Vigun09g195900.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g195900.1 vs. DB:Swiss
Match: CCD25_BOVIN (Coiled-coil domain-containing protein 25 OS=Bos taurus OX=9913 GN=CCDC25 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 1.249e-73 Identity = 127/199 (63.82%), Postives = 157/199 (78.89%), Query Frame = 1 Query: 1 MVFYFKARP-EAGDYTIFMGLDKFENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDGMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRSYKGLMVAENMTSNK 594
MVFYF + + YTI+MG DK+ENE+LIKYG+PEDIWFHVDK+SSAHVY+RLHKG+ I+ + + +L DCA LVKANSIQG K+NNV+VVYTPWSNLKKTA MDVGQ+GFH K V+ V VEK++NEI+NRL KTK+ER PDL+AE+E + ER E+K Q++E KRRE+ E K ELRSY LM ENM+SN+
Sbjct: 1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKMERFPDLEAEKECRDHEERNEKKAQIQEMKRREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199
BLAST of Vigun09g195900.1 vs. DB:Swiss
Match: CCD25_PONAB (Coiled-coil domain-containing protein 25 OS=Pongo abelii OX=9601 GN=CCDC25 PE=2 SV=2) HSP 1 Score: 223.787 bits (569), Expect = 2.959e-73 Identity = 127/199 (63.82%), Postives = 156/199 (78.39%), Query Frame = 1 Query: 1 MVFYFKARP-EAGDYTIFMGLDKFENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDGMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRSYKGLMVAENMTSNK 594
MVFYF + + YTI+MG DK+ENE+LIK+G+PEDIWFHVDK+SSAHVY+RLHKG+ I+ + + +L DCA LVKANSIQG K+NNV+VVYTPWSNLKKTA MDVGQ+GFH K V+ V VEK++NEI+NRL KTKVER PDL AE+E + ER E+K Q++E KRRE+ E K ELRSY LM ENM+SN+
Sbjct: 1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKVERFPDLAAEKECRDREERNEKKAQIQEMKRREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199
BLAST of Vigun09g195900.1 vs. DB:Swiss
Match: CCD25_HUMAN (Coiled-coil domain-containing protein 25 OS=Homo sapiens OX=9606 GN=CCDC25 PE=1 SV=2) HSP 1 Score: 223.787 bits (569), Expect = 2.959e-73 Identity = 126/199 (63.32%), Postives = 156/199 (78.39%), Query Frame = 1 Query: 1 MVFYFKARP-EAGDYTIFMGLDKFENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDGMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRSYKGLMVAENMTSNK 594
MVFYF + + YTI+MG DK+ENE+LIK+G+PEDIWFHVDK+SSAHVY+RLHKG+ I+ + + +L DCA LVKANSIQG K+NNV+VVYTPWSNLKKTA MDVGQ+GFH K V+ V VEK++NEI+NRL KTKVER PDL AE+E + ER E+K Q++E K+RE+ E K ELRSY LM ENM+SN+
Sbjct: 1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKVERFPDLAAEKECRDREERNEKKAQIQEMKKREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199
BLAST of Vigun09g195900.1 vs. DB:Swiss
Match: CCD25_MOUSE (Coiled-coil domain-containing protein 25 OS=Mus musculus OX=10090 GN=Ccdc25 PE=1 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 9.426e-72 Identity = 124/199 (62.31%), Postives = 155/199 (77.89%), Query Frame = 1 Query: 1 MVFYFKARP-EAGDYTIFMGLDKFENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDGMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRSYKGLMVAENMTSNK 594
MVFYF + + YTI+MG DK+ENE+LIKYG+PEDIWFHVDK+SSAHVY+RL KG+ I+ + + +L DCA LVKANSIQG K+NNV+VVYTPWSNLKKTA MDVGQ+GFH K V+ V VEK++NEI+NRL KTK+E+ PDL AE+E + ER E+K Q++E KR+E+ E K ELRSY LM ENM+SN+
Sbjct: 1 MVFYFTSSSVNSSTYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKGEKIEDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKLEKFPDLAAEKEGRDREERNEKKAQIQEMKRKEKEEMKKKREMDELRSYSSLMKVENMSSNQ 199
BLAST of Vigun09g195900.1 vs. DB:Swiss
Match: CCD25_DANRE (Coiled-coil domain-containing protein 25 OS=Danio rerio OX=7955 GN=ccdc25 PE=1 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 6.101e-70 Identity = 118/198 (59.60%), Postives = 157/198 (79.29%), Query Frame = 1 Query: 1 MVFYFKARPEAGDYTIFMGLDKFENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDGMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRSYKGLMVAENMTSNK 594
MVFYF + + +TI+MG DK+ENE+LIKYG+PEDIWFHVDK+SSAHVY+R+ KG TID + + +L DC QLVK NSIQG K+NN+++VYTPWSNLKKTA MD+GQ+GFH K V+ V VEK+INEIVNRL KTK ER PDL AE+E+ + ER E+K Q++E+K++E+ E K+ +L++Y LM ++NMT+N+
