Transcript Overview
Name Vigun09g197000.1 Unique Name Vigun09g197000.1_Vu_IT97K-499-35_v1.1 Type mRNA Organism Vigna unguiculata (cowpea) Sequence length 2601
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun09g197000.1 Vigun09g197000.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun09g197000.1_Vu_IT97K-499-35_v1.1 Vigun09g197000.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g197000.1.v1.1.five_prime_UTR.1 Vigun09g197000.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g197000.1.v1.1.CDS.1 Vigun09g197000.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun09g197000.1.v1.1.CDS.2 Vigun09g197000.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun09g197000.1.v1.1.CDS.3 Vigun09g197000.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun09g197000.1.v1.1.CDS.4 Vigun09g197000.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g197000.1.v1.1.three_prime_UTR.1 Vigun09g197000.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
Homology
BLAST of Vigun09g197000.1 vs. DB:Swiss
Match:
NRG2_ARATH (Nitrate regulatory gene2 protein OS=Arabidopsis thaliana OX=3702 GN=NRG2 PE=1 SV=1)
HSP 1 Score: 155.606 bits (392), Expect = 3.312e-38
Identity = 125/427 (29.27%), Postives = 230/427 (53.86%), Query Frame = 1
Query: 778 LMQILGVLDDHFLKASESAQEVTKMLEATRLHYHSNFADNRGHIDHSARVMRVI--TWNRSFKGVSNGDAGKDDIDS-EEYETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVAILNKQKKRGASAESLEKTKAAVSHLHTRYIVDMQSMDSTVSEVNQIRDAQLYPKLVALVIEMANMWEHMCTYHDSQLKIVTDLKSL-DISQAPKETTKHHYERTVQLWNVVQEWHLQFEKLVTQQKHYIKALNSWLKLNLIPIESNLKEKISSPPKVQNPPIQY-LLHAWHDYVDKLPDELAKSAISSFAAVIKTIILQQXXXXXXXXXXXXTRKEYLKKKQAF----EEWYQKH-LLRKGPXXXXXXXXXXVNTNNPVSERQFVVESLQKKLEEEIESHQKHCVQVREKSLQSFKTRLPELFRALSDYS 2028
L +I+ + ++F KA+ S ++V++MLE R +F+ + + HS+ ++ + TW +D ++ + LD+LLAWEKKLYEE+K E K E+++K++ L Q+ +G L+KTKA+++ L + IV Q++ +T + + ++RD L P+LV L MW+ M YH++Q IV ++ L + S + T++ H + T L + V WH F L+ Q+ +I ++++W KL L+P+ +E ++ K P Y W +D++PD +A AI SF V+ I +Q +E K+K+R E KE KK + ++YQ + ++ G E+ + ++ +P+S+++ + Q+++EEE+ + K R +L + +T LP +F++L+ +S
Sbjct: 357 LKEIIDAIKENFDKAAASGEQVSQMLELGRAELDRSFSQLKKTVIHSSSLLSNLSSTWTSKPPLAVKYRIDTTALDQPNSSKSLCSTLDRLLAWEKKLYEEIKAREGFKIEHEKKLSQLQSQEYKGEDEAKLDKTKASITRLQSLIIVTSQAVTTTSTAIIRLRDTDLVPQLVELCHGFMYMWKSMHQYHETQNSIVEQVRGLINRSGKGESTSELHRQATRDLESAVSSWHSSFSSLIKFQRDFIHSVHAWFKLTLLPV---CQEDAANHHK--EPLDAYAFCDEWKLALDRIPDTVASEAIKSFINVVHVISAKQADEHKIKKRTESASKELEKKASSVRNLERKYYQSYSMVGVGLPESGPDNQHMLDARDPLSDKKSELAVCQRRVEEEMVKYSKAIEVTRAMTLNNLQTGLPGVFQSLTSFS 778 HSP 2 Score: 63.929 bits (154), Expect = 3.351e-9
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1
Query: 1 MGCAQSRIDNEESVSRCKDRKNLMKDAVVARNAFAAGHSGYAVALKNTGAALSDYALG 174
MGCA S++DNE++V RCKDR+ LMK+AV AR+ AA H+ Y +L+ TG+ALS +A G
Sbjct: 1 MGCAASKLDNEDAVRRCKDRRRLMKEAVYARHHLAAAHADYCRSLRITGSALSSFASG 58
