Vigun09g183800.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g183800.1 vs. DB:Swiss
Match: CUTA_ARATH (Protein CutA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CUTA PE=1 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 2.339e-66 Identity = 112/160 (70.00%), Postives = 130/160 (81.25%), Query Frame = 1 Query: 91 VGAFCMLSLGLSNIYT---PFYSSALKTGCVLSLLRSKLGVRSHSA-IRMEANSTTVPSIVVYVTVPNKEAGKKLAESIVTEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKAHHEYDVPEVISLPITGGNLKYLEWIKESTR 558
VGAFC+LS + + PF S ++ V+ LLRSK ++ S+ IRME +S TVPSIVVYVTVPN+EAGKKLA SIV EKLAACVN VPGIESVY+WEGK+Q+DSEELLIIKTRQSLLE LTEHV A+HEYDVPEVI+LPITGG+ KYLEW+K STR
Sbjct: 22 VGAFCVLSTLSISSLSSSSPFKSGCAQSFSVVPLLRSKFSSKAFSSSIRMEESSKTVPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYDVPEVIALPITGGSDKYLEWLKNSTR 181
BLAST of Vigun09g183800.1 vs. DB:Swiss
Match: CUTA1_ORYSJ (Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CUTA1 PE=1 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 6.154e-65 Identity = 95/112 (84.82%), Postives = 106/112 (94.64%), Query Frame = 1 Query: 226 MEANSTTVPSIVVYVTVPNKEAGKKLAESIVTEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKAHHEYDVPEVISLPITGGNLKYLEWIKESTRE 561
ME+ STTVPSIVVYVTVPNKEAGK+LA SI++EKLAACVN VPGIESVY WEGK+QTD+EELLIIKTR+SLL+ALTEHVKA+HEYDVPEVI+LPI GGNLKYLEW+K STRE
Sbjct: 65 MESTSTTVPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAEELLIIKTRESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 176
BLAST of Vigun09g183800.1 vs. DB:Swiss
Match: CUTA_HUMAN (Protein CutA OS=Homo sapiens OX=9606 GN=CUTA PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 9.574e-32 Identity = 52/112 (46.43%), Postives = 82/112 (73.21%), Query Frame = 1 Query: 229 EANSTTVPSIV--VYVTVPNKEAGKKLAESIVTEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKAHHEYDVPEVISLPITGGNLKYLEWIKESTR 558
++ S VP V +VT PN++ K++A ++V ++LAACVN +P I S+Y+W+GKI+ DSE L++IKT+ SL+ ALT+ V++ H Y+V EVI+LP+ GN YL+W+++ T
Sbjct: 58 DSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 169
BLAST of Vigun09g183800.1 vs. DB:Swiss
Match: CUTA_XENLA (Protein CutA homolog OS=Xenopus laevis OX=8355 GN=cuta PE=2 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 3.949e-31 Identity = 63/145 (43.45%), Postives = 88/145 (60.69%), Query Frame = 1 Query: 145 YSSALKTGCVL-----SLLRSKLGVRSHSAIRMEANSTTVPSI-VVYVTVPNKEAGKKLAESIVTEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKAHHEYDVPEVISLPITGGNLKYLEWIKESTRE 561
+ + L GC LL +G+R A M ++S S+ YVT PN K +A +V KLAACVN +P I S+Y+W+GK++ D+E LL+IKTR S + ALTE+V++ H Y+V EVISLPI GN YL+W+ + E
Sbjct: 10 FWTLLLPGCAFLFYMTPLLLRTVGIR---AFTMASDSYVSGSLSAAYVTCPNDTVAKDIARGLVERKLAACVNVIPQITSIYEWKGKLEEDTEVLLMIKTRSSKVSALTEYVRSVHPYEVCEVISLPIEQGNPPYLKWVGDIVPE 151
BLAST of Vigun09g183800.1 vs. DB:Swiss
Match: CUTA_RAT (Protein CutA OS=Rattus norvegicus OX=10116 GN=Cuta PE=1 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 4.221e-30 Identity = 49/98 (50.00%), Postives = 74/98 (75.51%), Query Frame = 1 Query: 265 YVTVPNKEAGKKLAESIVTEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKAHHEYDVPEVISLPITGGNLKYLEWIKESTR 558
+VT PN++ K++A ++V ++LAACVN +P I S+Y+W+GKI+ DSE L++IKT+ SL+ ALTE V++ H Y+V EVI+LP+ GN YL W+ + T
Sbjct: 70 FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTE 167
BLAST of Vigun09g183800.1 vs. DB:Swiss
Match: CUTA_MOUSE (Protein CutA OS=Mus musculus OX=10090 GN=Cuta PE=1 SV=3) HSP 1 Score: 111.694 bits (278), Expect = 5.586e-30 Identity = 49/98 (50.00%), Postives = 74/98 (75.51%), Query Frame = 1 Query: 265 YVTVPNKEAGKKLAESIVTEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKAHHEYDVPEVISLPITGGNLKYLEWIKESTR 558
+VT PN++ K++A ++V ++LAACVN +P I S+Y+W+GKI+ DSE L++IKT+ SL+ ALTE V++ H Y+V EVI+LP+ GN YL W+ + T
