 Score: 161.384 bits (407), Expect = 1.124e-39
Identity = 130/455 (28.57%), Postives = 231/455 (50.77%), Query Frame = 1
Query: 1168 RDLREVVVEIQDEFVTASNFGKEVALLLEVCKPPYRSRVAALR--VILSRILQMVAPSRLPSDPPSIQFSSREIKLARAY-CGEPGKDFKTNPENLSSTLEKLYAWEKKLYKEVKDEERLRAIYEKKFKRLKTLDNIGAESSKIDATRASVRKLQTKINICIRTAETIMGRIHKLRDNELQPQLAALINGFTKMWKFMLKCHQKQFQAIMESKSQSLKINVGLPGDEVLR-AIVELEKELLNWCSQFNIWVKTQKTYVKNLNEWL-LRCLPNEPEETADGIAPFSPSRLDAPPVFIICNDWHQAMTRISETEVAEAMHEFAQKLHELWERQDDAQRQRIKAEYLRKDFEKQLRTLRTEMGGIEHDKVSGKTALSKLTSDSGV---------SPLDDLKVDLDSMKKKLHEERVRHKEAVKLVRDAANNSLQAGLIPIFKTLESFTSEVVKAHEQV 2490
RDL+E++ I++ F A+ G++V+ +LE+ + + L+ VI S L S S PP LA Y D + ++L STL++L AWEKKLY+E+K E + +EKK +L++ + G + +K+D T+AS+ +LQ+ I + + T I +LRD +L PQL L +GF MWK M + H+ Q + + + + G E+ R A +LE + +W S F+ +K Q+ ++ +++ W L LP E+ A+ LDA + C++W A+ RI +T +EA+ F +H + +Q D + + + E K+ EK+ ++R +E + + +SG PL D K +L ++++ EE V++ +A+++ R N+LQ GL +F++L SF++ +++ + V
Sbjct: 355 RDLKEIIDAIKENFDKAAASGEQVSQMLELGRAELDRSFSQLKKTVIHSSSLLSNLSSTWTSKPP----------LAVKYRIDTTALDQPNSSKSLCSTLDRLLAWEKKLYEEIKAREGFKIEHEKKLSQLQSQEYKGEDEAKLDKTKASITRLQSLIIVTSQAVTTTSTAIIRLRDTDLVPQLVELCHGFMYMWKSMHQYHETQNSIVEQVRGLINRSGKGESTSELHRQATRDLESAVSSWHSSFSSLIKFQRDFIHSVHAWFKLTLLPVCQEDAAN----HHKEPLDA---YAFCDEWKLALDRIPDTVASEAIKSFINVVHVISAKQADEHKIKKRTESASKELEKKASSVR----NLERKYYQSYSMVGVGLPESGPDNQHMLDARDPLSDKKSELAVCQRRVEEEMVKYSKAIEVTRAMTLNNLQTGLPGVFQSLTSFSALFMESLQTV 788
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
500 1000 1500 2000 2500 3000 3500 Score = Score = Score = Score = Score = Score = Score = Score = Score = Score = Expect = 1.7E-27 / Score = 95.3 Expect = 6.2E-107 / Score = 357.5 Sequence Coil mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite PF04783 PF04782
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 769..789 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 307..330 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 297..353 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 63..132 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 63..143 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 195..224 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 331..353 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 252..285 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 195..220 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 240..285 IPR006868 Domain of unknown function DUF630 PFAM PF04783 DUF630 coord: 1..59 IPR006867 Domain of unknown function DUF632 PFAM PF04782 DUF632 coord: 392..709
