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Transcript Overview
| Name | Vigun09g175600.1 |
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| Unique Name | Vigun09g175600.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1880 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g175600.1 | Vigun09g175600.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun09g175600.1_Vu_IT97K-499-35_v1.1 | Vigun09g175600.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g175600.1.v1.1.five_prime_UTR.1 | Vigun09g175600.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g175600.1.v1.1.CDS.1 | Vigun09g175600.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g175600.1.v1.1.three_prime_UTR.1 | Vigun09g175600.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR008889 | VQ | PFAM | PF05678 | VQ | coord: 142..169
e-value: 4.7E-12
score: 45.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 57..146 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 107..133 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..29 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 57..101 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g175600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g175600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g175600.1; organism=Vigna unguiculata; type=mRNA; length=1880bp
GTATTTTCAAAGATTAGATATATATGACTTATTTTATTAATGGTTCCAAG
TAATAAGAGGATTAATAAGAGGTATCTTGTTAAGTAAAAGCTTGCAAACA
TTTCACACCACATGTCCACATTGTTTTGGCTTTTTTACACCTCTCTTTCT
CTCACTGTCCCTCTCACATTCACATCGACTTTGACCTGTGGCCAGCCACC
GGCATCTCTTTTATCTCTACTCCAATGCCGACCCCACCCTTTCACTCTCT
TCATCCATCATCATCTTCATCTTCTCAAACCCTCTTTTTCTCACTTCAAA
AAGCTTAAATAAcctttcttcttctttcatttccttcttttccttccctC
AAACCCTAATCCACTCCTCCTCCTAATTTACGCTCCTTCTCCTCCCACTC
TCCACCCTAATATTATGCATCATCATTAACATCTATATGCATACTTTCTT
TTTTCCTTTTCCTTTTCTCAGAACCCCGATTTCCCAATTGGATTTCGTGG
AAACTTTATCACCATACACGTAATTCACTGCTCACTATTTCAAATCATTT
CTTCTTCAGTCTTTCTTTTTTGCTCAACCTATGGATTCTGGTAACAGTGG
AAGCATCTCTTCCAGCGATGAAGAATACGATTCATCACACGCTGATCCAT
CCTTCCTCAATCATTTTGGTTCCATCTCCCACCCCCAACCATCCCTTGTT
CCTTCTCACCCCTCAATGTTTGATCTCTCCTCAACCTACCTCCATGCTCT
CTCACAATCCAACCCAAACCAAAACCCCCACAATTCCTTCTTAAACATGG
ACTCCCTTGGCCAAAGATCTCAATCCAATTGCACTCTCCCTCAAAGCCTA
CCATCTTCTTCATCACCCACACCACCAATAAACCAATGCTTCTCGGCTCC
TCAACCCCTTGCCCACGACAACACTAGTGCAAGACAACTCTCGTCACCGC
CACAAACCACCAACCTCGTACGCAACCCCAAGAAACGAAGCAGAGCTTCA
AGGCGTGCACCCACCACCGTTCTCACCACCGACACCACCAATTTCAGATC
CATGGTTCAAGAGTTCACCGGAATCCCAGCACCGCCCTTTTCACCTTCCT
TCTCTCGCCGCCTCCCTCTCCGCTCGAACCCTTTGCTTTCAGCTTCTTCA
AGGACCTCGTTGCACAACAACGCCACCATCAATCTTTCTCCTACTAATAA
