Vigun09g168000.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g168000.1 vs. DB:Swiss
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 4.678e-35 Identity = 61/97 (62.89%), Postives = 75/97 (77.32%), Query Frame = 1 Query: 520 DTRDYFLGPGLNELIEQITEND-RQGPAPAPERAIDAIPTVKIASAHLKE-NSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRH 804
+T DYF GPGL EL EQ++ R+GP PAP AIDA+PT+KIA HL+ +S CPVC++EFE+G EA+++ C HIYHSDCIVPWL HNSCPVCR
Sbjct: 136 NTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQ 232
BLAST of Vigun09g168000.1 vs. DB:Swiss
Match: RZF1_ARATH (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.060e-33 Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 1 Query: 511 RTVDTRDYFLGPGLNELIEQITEN-DRQGPAPAPERAIDAIPTVKIASAHLKE-NSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCR 801
R + DYF GPGL ELIEQ++ +GP PAP+ +IDA+PT+KI HLK +S CPVC++EFE+ EA+++ C HIYHSDCIVPWL HNSCPVCR
Sbjct: 129 RGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCR 227
BLAST of Vigun09g168000.1 vs. DB:Swiss
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.167e-30 Identity = 53/94 (56.38%), Postives = 70/94 (74.47%), Query Frame = 1 Query: 529 DYFLGPGLNELIEQITEND--RQGPAPAPERAIDAIPTVKIASAHLK-ENSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCR 801
DYF GPGL +LI+Q+ END R G PA + AIDA+PTVK+ LK E ++C VC +EFE G + +++ CKH++H DC++PWL LHNSCPVCR
Sbjct: 164 DYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCR 257
BLAST of Vigun09g168000.1 vs. DB:Swiss
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.051e-29 Identity = 53/95 (55.79%), Postives = 72/95 (75.79%), Query Frame = 1 Query: 529 DYFLGPGLNELIEQITEND--RQGPAPAPERAIDAIPTVKIASAHL-KENSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRH 804
DYF+GPGL +LI+Q+ END R G PA + AI+A+P V I ++L E ++C VC ++FE G EA+++ CKH+YH DC++PWL LHNSCPVCRH
Sbjct: 172 DYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRH 266
BLAST of Vigun09g168000.1 vs. DB:Swiss
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.544e-22 Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 529 DYFLGPGLNELIEQITEND-------RQGPAPAPERAIDAIPTVKIASAHLKENSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCR 801
+ +G G L+EQ+++ + R G PA + AI+++P V+I+ H K + C VC E FE G E RE+ CKHI+H DCIVPWL + NSCPVCR
Sbjct: 159 EILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCR 256
BLAST of Vigun09g168000.1 vs. DB:Swiss
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.773e-21 Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 1 Query: 529 DYFLGPGLNELIEQITEND-------RQGPAPAPERAIDAIPTVKIASAHLKENSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCR 801
+ +G G L+EQ+++ + R G PA + AI+++P V+I+ H+ + C VC E FE EARE+ CKH++H DCIVPWL + NSCPVCR
Sbjct: 143 EILMGSGFERLLEQLSQIEASATGIGRSGNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCR 240
BLAST of Vigun09g168000.1 vs. DB:Swiss
Match: SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.686e-21 Identity = 44/94 (46.81%), Postives = 65/94 (69.15%), Query Frame = 1 Query: 526 RDYFLGPGLNELIEQITEND--RQGPAPAPERAIDAIPTVKIASAHLKENSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCR 801
+Y LG GL+ L++ + E+D R G PA + A++A+PTVKI +E C VC ++ EVG +A+++ C+H +HS CI+PWL LH+SCPVCR
Sbjct: 152 EEYVLGAGLSLLLQHLAESDPSRNGTPPAKKEAVEALPTVKI-----EEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCR 240
BLAST of Vigun09g168000.1 vs. DB:Swiss
Match: RN126_XENTR (E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.592e-20 Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1 Query: 529 DYFLGP-GLNELIEQITEN-DRQGPAPAPERAIDAIPTVKIASAHLKENSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCR 801
DY G GL+ +I Q+ + GP PA I A+PT++I H+ +CPVC+E++ VG R+L C H++H+DCI+PWL H++CPVCR
Sbjct: 176 DYAWGANGLDTIITQLLNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 268
BLAST of Vigun09g168000.1 vs. DB:Swiss
Match: R126B_XENLA (E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis OX=8355 GN=rnf126-b PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 5.077e-20 Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1 Query: 529 DYFLGP-GLNELIEQITEN-DRQGPAPAPERAIDAIPTVKIASAHLKENSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCR 801
DY G GL+ +I Q+ + GP PA I A+PT++I H+ +CPVC+E++ VG R+L C H++H+DCI+PWL H++CPVCR
Sbjct: 177 DYAWGANGLDTIITQLLNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269
BLAST of Vigun09g168000.1 vs. DB:Swiss
Match: R126A_XENLA (E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis OX=8355 GN=rnf126-a PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 5.230e-20 Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1 Query: 529 DYFLGP-GLNELIEQITEN-DRQGPAPAPERAIDAIPTVKIASAHLKENSKCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCR 801
DY G GL+ +I Q+ + GP PA I A+PT++I H+ +CPVC+E++ VG R+L C H++H+DCI+PWL H++CPVCR
Sbjct: 177 DYAWGANGLDTIITQLLNQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269 The following BLAST results are available for this feature:
BLAST of Vigun09g168000.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g168000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g168000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g168000.1; organism=Vigna unguiculata; type=mRNA; length=1702bpback to top protein sequence of Vigun09g168000.1_Vu_IT97K-499-35_v1.1 >Vigun09g168000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g168000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g168000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=353bpback to top mRNA from alignment at Vu09:33650182..33653173- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g168000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g168000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g168000.1; organism=Vigna unguiculata; type=mRNA; length=2992bp; location=Sequence derived from: Vu09:33650182..33653173- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:33650182..33653173- >Vigun09g168000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g168000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g168000.1; organism=Vigna unguiculata; type=CDS; length=1059bp; location=Sequence derived from: Vu09:33650182..33653173- (Vigna unguiculataback to top |