Vigun09g165000.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g165000.1 vs. DB:Swiss
Match: BBR_ARATH (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 3.590e-25 Identity = 47/93 (50.54%), Postives = 70/93 (75.27%), Query Frame = 1 Query: 316 LSYEELMELGEFIGEETRGLSANEISTCLNPYTCQRGERKSGID-RCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPICSNEVST 591 LSYEEL+ LG+ +G E+RGLSA+ I++ L + G+ ++G + CVIC+++YED E ++ L C+H YH++CI+ WL+I KVCP+CS EVST Sbjct: 243 LSYEELLALGDIVGTESRGLSADTIAS-LPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVST 334
BLAST of Vigun09g165000.1 vs. DB:Swiss
Match: BB_ARATH (E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 5.814e-22 Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 1 Query: 316 LSYEELMELGEFIGEETRGLSANEISTCLNPYTCQRGE---RKSGIDRCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPICSNEV 585 ++YEEL+ELGE +G E+RGLS I T L + G RK +RCVICQ++Y+ GE + L C+H YH++CISKWL I KVCP+C++EV Sbjct: 150 MTYEELVELGEAVGTESRGLSQELIET-LPTKKYKFGSIFSRKRAGERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
BLAST of Vigun09g165000.1 vs. DB:Swiss
Match: MBR1_ARATH (E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 9.264e-17 Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 1 Query: 316 LSYEELMELGEFIGEETRGLSANEISTCLNPYTCQRG-----ERKSGIDRCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPICSNE-VSTP 594 +SYEEL+ LGE IG+ + GLS I + + E I+ C ICQ EY +G+ + L+C H +H DCI +W+ IK +CPIC E + TP Sbjct: 606 MSYEELLALGERIGDVSTGLSEEVILKAMKQHKHTSSSPSSVELHQNIEPCCICQEEYVEGDNLGTLKCGHEFHKDCIKQWVMIKNLCPICKTEALKTP 704
BLAST of Vigun09g165000.1 vs. DB:Swiss
Match: HIP1_ORYSJ (Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=39947 GN=HIP1 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 5.776e-16 Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1 Query: 316 LSYEELMELGEFIGEETRGLSANEISTCLN--PYTCQRGERKSGIDRCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPICSN 579 +SYEEL+ L E IG + GLS E++ L ++ R E + C ICQ EY DG+ + L C H +H C+ +WL +K CPIC N Sbjct: 573 MSYEELLALEERIGNVSTGLSEEEVTKLLKQRKFSSWRLEASVEEEPCCICQEEYVDGDDLGTLDCGHDFHVGCVRQWLVVKNTCPICKN 662
BLAST of Vigun09g165000.1 vs. DB:Swiss
Match: MBR2_ARATH (E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.842e-14 Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 1 Query: 316 LSYEELMELGEFIGEETRGLSANEISTCL--NPYTCQRGERKSGIDRCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPIC 573 +SYEEL+ LGE IG+ + GLS I + + +T ++ C +CQ EY +G+ + L C H +H C+ +WL +K +CPIC Sbjct: 572 MSYEELLALGERIGDVSTGLSEEVILKVMKQHKHTSSAAGSHQDMEPCCVCQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPIC 659
BLAST of Vigun09g165000.1 vs. DB:Swiss
Match: RHG1A_ARATH (Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.168e-13 Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1 Query: 316 LSYEELMELGEFIGEETRGLSANEISTCLNPYTCQRGERK-SGIDRCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPIC 573 +SYEEL+ L E IG+ G++ IS L + + + C +CQ EY +GE + L+C H +H+ CI +WL+ K +CPIC Sbjct: 591 MSYEELLALEERIGDVCTGVNEETISNRLKQRKYKSNTKSPQDAEPCCVCQEEYTEGEDMGTLECGHEFHSQCIKEWLKQKNLCPIC 677
BLAST of Vigun09g165000.1 vs. DB:Swiss
Match: ZFP1_ORYSJ (Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.364e-12 Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1 Query: 316 LSYEELMELGEFIGEETRGLSANEI------------STCLNPYTCQRGERKSGIDRCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPIC 573 ++YEEL+ L E IG+ GL+ + I S+C+ + + E D C+ICQ EY+ E + L C H YH DCI +WL +K +CPIC Sbjct: 417 MTYEELLALEEQIGDVNTGLAKSYIVEKLKTSLFVPGSSCM---SNKSSESSMENDACIICQEEYQVKECIGTLDCGHRYHEDCIKQWLMVKNLCPIC 511
BLAST of Vigun09g165000.1 vs. DB:Swiss
Match: RN165_HUMAN (E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.996e-11 Identity = 36/103 (34.95%), Postives = 51/103 (49.51%), Query Frame = 1 Query: 319 SYEELMELGEFIGEETRGLSANEISTCLNPYTCQR------------GERKSGIDRCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPICSNEVST 591 SYEEL++L + +G TRG N I P+ ++ GE ++C IC EDGE V L C H +H C+ +WL + K CPIC ++ T Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 340
BLAST of Vigun09g165000.1 vs. DB:Swiss
Match: RN165_MOUSE (E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 2.023e-11 Identity = 36/103 (34.95%), Postives = 51/103 (49.51%), Query Frame = 1 Query: 319 SYEELMELGEFIGEETRGLSANEISTCLNPYTCQR------------GERKSGIDRCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPICSNEVST 591 SYEEL++L + +G TRG N I P+ ++ GE ++C IC EDGE V L C H +H C+ +WL + K CPIC ++ T Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 341
BLAST of Vigun09g165000.1 vs. DB:Swiss
Match: RNF38_HUMAN (E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens OX=9606 GN=RNF38 PE=1 SV=4) HSP 1 Score: 64.3142 bits (155), Expect = 6.841e-11 Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 1 Query: 319 SYEELMELGEFIGE-ETRGLSANEISTCLNPYTCQRGERKSGIDRCVICQVEYEDGEAVVALQCEHPYHADCISKWLQIKKVCPICSNEVS 588 +YE L+ L E +GE + RGL+ +I L Y +S CV+C ++E + + L C H +HA C+ KWL+ + CPIC + S Sbjct: 419 NYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 508 The following BLAST results are available for this feature:
BLAST of Vigun09g165000.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g165000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g165000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g165000.1; organism=Vigna unguiculata; type=mRNA; length=615bpback to top protein sequence of Vigun09g165000.1_Vu_IT97K-499-35_v1.1 >Vigun09g165000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g165000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g165000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=205bpback to top mRNA from alignment at Vu09:33317593..33318207- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g165000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g165000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g165000.1; organism=Vigna unguiculata; type=mRNA; length=615bp; location=Sequence derived from: Vu09:33317593..33318207- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:33317593..33318207- >Vigun09g165000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g165000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g165000.1; organism=Vigna unguiculata; type=CDS; length=615bp; location=Sequence derived from: Vu09:33317593..33318207- (Vigna unguiculataback to top |