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun09g164100.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g164100.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g164100.1; organism=Vigna unguiculata; type=mRNA; length=3736bp back to top protein sequence of Vigun09g164100.1_Vu_IT97K-499-35_v1.1
>Vigun09g164100.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g164100.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g164100.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=840bp back to top mRNA from alignment at Vu09:33214199..33220567-
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g164100.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g164100.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g164100.1; organism=Vigna unguiculata; type=mRNA; length=6369bp; location=Sequence derived from: Vu09:33214199..33220567- (Vigna unguiculataAATATTAAATTAAAATTAAGTATTAAATATGGAAATAAAGATAAATAAAT
ATAAAGAAGCATGAGATGGTATTATGAAGAAAGGGGTCCTGTTGCCAATG
GCGGGTCTCCTCTTTCTCCCTCTTCTTCTCTTCTCCCACTCTCTCAAACT
TCCATAAATCTCATTCAATTTTTCTTTAAATTCAAACACAAACAACAAAA
ATCAGATCCCCACCATCACCAATCTCAATACAATTTCTTCTTATTATTTT
ATTGCATAACATCCTCCCCACCCTCTTTTCTTTTTCATGCTTCAAAATTA
ATAATTAAAAATCTCTCTGGAATCTTCATTCTCTGTTACTCTCCCTTCCA
TCAATCCCCTTGCATGCACACACACTCACTCACCCTTCACTCTTTCTCAC
GCGCTCACTTCTTCTTTAATGATATACACAAAGTGTATCAAGCAAACGCC
ATCACCATCTTCTTCGTTATGCGGCGCCGTCACCATGATGCAGTGCCGCG
GTGAAGCATGTTCTCCGGCGTCGACATCGGCAACTCAGTCTACGATCTCC
GGTCACTGAC ATGGGCTGCGGCGGCTCCAAGGTGGAGGACTTCCCCGCTG
TGGCTCTGTGCAGAGAGCGGAAGAGATTTCTAAAAGCCGCATCGGAGCAA
CGCTATGCTCTTGCGGCGGCACACGTGGCGTATTTCCATTCGCTCAGGGA
AATCGGCGATGCTCTTCGCCAATTCGCCGAACAAGACCTGACTACCACTG
GTTCTTCCTCTCCGGTTCTTACATTACCATCCGAAACCAAAAGCGTCAAC
AATAACAAACTTTCATCCTCTTCTGCTTCAATCTCTCATGTGGATTCTCC
TGAGGGTTCTCACTTGCCTCTTTCTTCTGGATCCGAATTGAGTTCTCCTT
CTCCTACTCATTCTCATTTGCACTCTCATTCTTCTTCTTCCTCGCCTCAC
ATTCATGGTTCCCCAGAACCAGACCCACCTCCTTACGGGTACTATCAAAA
TTTCCAATACGCCCATTACATGAAGAGGTCTGTCCCTAATGGGAAACCAA
TGGTATATGAAGAACCAGAGAGACACGTGGCAACAATTGGACAATGGCCT
GATCCTTCTTACGGTTACGGTTTCTACGGGTATCCGGGTGGGGATTACCC
TCACTACCCTCCCCCGGGACCGTCGTCATCTCCGCCGCCTCCCCCTCCCG
CGCCGCCGTCTCCTCCCCGCGTCTCTACTTGGGATTTCCTCAATGTCTTC
GATAGCTTCGAGAACGGGTATCCGATTTATCCCCCTCGGTTCGGGTCGAG
CGCGAGCAGTCCCGATTCGAAGGAGGTGAGGGAGAGAGAGGGGATTCCCG
AATTGGAAGATGAGACGGAGCACGAAGTCCAGAGAGCGGCTCCGGTGAAG
GTGAAGGAGAAGGAGGGTAAAAAGGTGGCTGAGGAAAAGGGTTTCGCTGG
AGCGAGGGATTTCGGGGAAGGGCCTTCGAACACTAAAACGGTGCCGTTGC
AGCAGGTGAGTAGCAGCGAGGGGAGTTCCAAGACGGTGAGGTTCCATGAC
GGCAGCGATAACGGTTCCGTTGAGAAAGAGATAAGGAGCAGTCCCGACAC
TGTTGTTTCCGAAGAGCATGGTGCGAAGAAAGGGGTGAGCTTTGAGATTG
ATGAAGCGACGGTCGCGGCGGTGGAAGGTGACTCTTCCGTTCTGAGTAGT