CTCCATCAACTACCATCTACTTCCTGATCTGTCGTTACCCTATCAGCCCC
CACAGAATATCATGCAACATCACCCTATTCCCGCATTCCACCCCTCTTAT
TCTCTTCAACCTCTTGTCCCTGCAGGGTTTGGTGCAAAGTCTCTATTCAT
GCCCGCGCTTGATGCGCATGATCTGGTGGTTGCACAGGGTCATGAACACG
TGGTATCTGAGGGCATGCTTCTGAGGAGTGGCGGTGACGGTGATTGTAGA
GATGGAGGCATGGTTGGAGGAGGGAGAAGAGAGTCGTTTAGGTGCTTGGA
TGGGAACAACTATGGTGGGTGCAAGCTCAACATCTCGGTTTCTGCTTCTA
GCAGCGTGAACCATGAGAAGAACTTGGAGAATGGTAATTCCCCTAGGGAA
GGTGCCGTGGAAGCGTGGATTTGTTCTTCTGATCAATAGGATCTCGCGTG
TGTGAGAGTAAACAGTATACTCAACAGGTGAATCATTGCAGCGTGGAATT
TCATACACTGCAATGAATTAAGAGCGTCATCATGATGATGTTGATCCTAG
TGCTGTAGTGTTGGTGGTTAGCATTTGCAGCTATCAttttttttctttct
ttcttttttgctttaatttttttatattttttAAAGTATAGGTAGATAGG
GTGAGATTAATTTTATTTCATAGTATAAGG back to topprotein sequence of Vigun09g175600.1_Vu_IT97K-499-35_v1.1 >Vigun09g175600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g175600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g175600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=353bp
MDSGNSGSISSSDEEYDSSHADPSFLNHFGSISHPQPSLVPSHPSMFDLS
STYLHALSQSNPNQNPHNSFLNMDSLGQRSQSNCTLPQSLPSSSSPTPPI
NQCFSAPQPLAHDNTSARQLSSPPQTTNLVRNPKKRSRASRRAPTTVLTT
DTTNFRSMVQEFTGIPAPPFSPSFSRRLPLRSNPLLSASSRTSLHNNATI
NLSPTNNSINYHLLPDLSLPYQPPQNIMQHHPIPAFHPSYSLQPLVPAGF
GAKSLFMPALDAHDLVVAQGHEHVVSEGMLLRSGGDGDCRDGGMVGGGRR
ESFRCLDGNNYGGCKLNISVSASSSVNHEKNLENGNSPREGAVEAWICSS
DQ* back to topmRNA from alignment at Vu09:34716803..34718682+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun09g175600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g175600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g175600.1; organism=Vigna unguiculata; type=mRNA; length=1880bp; location=Sequence derived from: Vu09:34716803..34718682+ (Vigna unguiculata
GTATTTTCAAAGATTAGATATATATGACTTATTTTATTAATGGTTCCAAG
TAATAAGAGGATTAATAAGAGGTATCTTGTTAAGTAAAAGCTTGCAAACA
TTTCACACCACATGTCCACATTGTTTTGGCTTTTTTACACCTCTCTTTCT
CTCACTGTCCCTCTCACATTCACATCGACTTTGACCTGTGGCCAGCCACC
GGCATCTCTTTTATCTCTACTCCAATGCCGACCCCACCCTTTCACTCTCT
TCATCCATCATCATCTTCATCTTCTCAAACCCTCTTTTTCTCACTTCAAA
AAGCTTAAATAACCTTTCTTCTTCTTTCATTTCCTTCTTTTCCTTCCCTC
AAACCCTAATCCACTCCTCCTCCTAATTTACGCTCCTTCTCCTCCCACTC
TCCACCCTAATATTATGCATCATCATTAACATCTATATGCATACTTTCTT
TTTTCCTTTTCCTTTTCTCAGAACCCCGATTTCCCAATTGGATTTCGTGG
AAACTTTATCACCATACACGTAATTCACTGCTCACTATTTCAAATCATTT
CTTCTTCAGTCTTTCTTTTTTGCTCAACCTATGGATTCTGGTAACAGTGG
AAGCATCTCTTCCAGCGATGAAGAATACGATTCATCACACGCTGATCCAT
CCTTCCTCAATCATTTTGGTTCCATCTCCCACCCCCAACCATCCCTTGTT
CCTTCTCACCCCTCAATGTTTGATCTCTCCTCAACCTACCTCCATGCTCT
CTCACAATCCAACCCAAACCAAAACCCCCACAATTCCTTCTTAAACATGG
ACTCCCTTGGCCAAAGATCTCAATCCAATTGCACTCTCCCTCAAAGCCTA