Sbjct: 70 FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTE 167
BLAST of Vigun09g183800.1 vs. DB:Swiss
Match: CUTA_THET8 (Divalent-cation tolerance protein CutA OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) OX=300852 GN=cutA PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 6.943e-30 Identity = 48/99 (48.48%), Postives = 73/99 (73.74%), Query Frame = 1 Query: 259 VVYVTVPNKEAGKKLAESIVTEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKAHHEYDVPEVISLPITGGNLKYLEWIKEST 555
VV +TVP++E + +A+++V E+LAACVN VPG+ S+Y+W+G++ D E LL++KT L E VKA H Y VPE+++LPI GN +YL+W++E+T
Sbjct: 4 VVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENT 102
BLAST of Vigun09g183800.1 vs. DB:Swiss
Match: CUTA_BOVIN (Protein CutA OS=Bos taurus OX=9913 GN=CUTA PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 9.348e-29 Identity = 48/97 (49.48%), Postives = 75/97 (77.32%), Query Frame = 1 Query: 265 YVTVPNKEAGKKLAESIVTEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKAHHEYDVPEVISLPITGGNLKYLEWIKEST 555
+VT PN++ K++A ++V ++LA CVN VP I S+Y+W+GKI+ DSE L++IKT+ SL+ ALT+ V++ H Y+V EVI+LP+ GN YL+W+++ T
Sbjct: 70 FVTCPNEKVAKEIARAVVEKRLA-CVNLVPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNSPYLQWVRQVT 165
BLAST of Vigun09g183800.1 vs. DB:Swiss
Match: CUTA_PECAS (Divalent-cation tolerance protein CutA OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=cutA PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 4.314e-26 Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 1 Query: 253 SIVVYVTVPNKEAGKKLAESIVTEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKAHHEYDVPEVISLPITGGNLKYLEWIKESTR 558
++V+ T P+ ++LA S++ +LAACV +PG S+Y WEGK++ SE ++IK+ S +AL H+K H YD PE++ LP++GG+ YL W+ S R
Sbjct: 9 AVVILCTAPDDACAQRLANSLLETRLAACVTLLPGARSLYYWEGKLEQQSEVQMLIKSDTSHQQALLTHLKQQHPYDTPELLVLPVSGGDSDYLTWLNASLR 110
BLAST of Vigun09g183800.1 vs. DB:Swiss
Match: CUTA_SHISS (Divalent-cation tolerance protein CutA OS=Shigella sonnei (strain Ss046) OX=300269 GN=cutA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 6.382e-26 Identity = 45/111 (40.54%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 226 MEANSTTVPSIVVYVTVPNKEAGKKLAESIVTEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKAHHEYDVPEVISLPITGGNLKYLEWIKESTR 558
++ S+ S+VV T P++ + LA ++ EKLAAC +PG S+Y WEGK++ + E +I+KT S +AL E +K+HH Y PE++ LP+T G+ YL W+ S R
Sbjct: 2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112 The following BLAST results are available for this feature:
BLAST of Vigun09g183800.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g183800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g183800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g183800.1; organism=Vigna unguiculata; type=mRNA; length=1037bpback to top protein sequence of Vigun09g183800.1_Vu_IT97K-499-35_v1.1 >Vigun09g183800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g183800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g183800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=188bpback to top mRNA from alignment at Vu09:35763315..35766835+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g183800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g183800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g183800.1; organism=Vigna unguiculata; type=mRNA; length=3521bp; location=Sequence derived from: Vu09:35763315..35766835+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:35763315..35766835+ >Vigun09g183800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g183800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g183800.1; organism=Vigna unguiculata; type=CDS; length=564bp; location=Sequence derived from: Vu09:35763315..35766835+ (Vigna unguiculataback to top |