GTAACCACTTTGTCTGCGCACGGAACCAGGGATCTGCGTGAGGTTGTGGT
GGAGATTCAGGATGAGTTTGTGACGGCATCGAATTTTGGAAAAGAGGTTG
CATTGTTACTTGAGGTTTGCAAACCGCCTTATCGGTCTAGAGTTGCTGCA
CTTAGAG GTATAAAGCTCTTTATCCTTTTCTGCTAAATGTTAGACTTATG
CCTTACCTTTATTTCATTCAGTTTTTGTTCGTGTGTGGAGCTTGTAGATG
GTGATGTGTGAGTGTTACGTATTTTGCTTCTTTTTCTGAGCCTGTAGACG
GTAGAGGAAGGAAAGATGACGTAGATTGGCTTATTTGCTCCTTTTGGGAC
TTTGGTTTTATAATTCGTTTTTGTTTTTATTTTTATTTAGGATTATCTCG
TAATTAAGTTAGTGCTAGAGTAAGCTTGTTTTGTTTGTTTTATCCTTTAC
ATTTTGTTAAATTTCATTAGATTTAGTTTCTTTTTTTTTATTACAGTTTG
GCTTTGCATCCTCTTTAAAAACCTGGAGTCTGTTGTGGCTTTTGAGCAAT
AATTTCTATTAGAAAATAGCTAGGATGAATCCGACACCTAGGAGTGCTCC
ACACTCCACTGGAACACTGTTGTCTGCATGGTTGTTTTCTCATCCAAGGA
TGTGGGGAACGAGCGTCCGAAACTTCTCAGCCTGTATCCCAGTTGGGAGC
ATGTTTAGATTTCAGTCGAGAGAGTTCAAATTTACTATTATTCTCAAAAC
AACAAATTATTTCTTCTTCATTTTTGTGCTTCGGAATTTACAATTTTGTA
TTGAAGTTTGCAAAAGTATTTTCCCGAATTTAATCCAAAATTAGCTTGAG
TTGTCTTCCCTTTTTTTGTTTTTTCTTTTGACTCTGGCAGCGTGCTTTGT
TAGAATAAAACATGGGTTATGCAATTTGATGATCATTCCGTGTACACCGG
TTTAATTATCATGATTTTTCTGTATTTATGCAGACAATATAATCTAAAAC
AAATTAGATAGCGTTGAGAGAGAAAAAGGCAAGAAGCTAAATACTTCATT
AAATGGTATAGCACGTTTATTGTAAACCAGTTTCTGTACAACTTACTGCA
ACAGACTTGTGTTGATTTGGCAAGCATGAGCTCCAAGCAGAATACTTTTT
ATGCTGTATAATTACGTTACAAGACGTGTTTTGTTGTTTCTTTCGTTTAG
TCATTTTCTTCCGTGCTATTTTCCTTGTCTCCTCTCCTAAAACAAATAAT
CAAGTCATGGACAGACTGCAGGCGCTACCAGATTGTGTGATCGACTGTGA
ACCAAGTTGAATTTATAAAGATTTTTCGTTATGAACCCTTTAGTTTTATA
TTTCCATACTCGAGCCTCCCAGGCTTGTGCCTCAAGAAAATGTAGATGCA
TTTTTATTTAAAGGTCCAAGTAAACTGAGTCATTCAGATGATTTTTCTAC
AGCAAGCATACATACATGTGAGCGTATTTGTGGGGCTTTATTATTAAACT
GTGTTTTTTACTCTCCATACCCTCTTTGATGTTGAGTTTGAAACATCTGT
CAACTAAATGTCTTCCTATGTTATGTGGTTTTATGCAGTTATCTTGTCCA
GAATCTTGCAGATGGTAGCACCTTCCAGGTTACCCTCAGATCCTCCATCT
ATACAATTTTCTTCTAGGGAAATAAAGTTGGCACGAGCATACTGTGGGGA
ACCTGGGAAAGACTTCAAGACAAATCCAGAAAATCTTTCATCCACATTGG
AGAAACTTTATGCGTGGGAGAAGAAATTGTATAAGGAAGTTAAG GTATGA
GCATGATTATTTTCAAAATAATCCAAGTTTAATGAATCATGAAGTTAGAA
ATGTTTTGTGCCATTCATAGTTTGATATCCTTCATACTGATTTGCTATAT
GACCTACTTGTTGAGGGCAAAGGCTTCTAAATCGCTTATGATATAGTCCC
TTTAATACTTTCATGTTCTTGGACAGGAGGGGATATAATTTGAAACTACA
GTACTCAATAACATGTATTTTCAATGTCATGCATATTCAGCATCGTCTTC
AATGATAAATTATTTGTATTAATCAATAAATTGTAGATTATACCACATAC
TTGTATTGATAAGTGGTTCTAGATAATATACTTTGTGTTAATTTGAAATT
ATGCTTATGTATTTATATTTTTGCCCTGTTCTCAGGATGAAGAGAGGTTA
CGGGCCATTTATGAGAAAAAGTTCAAGAGACTGAAAACATTGGATAATAT
AGGAGCTGAATCTAGTAAAATTGATGCTACTAGAGCATCAGTTAGGAAGT
TGCAAACAAAAATCAATATTTGCATCAGAACCGCTGAAACTATAATGGGA
AGAATACATAAATTGAGGGATAATGAATTGCAGCCTCAACTTGCGGCATT
GATTAATGG GTATCAAATTGCTTCACTTATTCACTATGCAATTTTTATCT
GTCATTTCTTGCTAATTTCTGGTCACAAACATTTAAATTTTTTACCAGAA
AATACTGTCAAAAGGCTTTTTTTTGTTGTCATTTCAAGAGGCAATGTGTT