CCATCTTCTTCATCACCCACACCACCAATAAACCAATGCTTCTCGGCTCC
TCAACCCCTTGCCCACGACAACACTAGTGCAAGACAACTCTCGTCACCGC
CACAAACCACCAACCTCGTACGCAACCCCAAGAAACGAAGCAGAGCTTCA
AGGCGTGCACCCACCACCGTTCTCACCACCGACACCACCAATTTCAGATC
CATGGTTCAAGAGTTCACCGGAATCCCAGCACCGCCCTTTTCACCTTCCT
TCTCTCGCCGCCTCCCTCTCCGCTCGAACCCTTTGCTTTCAGCTTCTTCA
AGGACCTCGTTGCACAACAACGCCACCATCAATCTTTCTCCTACTAATAA
CTCCATCAACTACCATCTACTTCCTGATCTGTCGTTACCCTATCAGCCCC
CACAGAATATCATGCAACATCACCCTATTCCCGCATTCCACCCCTCTTAT
TCTCTTCAACCTCTTGTCCCTGCAGGGTTTGGTGCAAAGTCTCTATTCAT
GCCCGCGCTTGATGCGCATGATCTGGTGGTTGCACAGGGTCATGAACACG
TGGTATCTGAGGGCATGCTTCTGAGGAGTGGCGGTGACGGTGATTGTAGA
GATGGAGGCATGGTTGGAGGAGGGAGAAGAGAGTCGTTTAGGTGCTTGGA
TGGGAACAACTATGGTGGGTGCAAGCTCAACATCTCGGTTTCTGCTTCTA
GCAGCGTGAACCATGAGAAGAACTTGGAGAATGGTAATTCCCCTAGGGAA
GGTGCCGTGGAAGCGTGGATTTGTTCTTCTGATCAATAGGATCTCGCGTG
TGTGAGAGTAAACAGTATACTCAACAGGTGAATCATTGCAGCGTGGAATT
TCATACACTGCAATGAATTAAGAGCGTCATCATGATGATGTTGATCCTAG
TGCTGTAGTGTTGGTGGTTAGCATTTGCAGCTATCATTTTTTTTCTTTCT
TTCTTTTTTGCTTTAATTTTTTTATATTTTTTAAAGTATAGGTAGATAGG
GTGAGATTAATTTTATTTCATAGTATAAGG back to topCoding sequence (CDS) from alignment at Vu09:34716803..34718682+ >Vigun09g175600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g175600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g175600.1; organism=Vigna unguiculata; type=CDS; length=1059bp; location=Sequence derived from: Vu09:34716803..34718682+ (Vigna unguiculata
ATGGATTCTGGTAACAGTGGAAGCATCTCTTCCAGCGATGAAGAATACGA
TTCATCACACGCTGATCCATCCTTCCTCAATCATTTTGGTTCCATCTCCC
ACCCCCAACCATCCCTTGTTCCTTCTCACCCCTCAATGTTTGATCTCTCC
TCAACCTACCTCCATGCTCTCTCACAATCCAACCCAAACCAAAACCCCCA
CAATTCCTTCTTAAACATGGACTCCCTTGGCCAAAGATCTCAATCCAATT
GCACTCTCCCTCAAAGCCTACCATCTTCTTCATCACCCACACCACCAATA
AACCAATGCTTCTCGGCTCCTCAACCCCTTGCCCACGACAACACTAGTGC
AAGACAACTCTCGTCACCGCCACAAACCACCAACCTCGTACGCAACCCCA
AGAAACGAAGCAGAGCTTCAAGGCGTGCACCCACCACCGTTCTCACCACC
GACACCACCAATTTCAGATCCATGGTTCAAGAGTTCACCGGAATCCCAGC
ACCGCCCTTTTCACCTTCCTTCTCTCGCCGCCTCCCTCTCCGCTCGAACC
CTTTGCTTTCAGCTTCTTCAAGGACCTCGTTGCACAACAACGCCACCATC
AATCTTTCTCCTACTAATAACTCCATCAACTACCATCTACTTCCTGATCT
GTCGTTACCCTATCAGCCCCCACAGAATATCATGCAACATCACCCTATTC
CCGCATTCCACCCCTCTTATTCTCTTCAACCTCTTGTCCCTGCAGGGTTT
GGTGCAAAGTCTCTATTCATGCCCGCGCTTGATGCGCATGATCTGGTGGT
TGCACAGGGTCATGAACACGTGGTATCTGAGGGCATGCTTCTGAGGAGTG
GCGGTGACGGTGATTGTAGAGATGGAGGCATGGTTGGAGGAGGGAGAAGA
GAGTCGTTTAGGTGCTTGGATGGGAACAACTATGGTGGGTGCAAGCTCAA
CATCTCGGTTTCTGCTTCTAGCAGCGTGAACCATGAGAAGAACTTGGAGA
ATGGTAATTCCCCTAGGGAAGGTGCCGTGGAAGCGTGGATTTGTTCTTCT
GATCAATAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008889 | VQ |
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