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Score = Score = Score = Score = Score = Score = Score = Expect = 1.1E-22 / Score = 79.9 Expect = 8.3E-98 / Score = 327.5 Sequence Coil Coil mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite PF04783 PF04782
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 636..656 None No IPR available COILS Coil Coil coord: 567..587 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 61..102 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 175..199 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 55..104 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 178..199 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 128..158 IPR006868 Domain of unknown function DUF630 PFAM PF04783 DUF630 coord: 1..58 IPR006867 Domain of unknown function DUF632 PFAM PF04782 DUF632 coord: 260..565
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun09g197000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g197000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g197000.1; organism=Vigna unguiculata; type=mRNA; length=2601bp back to top protein sequence of Vigun09g197000.1_Vu_IT97K-499-35_v1.1
>Vigun09g197000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g197000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g197000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=698bp back to top mRNA from alignment at Vu09:37211979..37215633+
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g197000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g197000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g197000.1; organism=Vigna unguiculata; type=mRNA; length=3655bp; location=Sequence derived from: Vu09:37211979..37215633+ (Vigna unguiculataTAAAAATTCAGAGTCGCGGCGAATAACCGAATCTGTGTCCTTTCCTGTGT
CACTCTGCACACTCACTCACTCTCTCTGCTTCACACCGCACTCTCTCCTG
TGCGCTTCTCTGAGATCTCAAGAACTCGTTTCCGATTTCTATACGACACC
GTTTCGATCCCAAACTCATTCACATCTTCTTTGTGACAACGTACTACATT
TCTGCCTCCCGAAACAACAACCTCCGACTTTTCCGAA ATGGGTTGCGCAC
AGTCCCGAATAGACAACGAGGAATCCGTGTCACGCTGTAAGGACCGCAAG
AACTTGATGAAGGACGCCGTCGTCGCCCGCAACGCCTTCGCCGCCGGCCA
TTCTGGCTACGCCGTCGCACTCAAGAACACCGGCGCCGCCCTCAGCGACT
ACGCACTCGGCGAGACACACGACCCCCACCCTCCGCCGCCCCTCGATCCT
CCCACCGTCACCTCTGGCCCTCCGCCGCCACCCCCGCCGCCCATCGAGGA
CTCCCTTCCTCCCCCGCCCCCGCCGCTCCCCGAGTTCTCCCCTGTACCGC
TCACGCGCGCCGCCACCATGCCCGCCGGCGCCATGCACCACAGCAGCCCC
GTTCCGCTCACCATCGCCGAGGAGGAGGAAGAAGAAACCCCCAAGCCGGG
GAAGAAAACCGCCGGATCCTTGTCGCCGGAGATGAAGACACCGCCGCCGC
CGATGCCAGAGTCTAAGGGCATGGCTTGGGATTACTTCTTCATGGTGGAC
AACATGCCTGGAGCTTCTCTCAATGCTGAAGATGATGACGATGATAATAA
CGATAATGATGATAATGGTGATGATGAGGGTAAAATGGAGAATGTGGTTG
AAGACGAGGTTGAGCCTAAAACCCCGGAGAAAGTGCAGGAACATGTACAC
GAAAATATCCATGAAGAGCATGATGAGATAAGTGAGGCAAAGAAGCACAT
TGAGCATTCTAAAACTGCTCCAGCTGAGTTTAGGAGAGCGATAAAGGTGG
TTCCTTCCGTTACTCTGATGCAGATTCTCGGTGTGCTTGATGATCACTTT
TTGAAGGCTTCCGAGAGTGCTCAAGAAGTTACCAAGATGCTTGAGGCTAC
TAGGTTGCATTATCATTCCAATTTTGCTGATAATCGCG GTAGGGGTGATT
TGTTTCTTTCTGTTTTGAAGTTTGTTGAATTGTTGAGATTGTTTAATTTC
ATGTGGTGGTGATATGAACAGGGCACATTGATCATTCTGCTAGGGTTATG