TGGTCTCTCTTCTTCCCTATAAAGAGTAGGCGAAAATAAGTGAGATGAAG
TATTAATGTTTTTAAACACATAAAAGCCACTTTGTGAAGTTTTACATGTT
TTTTTGCCATGTTTTAATATCTCCGTGAATTATGACGATATTTAATGATC
TAAGCCATATAATTGTTTCCACTTTTTTGTACAAATAAATTGAGTAGAAA
CCTTGCTCTCCTTAGATTCTTCAATTAACAGTTTTTGTTCACCACAGTTC
AATTGGCTCAATACAACTCCCTCATTCACCTAAGGATGAGAGATCCCTTA
TGGAATGTTTGAGTTTGCAATTTAAAAATCTTGCTGTCATTATTAATGCC
TCTGGATGCAAGAGAGGCCAATAATTGATGGTACAAGGTAATTTATGTGC
CAAATCAGACATTCCATTGAGAATTGTCTCAGTCGGATAGAGATATGGCA
CTGAGTCAACGTATATGTTCAAGTTATTGATGAGAAATAGGCTTCTGTGA
TTATGTCGTCAGTGGTTAGTGGTTGAAGACATGTTTCCGTCATCATTATT
AACATTATCATATTTAGTTTTGGAATGGATAGATCTTTTTTTTTGTACAT
GTTTGAATTGTTTTTCTTGAGTTAGAAGTTATGGAGCTATTGATTTGATG
AATAGCCTATTTGTCAGCAGATTCACAAAAATGTGGAAATTCATGCTCAA
ATGCCACCAGAAACAGTTCCAAGCTATCATGGAGAGTAAAAGTCAGTCTC
TTAAGATTAACGTTGGTCTGCCAGGAGATGAAGTTCTGAGGGCCATTGTA
GAACTTGAAAAGGAGCTTTTGAATTGGTGCAGTCAGTTCAACATTTGGGT
TAAGACTCAAAAAACTTATGTCAAGAATTTGAACGAGTGGCTCTTGAGAT
GCCTTCCTAATGAACCTGAAGAAACAGCTGACGGTATTGCCCCTTTCTCT
CCAAGTCGGCTTGATGCTCCACCAGTTTTTATTATTTGTAATGATTGGCA
TCAAGCAATGACTAGAATTTCAGAAACGGAGGTGGCAGAGGCCATGCATG
AATTTGCTCAAAAACTACATGAGTTATGGGAAAGGCAAGATGACGCTCAA
CGCCAGAGAATCAAAGCTGAGTATCTCAGAAAGGACTTTGAGAAACAACT
TAGAACATTGCGCACAGAAATGGGAGGCATAGAACATGATAAAGTTTCAG
GAAAGACTGCATTGTCGAAGCTCACTTCTGATAGCGGTGTTTCACCACTA
GATGATCTAAAGGTGGATTTAGATTCTATGAAGAAGAAATTACATGAAGA
GAGGGTCAGGCATAAAGAAGCCGTCAAACTTGTTCGTGATGCAGCTAATA
ATAGTTTACAGGCTGGTTTGATTCCCATTTTTAAGACATTAGAGAGTTTC
ACTTCAGAGGTGGTGAAAGCTCATGAACAAGTTAGGGTTCAAAATGCTAC
TGGGCATTCGTAG AGATTCCAACTATTTTGTTTCTTTTGACATCACATGA
TTCCGTTTACTAGAGTGAATTGATTGGGGGAGTTTGGGGGTTGTACTTGG
AAGATTTAGAACTAACCCACCAGTTTTGCAGCTATAGTTAGTCTTATTAT
GTAGGAAAGCGTTTGCTTGGAACATGTTTCAGCACTGAAGAGTCACCCAA
TCTACAGTTAGAGGAAAATTGTATAGCAAAAAAATTCATTTATTGATTTA
TTGGTTGTAACTTGAAGGTGGACTGTATATGTTGCATATGCCTAGGAAGG
AGTAGGATCTTTATGAGGAGGAAGCAGGGAAATTTTGTAGATGTTCAAGA
ATGATATGGTGAATTAAAACATAATCTCCTGCAGCTTTGATTCTTTCCTC
TTTGATGAAAGAGTTGAATATGAAACCAATGTTCAGCAGCCCGATGGAGG
AAACTAAATTTTTGTAATGATAGGAGGGAGGAGGGTTCACAGTGAAGAGA
AGTGTTGTAAATAGTACCTAGTGTCATTTGCACCCAACACTGAATTGCCC
TAATCCCTATATGGAAAGGGAAAAATAGAATGGGATGCAGATGAACTATG
AGGCAATAAAAAGTTTAACTTACTTGGTTGTGAAAAAATCGGATAGGAAG
GATATTTAAATTTTTGGAC back to top Coding sequence (CDS) from alignment at Vu09:33214199..33220567-
>Vigun09g164100.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g164100.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g164100.1; organism=Vigna unguiculata; type=CDS; length=2520bp; location=Sequence derived from: Vu09:33214199..33220567- (Vigna unguiculata back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