Sbjct: 1 MVFYFTSAVVSPPHTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGTTIDDIPKEVLIDCVQLVKNNSIQGCKMNNINIVYTPWSNLKKTADMDIGQIGFHRQKEVKIVAVEKKINEIVNRLEKTKEERYPDLAAEKESRDREERNEKKAQIQEQKKKEKEEVKKKKEMEDLKNYTSLMKSDNMTTNE 198
BLAST of Vigun09g195900.1 vs. DB:Swiss
Match: CCD25_XENTR (Coiled-coil domain-containing protein 25 OS=Xenopus tropicalis OX=8364 GN=ccdc25 PE=2 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 1.899e-69 Identity = 123/198 (62.12%), Postives = 158/198 (79.80%), Query Frame = 1 Query: 1 MVFYFKARPEAGDYTIFMGLDKFENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDGMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRSYKGLMVAENMTSNK 594
MVFYF + + YT++MG DK+ENE+LIKYG+PEDIWFHVDK+SSAHVY+RL K QTI+ + + +L DCAQLVKANSIQG K+NN++VVYTPW+NLKKTA MD+GQ+GFH K V+T+ VEK +++IVNRL KTK ER PDL AE+EA + ER E+K Q++E KR+E+ E K+ ELRSY LM +ENM+SN+
Sbjct: 1 MVFYFTSNVISPPYTMYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKDQTIEDIPKEVLLDCAQLVKANSIQGCKMNNINVVYTPWANLKKTADMDIGQIGFHRQKDVKTMTVEK-VSKIVNRLEKTKDERFPDLAAEKEARDREERNEKKAQIQEIKRKEKEEMKKKKEMDELRSYSSLMKSENMSSNQ 197
BLAST of Vigun09g195900.1 vs. DB:Swiss
Match: CCD25_DICDI (Coiled-coil domain-containing protein 25 homolog OS=Dictyostelium discoideum OX=44689 GN=ccdc25 PE=3 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 4.198e-55 Identity = 102/216 (47.22%), Postives = 151/216 (69.91%), Query Frame = 1 Query: 1 MVFYFK-ARPEAGDYTIFMGLDKFENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTIDGMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRSYKGLMVAENMTSNKQIASGSKSLQELEEDFM 645
MV YFK PE Y +MG+DKFENE+LIKYG+PED+WFHV+ +SSAHVY+RL KG+T + + +LE+C QLVK NSIQG K +VD+VYTPW+NLKKTA M+ GQV +HN + V+ VR ++ ++I+NR+ KT+ +R+ DL ER++ + +ER E++++ EK+R E+ +K++ +++ Y +M +NM NK + E+DFM
Sbjct: 1 MVLYFKLIDPE---YICYMGIDKFENEDLIKYGWPEDVWFHVNDLSSAHVYLRLRKGETWNDIPANILEECCQLVKQNSIQGCKEASVDIVYTPWANLKKTAGMEAGQVLYHNEREVKYVRNVRKDSKIINRIEKTREKREVDLMHERDSRDKSERHEKRKEQEEKRRAEKKAYEEKQKMEDIKKYTSIMKTDNMKFNKYNPTD-------EDDFM 206
BLAST of Vigun09g195900.1 vs. DB:Swiss
Match: JLP2_YEAST (Protein JLP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=JLP2 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 8.293e-35 Identity = 62/143 (43.36%), Postives = 93/143 (65.03%), Query Frame = 1 Query: 1 MVFYFKARPE--AGDYTIFMGLDKFENEELIKYGFPE--DIWFHVDKMSSAHVYVRLHKGQ-TIDGMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKRINEIVNRLNKTKVE 414
MV++++++P + Y I MG DKFEN+ LIK+ + E +WFH DK SS HVY++L + TID + + ++ DC QL K+ SIQGNK+ ++ TPW NL+K M+ G+V F + + R + R N+I+NRL KT+VE
Sbjct: 1 MVYFYESKPTEYSTPYQIVMGKDKFENDLLIKWSYRELNYVWFHADKYSSGHVYLKLRPNEKTIDDIPQEVICDCLQLCKSESIQGNKMPQCTILITPWHNLRKNRYMNPGEVSFKSLRQCRKMECGARDNKILNRLAKTRVE 143 The following BLAST results are available for this feature:
BLAST of Vigun09g195900.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g195900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g195900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g195900.1; organism=Vigna unguiculata; type=mRNA; length=1620bpback to top protein sequence of Vigun09g195900.1_Vu_IT97K-499-35_v1.1 >Vigun09g195900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g195900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g195900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=216bpback to top mRNA from alignment at Vu09:37039779..37043507- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g195900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g195900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g195900.1; organism=Vigna unguiculata; type=mRNA; length=3729bp; location=Sequence derived from: Vu09:37039779..37043507- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:37039779..37043507- >Vigun09g195900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g195900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g195900.1; organism=Vigna unguiculata; type=CDS; length=648bp; location=Sequence derived from: Vu09:37039779..37043507- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|