CGCGTCATAACTTGGAACAGGTCGTTCAAAGGTGTATCCAATGGGGATGC
TGGGAAAGATGATATTGATTCCGAAGAGTATGAAACTCATGCCACTGTTT
TGGACAAGTTGTTGGCATGGGAAAAGAAACTTTATGAAGAGGTCAAG GTA
GGTGTCAACGTTCATGATCTTGCTACCCTTTTCATTATGTTTCATTTTTT
TCATTCTTGATAGTATTAATATTTTCTTTGAGTTCAATATTTTGACATTA
TCTGTGTAAAGAAAATTATGTTGTCAATCATTCAAACATTATCATTAGTA
TGATTTTTAAGCTAGTTATTATTGAAGTCTATGAACTTAACATACATGAA
GGTTTGTGATTAGATGACAATGTAAATATGCTTTACACTATCATTACATG
TACCTTTTTCTGATATTTGTATTCATGTTTTGTTGATTTATGATTTTGAG
TCACAAAACTTTACTCCTTGTCAACAGCAAGGTGAGCTTATGAAGTTCGA
GTATCAGAGAAAAGTTGCAATTCTAAACAAGCAGAAGAAGCGTGGTGCCA
GCGCTGAATCCTTGGAAAAAACTAAAGCAGCCGTTAGTCATTTGCATACA
AGATATATTGTTGACATGCAGTCCATGGACTCAACAGTTTCAGAAGTGAA
CCAGATTCGAGATGCTCAACTGTATCCAAAACTTGTGGCTCTTGTTATTG
A GTAAGTATTACTCATAAGAAATTTTAAGAGATGCAATGGTACTATTCTG
TAGCATTTGATATTTTATTGTGAACTTTCTTTCAGGATTGGCAGTGTTCC
AAACTTCTAGCTTGTAGACCTAAATTAGTTTCAAATGTGAAACATTGGAG
CATAATATAATCCAGCATCCTAGTAATTGGTTTTTTAACCTTAAAAAACC
TTTCATGATGAAGTTTAGTTCTTGGCAGTTTATGAGCCATTTAAATTCTG
ACCTTGGGTACTGAAGTCCATTTTTTTACTATAGAATACAATTAATCACT
AATAAGAGTTATGTTACTATACATGTATAGTTTCCTAGTTGTTCTCAATG
CCTAGACGCTACTACTAGATCCTAAATTTTGAGCGTGTATTTTTGTGTTT
TGTTTTTATCTTGCTTTGCTACTAAATTGTTTTATTTTGTCTTTTTTCTG
TTGCTGAGTGTGTAGACCGATGAACATTTCATTACTAAAATAAGAATAAT
ATGACATGTTTACATCCCTAGCTTTCAATTTGCTCTTATGCTTACTACAA
CTGAATCCAGAATTTTTAATTCATGGCTTGTGATTGTTTTCTCTTGCACC
ATTAATGGATCCTAATTGTGAATCCACTTGCTTTTTCTTCAGGATGGCAA
ATATGTGGGAACACATGTGCACATATCATGACAGCCAGCTGAAAATAGTT
ACGGATCTCAAATCACTTGATATTTCTCAAGCTCCTAAGGAAACAACAAA
GCATCATTACGAACGCACCGTGCAACTTTGGAATGTCGTCCAAGAATGGC
ATTTACAATTTGAGAAGCTTGTGACTCAACAAAAGCATTACATCAAAGCT
CTTAACAGCTGGCTAAAATTGAATCTCATCCCTATTGAAAGCAACCTTAA
AGAGAAAATATCATCGCCGCCGAAGGTGCAGAATCCGCCAATCCAATACC
TTCTCCACGCGTGGCATGATTATGTTGACAAGCTTCCTGATGAGCTTGCC
AAATCTGCTATTTCCTCCTTTGCTGCTGTGATAAAGACCATCATACTTCA
GCAGGAGGAAGAGATGAAGTTGAAGGAGAGGTGTGAGGAAACCAGAAAGG
AATACTTAAAGAAAAAACAAGCCTTTGAGGAATGGTACCAGAAGCATTTA
CTGCGGAAGGGGCCTGAAGAAGCAGAACATGAAAGAGGAGAGGAAGTGAA
CACAAACAACCCTGTCTCGGAGAGACAATTTGTTGTTGAGAGCTTGCAGA
AGAAATTAGAAGAGGAAATTGAATCTCACCAAAAACATTGTGTTCAGGTT
CGAGAGAAATCACTACAGAGTTTCAAAACTCGCTTGCCTGAACTCTTCCG
TGCTTTATCAGACTATTCTCATGCCTGTTTTGATGCTTATGAGAAACTGA
AATCAATCACACAGTCACGGGGTGGTGGTGCATGA AAATCAAGTTTTTTT
GTCCACTTTTGTGAAGTTTAGTTTATGTATTCCGAACCTATGTAGTGTGT
GTTATTGTCCTCACACAAGAAGGCGTTCATATTTTAGCTTGACGTGCAGA
ATCATCAATCTTGTGTGAAAATTTTGCCTCAGCTTTTCAAGTTCTAACCA
TCCTTTGTTTATGTACGCATTTTGCATGAGCAAATATATTGGTAGTTGCG
TCATGACAGTGATTTATTGGTCCTGCAAGTTTATTCAACCCACTTAGTCC
AAATC back to top Coding sequence (CDS) from alignment at Vu09:37211979..37215633+
>Vigun09g197000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g197000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g197000.1; organism=Vigna unguiculata; type=CDS; length=2094bp; location=Sequence derived from: Vu09:37211979..37215633+ (Vigna unguiculata back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
